;Computational Prediction of Promoters in the Escherichia coli genome.
;Author: Araceli M. Huerta (amhuerta@ccg.unam.mx)
;Pleace cite: A.M. Huerta, J. Collado-Vides, J Mol Biol. 333:261-78 (2003).
;File Title: Sigma70, Sigma24, Sigma28, Sigma32, Sigma38, & Sigma54 promoter predictions in E. coli K12.
;Predictions were done in E. coli K12 from the NCBI version: NC_000913.2 (13-FEB-2011)
;Predictions were calibrated using RegulonDB Version 7.0 (http://regulondb.ccg.unam.mx),
;that does correspond to Ecocyc version 14.5
;The data would be distributed following the Licence: http://regulondb.ccg.unam.mx/menu/download/full_version/license_regulondb_registration.jsp
;
;The data contain 4342 Sigma70 promoter predictions: lowest score = 1.334 (P-value = 0.000850233109777606), highest score = 6.726 (P-value = 1.44124966379965e-06)
;The data contain 3964 Sigma38 promoter predictions: lowest score = 2.48 (P-value = 0.0139817831594055), highest score = 7.31 (P-value = 1.34034288573999e-05)
;The data contain 752 Sigma32 promoter predictions: lowest score = 1.865 (P-value = 0.000248516827317573), highest score = 10.953 (P-value = 6.30082606126306e-08)
;The data contain 524 Sigma24 promoter predictions: lowest score = -3.810 (P-value = 0.000106219802845229), highest score = 9.705 (P-value = 1.01563147242684e-06)
;The data contain 212 Sigma28 promoter predictions: lowest score = 2.996 (P-value = 8.87222371802212e-05), highest score = 14.789 (P-value = 6.00904502872066e-09)
;The data contain 79 Sigma54 promoter predictions: lowest score = 0.480 (P-value = 3.58052901567964e-06), highest score = 12.405 (P-value = 1.83692991299296e-07)
;Promoter Predictions can be read in http://www.ccg.unam.mx/Computational_Genomics/PromoterTools
;---------------------------------------------------------------------------------------
;(1)Lend	(2)Rend	(3)Strand	(4)Gene	(5)Promoter_Name	(6)Sigma	(7)-35Box_Lend	(8)-35Box_Rend	(9)-35Box	(10)Spacer	(11)-10Box_Lend	(12)-10Box_Rend	(13)-10Box	(14)Pos_1	(15)Score	(16)Homology_Level	(17)P-value	(18)Signicance_Level	(19)Evidence	(20)EvidenceType	(21)Sequence
15445	16557	F	insL	insLp6	Sigma28	15402	15407	cTTAAG	15	15423	15430	CCTGATAT	15436	5.026	poor homology	2.37E-05	p < 0.0001	Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight	weak evidence	gctaaCTTAAGggttgtggtattacgCCTGATATgatttAacgtg
34781	35371	R	caiE	caiEp3	Sigma28	35528	35533	cTACCG	15	35505	35512	GCCGGTAG	35499	4.436	poor homology	3.95E-05	p < 0.0001	Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight	weak evidence	gagatCTACCGcaccaccagcgaaatGCCGGTAGaagaaGcgtat
34781	35371	R	caiE	caiEp7	Sigma28	35427	35432	tTGAAG	14	35405	35412	GCCGAGAA	35399	9.779	high homology	1.49E-06	p < 0.0001	Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight	weak evidence	tgccaTTGAAGggccgctggcgtttGCCGAGAAgcgcgAtccgg
193521	194717	F	dxr	dxrp4	Sigma28	193305	193310	aTAAAG	14	193325	193332	GACGATCG	193338	5.849	poor homology	2.19E-05	p < 0.0001	Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight	weak evidence	gaaagATAAAGagatcagcgaagacGACGATCGccgttCtcagg
284619	286001	F	yagG	yagGp9	Sigma28	284397	284402	tTTAAG	14	284417	284424	GCGGAATA	284431	5.929	poor homology	3.07E-05	p < 0.0001	Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight	weak evidence	attatTTTAAGagataaaaccgtctGCGGAATAtttcccGcagac
317900	319225	R	ykgC	ykgCp8	Sigma28	319341	319346	aTTAAG	15	319318	319325	GACGATAA	319312	9.546	high homology	6.48E-07	p < 0.0001	Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight	weak evidence	ttctgATTAAGaaaaagaaaatatcaGACGATAAgacaaAatatc
404988	405446	F	yaiI	yaiIp3	Sigma28	404913	404918	cAGAAG	15	404934	404941	GCCGGAAG	404947	3.156	poor homology	8.03E-05	p < 0.0001	Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight	weak evidence	gctggCAGAAGcataaacagaactatGCCGGAAGgcaaaAgcgcg
451294	452769	R	ampG	ampGp6	Sigma28	452935	452940	tTGAAG	14	452913	452920	TCCAACAA	452908	5.669	poor homology	3.61E-05	p < 0.0001	Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight	weak evidence	caacgTTGAAGgtgcgttccaggccTCCAACAAaaatAtcgcc
474603	475175	F	ybaY	ybaYp3	Sigma28	474435	474440	aTAACG	15	474456	474463	TCCGATGG	474469	4.946	poor homology	2.81E-05	p < 0.0001	Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight	weak evidence	tgagtATAACGcaaatttgctactggTCCGATGGgtgcaAtggtc
489334	489495	R	ybaM	ybaMp3	Sigma28	489577	489582	aTGAAG	15	489554	489561	GCCGCCAT	489548	5.266	poor homology	2.00E-05	p < 0.0001	Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight	weak evidence	agcctATGAAGcgcgcctggcacgctGCCGCCATgcgctGgaaaa
490106	490483	F	ybaN	ybaNp9	Sigma28	490070	490075	cTAAAG	14	490090	490097	GCTGACAA	490103	11.269	high homology	2.29E-07	p < 0.0001	Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight	weak evidence	ttatgCTAAAGtagccactctgtaaGCTGACAAcactcAatatg
513625	514083	R	ybbJ	ybbJp1	Sigma28	514328	514333	cTGAAG	14	514306	514313	GCCGAAGC	514301	8.269	good homology	2.19E-06	p < 0.0001	Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight	weak evidence	acaggCTGAAGcgcgtgaacgttccGCCGAAGCagaaGcccgc
605174	605422	R	ybdJ	ybdJp5	Sigma28	605515	605520	aAAAAG	15	605492	605499	GCCGGTGA	605487	5.836	poor homology	1.35E-05	p < 0.0001	Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight	weak evidence	tggtgAAAAAGcattgtgagatctggGCCGGTGActaaGccggg
607288	608400	F	insL	insLp5	Sigma28	607245	607250	cTTAAG	15	607266	607273	CCTGATAT	607279	5.026	poor homology	2.37E-05	p < 0.0001	Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight	weak evidence	gctaaCTTAAGggttgtggtattacgCCTGATATgatttAacgtg
642780	643190	R	rnk	rnkp7	Sigma28	643431	643436	aTAAAG	14	643409	643416	TCTGATTT	643403	6.809	good homology	1.44E-05	p < 0.0001	Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight	weak evidence	gattgATAAAGcgggttattaatcaTCTGATTTacaaaAcacgc
668519	669130	R	cobC	cobCp6	Sigma28	669297	669302	cTGCCG	14	669275	669282	GCTGAAAC	669269	5.249	poor homology	5.44E-05	p < 0.0001	Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight	weak evidence	tcagcCTGCCGgtaaaatttatctgGCTGAAACgccgtGgttta
728357	728563	F	ybfA	ybfAp8	Sigma28	728272	728277	cAAAAG	15	728293	728300	TCAGATAA	728305	6.116	poor homology	1.33E-05	p < 0.0001	Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight	weak evidence	ttacaCAAAAGgcggtactattttcaTCAGATAAacaaAttcat
787020	788060	R	galM	galMp4	Sigma28	788149	788154	cTGCCG	14	788127	788134	GCTGAACA	788121	5.369	poor homology	4.73E-05	p < 0.0001	Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight	weak evidence	ggtgcCTGCCGtacagcaagctgtcGCTGAACAatatgAagcaa
820765	821721	R	ybhN	ybhNp5	Sigma28	821899	821904	cAAACG	15	821876	821883	GACCAAAA	821871	4.196	poor homology	5.55E-05	p < 0.0001	Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight	weak evidence	ctgccCAAACGcacctggtggaacctGACCAAAAgcgtGctggc
837753	838430	R	ybiX	ybiXp2	Sigma28	838527	838532	cTACCG	15	838504	838511	GCCAAGAA	838497	3.936	poor homology	6.25E-05	p < 0.0001	Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight	weak evidence	agcggCTACCGttatcacccgggcgaGCCAAGAAccttctTgctca
859397	861829	R	ybiW	ybiWp4	Sigma28	862035	862040	tAAAAG	14	862013	862020	GCCGCCGA	862006	5.449	poor homology	4.41E-05	p < 0.0001	Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight	weak evidence	ctctgTAAAAGccattaccgattttGCCGCCGAcgagctGcacgt
922136	922456	F	clpS	clpSp7	Sigma28	922101	922106	cTGCCG	15	922122	922129	GATGATAA	922135	7.106	good homology	5.40E-06	p < 0.0001	Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight	weak evidence	gcgttCTGCCGataaccgtaaccgaaGATGATAActgacAatggg
963543	965807	F	ycaI	ycaIp8	Sigma28	963298	963303	gTAAAG	14	963318	963325	GCCAATAT	963331	6.249	good homology	3.61E-05	p < 0.0001	Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight	weak evidence	acctgGTAAAGaactgcgcgatcgcGCCAATATttacgGttaag
1055484	1056512	F	torT	torTp7	Sigma28	1055397	1055402	tTCACG	14	1055417	1055424	GGTGAAAA	1055430	4.969	poor homology	7.05E-05	p < 0.0001	Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight	weak evidence	ttaaaTTCACGgtcggtgcactttaGGTGAAAAaggttGagtcg
1104637	1104948	F	ymdA	ymdAp9	Sigma28	1104602	1104607	cTCAAG	14	1104622	1104629	GAGGAAAT	1104635	5.699	poor homology	2.62E-05	p < 0.0001	Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight	weak evidence	caaccCTCAAGgatgactaatcattGAGGAAATagaatAaatgt
1117124	1117699	R	yceI	yceIp5	Sigma28	1117891	1117896	tTGACG	14	1117869	1117876	GCCGACGC	1117864	5.959	poor homology	3.17E-05	p < 0.0001	Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight	weak evidence	ctggtTTGACGtccccgcgacccttGCCGACGCtggcGcacag
1174650	1175849	F	lolC	lolCp6	Sigma28	1174564	1174569	cTGACG	15	1174585	1174592	GACGTTTA	1174597	5.826	poor homology	1.11E-05	p < 0.0001	Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight	weak evidence	tagccCTGACGatcacttacagttcaGACGTTTAcccaTcttgc
1186342	1187463	R	ycfD	ycfDp5	Sigma28	1187521	1187526	tTCACG	14	1187499	1187506	TCCGTTAT	1187493	4.709	poor homology	9.33E-05	p < 0.0001	Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight	weak evidence	catacTTCACGcattacgttaagcaTCCGTTATaatcgGttgca
1193050	1193511	R	nudJ	nudJp6	Sigma28	1193690	1193695	cAAAAG	15	1193667	1193674	GCTGAAGA	1193660	7.096	good homology	4.12E-06	p < 0.0001	Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight	weak evidence	gaacgCAAAAGtattcccaccagctgGCTGAAGAtcacctTatatg
1243951	1244205	F	ymgE	ymgEp7	Sigma28	1243746	1243751	cTCACG	14	1243766	1243773	ACTGACAA	1243778	5.539	poor homology	4.97E-05	p < 0.0001	Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight	weak evidence	aatgaCTCACGcggaaaaactcctgACTGACAAactgTctttg
1314440	1315246	R	trpA	trpAp8	Sigma28	1315293	1315298	aTAAAG	14	1315271	1315278	CACGATAT	1315265	6.969	good homology	1.29E-05	p < 0.0001	Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight	weak evidence	cggcgATAAAGacatcttcaccgttCACGATATtttgaAagcac
1337354	1338118	F	pgpB	pgpBp8	Sigma28	1337173	1337178	tTTAAG	14	1337193	1337200	CCAGATAA	1337206	5.029	poor homology	7.34E-05	p < 0.0001	Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight	weak evidence	acacgTTTAAGctgcatgaaattctCCAGATAAtgctgGttctg
1387894	1388622	R	mpaA	mpaAp5	Sigma28	1388691	1388696	tTGAAG	15	1388668	1388675	TCCGCAAA	1388663	5.156	poor homology	2.23E-05	p < 0.0001	Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight	weak evidence	tagcgTTGAAGaaaaggatttgataaTCCGCAAAatttGcacaa
1394100	1395116	F	insH	insHp7	Sigma28	1393962	1393967	cTCCAG	14	1393982	1393989	GCCGGAAA	1393995	7.309	good homology	1.18E-05	p < 0.0001	Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight	weak evidence	ggctcCTCCAGataattgtcgtcatGCCGGAAAcccctGgcggg
1485259	1486059	F	ydcF	ydcFp4	Sigma28	1485221	1485226	cTCACG	15	1485242	1485249	AACGATAA	1485255	6.346	good homology	1.22E-05	p < 0.0001	Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight	weak evidence	attatCTCACGcagtattcttaagggAACGATAAggaggAaccat
1518987	1521089	R	yncD	yncDp11	Sigma28	1521327	1521332	aTGACG	14	1521305	1521312	ACCGATAT	1521300	6.959	good homology	2.23E-05	p < 0.0001	Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight	weak evidence	aatgcATGACGactccctttgatgaACCGATATttttGctgct
1550852	1551862	R	adhP	adhPp5	Sigma28	1552046	1552051	tTGACG	14	1552024	1552031	GCCGAATA	1552018	9.429	high homology	1.41E-06	p < 0.0001	Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight	weak evidence	ggccaTTGACGataatttctggcaaGCCGAATAccgcgActacc
1814410	1815159	R	chbG	chbGp5	Sigma28	1815363	1815368	tTAAAG	14	1815341	1815348	GCCAGTAA	1815336	6.529	good homology	1.37E-05	p < 0.0001	Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight	weak evidence	caccaTTAAAGgcttcgagattgctGCCAGTAAcgccGcactt
1838807	1839427	R	ynjF	ynjFp6	Sigma28	1839664	1839669	cTCACG	14	1839642	1839649	GCTGACTT	1839635	6.219	good homology	2.65E-05	p < 0.0001	Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight	weak evidence	cgtaaCTCACGcaccagcgcctgccGCTGACTTtcatccGgctcg
1879936	1881021	F	dmlA	dmlAp4	Sigma28	1879702	1879707	cTCCAG	15	1879723	1879730	GCTGACGA	1879736	5.866	poor homology	1.54E-05	p < 0.0001	Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight	weak evidence	gtttgCTCCAGcaaggcgatgcgcttGCTGACGAacgccGgtgaa
1892157	1892456	F	yoaC	yoaCp7	Sigma28	1892103	1892108	aTTAAG	15	1892124	1892131	ATCGATAA	1892136	3.906	poor homology	7.12E-05	p < 0.0001	Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight	weak evidence	tgcaaATTAAGgtcatatatagccttATCGATAAcatgGttaat
1910792	1912840	R	prc	prcp1	Sigma28	1913079	1913084	cAAAAG	14	1913057	1913064	GCCAAAAA	1913051	7.789	good homology	9.83E-06	p < 0.0001	Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight	weak evidence	gtgcgCAAAAGccggtagagaaagcGCCAAAAAcagtaAaagca
1975290	1975868	R	flhC	flhCp3	Sigma28	1975985	1975990	tTGACG	15	1975962	1975969	GACGATCT	1975956	4.816	poor homology	2.98E-05	p < 0.0001	Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight	weak evidence	ctcagTTGACGcaagattcccgcgttGACGATCTccagcAaattc
1985531	1985782	R	yecJ	yecJp4	Sigma28	1985855	1985860	aTGACG	15	1985832	1985839	GCTGAAGA	1985826	6.366	good homology	8.21E-06	p < 0.0001	Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight	weak evidence	tcctgATGACGgtggatgtgactatcGCTGAAGAtgtgaAgtcgc
1987275	1987514	R	yecH	yecHp5	Sigma28	1987704	1987709	tTCACG	14	1987682	1987689	GACGATCT	1987676	5.479	poor homology	4.28E-05	p < 0.0001	Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight	weak evidence	tgtttTTCACGctttcttctgtcctGACGATCTttatgAgtgat
2034818	2036176	R	yedV	yedVp6	Sigma28	2036253	2036258	cAAAAG	14	2036231	2036238	CCTGAAAA	2036226	6.029	poor homology	3.30E-05	p < 0.0001	Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight	weak evidence	ccgcgCAAAAGttgatgatccttttCCTGAAAAgctaAttgcc
2040392	2040922	F	yodB	yodBp14	Sigma28	2040252	2040257	cTCACG	15	2040273	2040280	GCTGGTTA	2040285	4.816	poor homology	3.14E-05	p < 0.0001	Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight	weak evidence	ctgtgCTCACGccattgcttatattgGCTGGTTAcaatAtgcac
2064329	2065345	R	insH	insHp4	Sigma28	2065563	2065568	cTGAAG	14	2065541	2065548	TGTGATAA	2065535	6.919	good homology	6.66E-06	p < 0.0001	Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight	weak evidence	gcctgCTGAAGaacgttgctctgagTGTGATAAaccttTttatt
2095345	2096325	R	cld	cldp10	Sigma28	2096527	2096532	cAGAAG	14	2096505	2096512	GCAGATAA	2096499	8.779	high homology	4.42E-06	p < 0.0001	Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight	weak evidence	aatggCAGAAGagcttaaggatgtgGCAGATAAggtatAcaccc
2265851	2266837	F	yeiR	yeiRp3	Sigma28	2265730	2265735	tTAACG	15	2265751	2265758	GCGGATGA	2265764	6.616	good homology	8.05E-06	p < 0.0001	Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight	weak evidence	aaaatTTAACGatttctgcggttaaaGCGGATGAagctcAccttc
2301927	2302415	F	eco	ecop7	Sigma28	2301839	2301844	aTAAAG	15	2301860	2301867	GATGAATA	2301873	6.296	good homology	6.79E-06	p < 0.0001	Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight	weak evidence	tattcATAAAGcaaattaataaatctGATGAATAtgttaAccttc
2315049	2317898	R	rcsC	rcsCp5	Sigma28	2318031	2318036	aTGACG	15	2318008	2318015	GGTGATGA	2318001	4.276	poor homology	5.12E-05	p < 0.0001	Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight	weak evidence	ggtatATGACGattatcagaggttaaGGTGATGAtttctcGgcggt
2354926	2355825	F	yfaD	yfaDp5	Sigma28	2354679	2354684	cACAAG	15	2354700	2354707	TCCGATTA	2354712	7.076	good homology	5.96E-06	p < 0.0001	Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight	weak evidence	atgtcCACAAGtcttcgctgcgaacaTCCGATTAcgctActggc
2471626	2471988	F	yfdP	yfdPp9	Sigma28	2471560	2471565	cTGAAG	14	2471580	2471587	GCTGATAA	2471594	12.329	high homology	8.25E-08	p < 0.0001	Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight	weak evidence	gctgcCTGAAGcttcgcaacgttaaGCTGATAAacattcGacgca
2500012	2502507	R	fryA	fryAp6	Sigma28	2502544	2502549	cTGACG	15	2502521	2502528	CCTGATTA	2502515	5.096	poor homology	2.32E-05	p < 0.0001	Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight	weak evidence	ttcaaCTGACGgatttcagatgatctCCTGATTAacccgGagcgg
2512353	2513465	F	insL	insLp5	Sigma28	2512310	2512315	cTTAAG	15	2512331	2512338	CCTGATAT	2512344	5.026	poor homology	2.37E-05	p < 0.0001	Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight	weak evidence	gctaaCTTAAGggttgtggtattacgCCTGATATgatttAacgtg
2547668	2548567	R	yfeX	yfeXp5	Sigma28	2548728	2548733	cTGAAG	14	2548706	2548713	GACGATAC	2548700	9.509	high homology	8.15E-07	p < 0.0001	Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight	weak evidence	tggtcCTGAAGggttaatgccttcgGACGATACcctgaAaaact
2549299	2549748	R	yfeZ	yfeZp3	Sigma28	2549971	2549976	aTGACG	14	2549949	2549956	GCTTATTA	2549943	5.099	poor homology	7.56E-05	p < 0.0001	Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight	weak evidence	cggttATGACGggcatcgcgggtctGCTTATTAtcttgGcgtgc
2621066	2623132	F	ppk	ppkp5	Sigma28	2620862	2620867	cTGCCG	15	2620883	2620890	GCCGACGA	2620896	7.446	good homology	3.14E-06	p < 0.0001	Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight	weak evidence	aacgtCTGCCGccgcagggctacgctGCCGACGAgtaatAccccc
2643035	2645347	R	pbpC	pbpCp1	Sigma28	2645543	2645548	aTTAAG	15	2645520	2645527	GACGATCG	2645515	3.196	poor homology	8.87E-05	p < 0.0001	Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight	weak evidence	cgagcATTAAGcacattgagttccgtGACGATCGctttGtggcg
2671838	2672710	R	yphB	yphBp2	Sigma28	2672845	2672850	cTGACG	14	2672823	2672830	GCCGCGTA	2672817	5.229	poor homology	3.72E-05	p < 0.0001	Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight	weak evidence	atgatCTGACGgactggaagctgtgGCCGCGTAacgccAttacc
2710918	2712252	F	srmB	srmBp5	Sigma28	2710865	2710870	aTGAAG	14	2710885	2710892	GTCTATAA	2710898	5.869	poor homology	3.75E-05	p < 0.0001	Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight	weak evidence	aacagATGAAGattgcagccgtaacGTCTATAAtcagcGcccca
2722470	2723768	R	kgtP	kgtPp7	Sigma28	2723811	2723816	cAAAAG	15	2723788	2723795	TCGGATTA	2723782	4.696	poor homology	3.50E-05	p < 0.0001	Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight	weak evidence	ataaaCAAAAGcgaccgacaaaagcaTCGGATTAcggcaGgagac
2739897	2740415	F	yfiR	yfiRp8	Sigma28	2739692	2739697	aTGAAG	14	2739712	2739719	GCTGATGA	2739724	9.849	high homology	1.46E-06	p < 0.0001	Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight	weak evidence	actgcATGAAGtatggcaaaaagggGCTGATGAaaatGccagc
2795233	2795532	F	ygaV	ygaVp6	Sigma28	2795037	2795042	cTCCAG	15	2795058	2795065	CCCTATAA	2795070	3.286	poor homology	0.000102055	p < 0.001	Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight	weak evidence	cgattCTCCAGaaacccatatgtactCCCTATAAgaaaAttact
2869323	2869802	R	ispF	ispFp2	Sigma28	2869960	2869965	aTGAAG	14	2869938	2869945	GACGAAGC	2869933	5.679	poor homology	3.95E-05	p < 0.0001	Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight	weak evidence	tctaaATGAAGgcgcgactattaccGACGAAGCctcgGcgctg
2929077	2929832	F	ygdG	ygdGp2	Sigma28	2928862	2928867	aTAAAG	14	2928882	2928889	TACGAAAC	2928895	5.629	poor homology	2.49E-05	p < 0.0001	Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight	weak evidence	cctcgATAAAGttatcgaaaccatgTACGAAACaggtaAagata
2969293	2969511	F	ygdR	ygdRp5	Sigma28	2969236	2969241	aTAACG	14	2969256	2969263	GACTATTA	2969269	6.099	poor homology	3.17E-05	p < 0.0001	Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight	weak evidence	gatatATAACGtcggtttataaacaGACTATTAtcataGgtagg
2986524	2987333	F	yqeI	yqeIp8	Sigma28	2986403	2986408	tTAAAG	15	2986424	2986431	CATGATAA	2986437	5.406	poor homology	1.25E-05	p < 0.0001	Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight	weak evidence	caacaTTAAAGcctcatttcaatcatCATGATAAatataAaatta
3099829	3100155	R	yggL	yggLp3	Sigma28	3100304	3100309	tTGAAG	14	3100282	3100289	GACGGTTA	3100276	6.849	good homology	1.37E-05	p < 0.0001	Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight	weak evidence	tatgcTTGAAGtgatgtcttctattGACGGTTAtaaaaAcctgt
3111565	3112374	R	pppA	pppAp4	Sigma28	3112577	3112582	cTGCCG	14	3112555	3112562	CCGGATAA	3112550	4.469	poor homology	0.000112788	p < 0.001	Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight	weak evidence	gatgtCTGCCGagtaagcccgtaggCCGGATAAggcgCtcgcg
3117619	3119301	R	glcA	glcAp12	Sigma28	3119372	3119377	tTACAG	14	3119350	3119357	GCTTATTA	3119343	4.959	poor homology	7.87E-05	p < 0.0001	Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight	weak evidence	atattTTACAGttcagtcctcttttGCTTATTAcaacctTaagta
3180572	3181345	F	zupT	zupTp7	Sigma28	3180530	3180535	tTGACG	14	3180550	3180557	GAAGATTT	3180563	4.189	poor homology	0.000101039	p < 0.001	Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight	weak evidence	ttattTTGACGatctgcctgaaggtGAAGATTTataagGagttg
3234562	3235254	F	ygjQ	ygjQp6	Sigma28	3234450	3234455	cTAACG	14	3234470	3234477	GCAGAACA	3234484	5.889	poor homology	1.17E-05	p < 0.0001	Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight	weak evidence	tgtggCTAACGcagttgtcgcttggGCAGAACAaaatctGaaaat
3236602	3237567	F	alx	alxp3	Sigma28	3236543	3236548	aAAAAG	15	3236564	3236571	TCCGACGT	3236577	3.996	poor homology	5.60E-05	p < 0.0001	Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight	weak evidence	tgcatAAAAAGcagcggctgacgtctTCCGACGTtggccGttttt
3290497	3291357	R	rsmI	rsmIp6	Sigma28	3291443	3291448	cAAACG	15	3291420	3291427	TACCATAA	3291415	3.546	poor homology	9.52E-05	p < 0.0001	Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight	weak evidence	gctttCAAACGagaaaatgttgagggTACCATAAtgtaTccagt
3295120	3296160	R	yraQ	yraQp4	Sigma28	3296256	3296261	cTTCAG	14	3296234	3296241	GCTGAATA	3296229	7.109	good homology	1.15E-05	p < 0.0001	Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight	weak evidence	aagctCTTCAGaattacgcaaaagaGCTGAATAattaTtccca
3306062	3306946	R	nlpI	nlpIp2	Sigma28	3307090	3307095	cTGCAG	14	3307068	3307075	GCTGCTGA	3307062	6.009	poor homology	3.01E-05	p < 0.0001	Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight	weak evidence	acctgCTGCAGcaccggaagctccgGCTGCTGAacaggGcgagt
3364948	3365664	F	yhcF	yhcFp5	Sigma28	3364877	3364882	tTTAAG	15	3364898	3364905	ACCGACAT	3364911	4.136	poor homology	5.66E-05	p < 0.0001	Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight	weak evidence	cagctTTTAAGgatgaaggggaactaACCGACATgacagAtatta
3376892	3378019	R	yhcM	yhcMp4	Sigma28	3378168	3378173	cTTCAG	14	3378146	3378153	GCTGATTA	3378141	8.459	high homology	4.51E-06	p < 0.0001	Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight	weak evidence	gttggCTTCAGgctccatgcctgcgGCTGATTAtgccActata
3388605	3390050	R	tldD	tldDp7	Sigma28	3390234	3390239	cAAACG	15	3390211	3390218	TCGGATAA	3390206	5.236	poor homology	2.98E-05	p < 0.0001	Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight	weak evidence	gcctaCAAACGgaacataaccgtaggTCGGATAAggcgTttacg
3421445	3421564	R	rrfF	rrfFp2	Sigma28	3421756	3421761	cAGAAG	14	3421734	3421741	GCCGATGG	3421729	7.749	good homology	6.93E-06	p < 0.0001	Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight	weak evidence	gaactCAGAAGtgaaacgccgtagcGCCGATGGtagtGtgggg
3475929	3476519	R	slyD	slyDp5	Sigma28	3476590	3476595	tTTAAG	14	3476568	3476575	GCTGCAGA	3476562	4.339	poor homology	8.70E-05	p < 0.0001	Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight	weak evidence	gttttTTTAAGctagtgagtacacgGCTGCAGAattccGctaca
3523611	3524171	R	nudE	nudEp9	Sigma28	3524380	3524385	aTTAAG	15	3524357	3524364	GCTGATCA	3524351	6.016	poor homology	1.47E-05	p < 0.0001	Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight	weak evidence	gcatcATTAAGcacatcacagtaaccGCTGATCAtagcaAaccct
3524491	3526626	F	yrfF	yrfFp12	Sigma28	3524390	3524395	cTCAAG	15	3524411	3524418	GCCGATAG	3524425	9.126	high homology	8.92E-07	p < 0.0001	Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight	weak evidence	tgatgCTCAAGttaaactccacgcttGCCGATAGccaaccGcagaa
3527796	3528674	F	hslO	hslOp3	Sigma28	3527722	3527727	aAAAAG	15	3527743	3527750	TACGATTT	3527755	4.106	poor homology	4.92E-05	p < 0.0001	Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight	weak evidence	ggacaAAAAAGagcgccgcgacctgtTACGATTTaaacAcggcg
3534834	3535310	F	greB	greBp8	Sigma28	3534732	3534737	cTTAAG	14	3534752	3534759	GGCGAAAC	3534766	5.369	poor homology	3.23E-05	p < 0.0001	Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight	weak evidence	agcagCTTAAGtatacaatttattcGGCGAAACattattGattct
3553855	3554871	R	rtcA	rtcAp6	Sigma28	3554997	3555002	gTAAAG	14	3554975	3554982	GACGAAAT	3554970	7.229	good homology	1.09E-05	p < 0.0001	Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight	weak evidence	atgccGTAAAGatgccgaagtgatcGACGAAATcccgAtggcg
3602416	3603012	F	rsmD	rsmDp11	Sigma28	3602306	3602311	tTAACG	14	3602326	3602333	GCTAAAAA	3602338	5.779	poor homology	3.91E-05	p < 0.0001	Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight	weak evidence	cagcgTTAACGctatgtacatagcaGCTAAAAAaatgAtgaaa
3607978	3608535	F	dcrB	dcrBp8	Sigma28	3607902	3607907	tTAAAG	15	3607923	3607930	TGTGATAA	3607936	5.126	poor homology	1.45E-05	p < 0.0001	Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight	weak evidence	gcgagTTAAAGgttcgttatcagagtTGTGATAAgatggAtgaat
3632864	3633916	F	yhiM	yhiMp10	Sigma28	3632624	3632629	aTGAAG	15	3632645	3632652	GAAGATAA	3632658	6.806	good homology	7.81E-06	p < 0.0001	Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight	weak evidence	aaataATGAAGaataatccctccctgGAAGATAAttgtaAaaaac
3715333	3716307	F	ghrB	ghrBp2	Sigma28	3715177	3715182	cAGAAG	15	3715198	3715205	GCCGTGTA	3715212	2.996	poor homology	8.87E-05	p < 0.0001	Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight	weak evidence	caccgCAGAAGgtaaggcgcaaaaccGCCGTGTAgaaattAcctta
3750015	3750989	F	yiaU	yiaUp6	Sigma28	3749920	3749925	aAAAAG	15	3749941	3749948	GCTTACAA	3749955	3.236	poor homology	0.000108366	p < 0.001	Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight	weak evidence	agataAAAAAGagtcggcataataatGCTTACAAtttctcCggtgc
3813150	3813791	R	pyrE	pyrEp5	Sigma28	3814035	3814040	tTGAAG	14	3814013	3814020	ACCGACAT	3814008	6.219	good homology	2.65E-05	p < 0.0001	Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight	weak evidence	atacgTTGAAGactctgccgcagagACCGACATgaacGtagtg
3909862	3911691	R	glmS	glmSp2	Sigma28	3911862	3911867	gTAAAG	14	3911840	3911847	GCCGGCTA	3911834	5.159	poor homology	5.60E-05	p < 0.0001	Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight	weak evidence	gtccgGTAAAGaaaaagtgattctgGCCGGCTAacccgGtcaca
3937208	3938635	R	hsrA	hsrAp6	Sigma28	3938757	3938762	aTAAAG	14	3938735	3938742	GGCGATTG	3938729	5.569	poor homology	2.57E-05	p < 0.0001	Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight	weak evidence	cagtgATAAAGctggatctgcatcaGGCGATTGtcgatGcgatt
3944895	3944971	F	aspT	aspTp1	Sigma28	3944771	3944776	cAGAAG	14	3944791	3944798	GCCGATGG	3944803	7.749	good homology	6.93E-06	p < 0.0001	Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight	weak evidence	gaactCAGAAGtgaaacgccgtagcGCCGATGGtagtGtgggg
3944980	3945055	F	trpT	trpTp2	Sigma28	3944771	3944776	cAGAAG	14	3944791	3944798	GCCGATGG	3944803	7.749	good homology	6.93E-06	p < 0.0001	Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight	weak evidence	gaactCAGAAGtgaaacgccgtagcGCCGATGGtagtGtgggg
3945151	3945990	R	hdfR	hdfRp6	Sigma28	3946211	3946216	cTCAAG	15	3946188	3946195	GATGGTGA	3946183	4.316	poor homology	2.89E-05	p < 0.0001	Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight	weak evidence	tgacgCTCAAGcagttgtgcctctttGATGGTGAaatcAccatg
3946472	3947992	R	yifB	yifBp9	Sigma28	3948035	3948040	cTACAG	14	3948013	3948020	GCACATAA	3948007	5.829	poor homology	3.17E-05	p < 0.0001	Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight	weak evidence	gcgggCTACAGcagcgatatcttatGCACATAAtggtgActcaa
4005780	4006400	F	rhtC	rhtCp2	Sigma28	4005728	4005733	aAAAAG	15	4005749	4005756	TCCGTAAA	4005762	3.866	poor homology	6.91E-05	p < 0.0001	Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight	weak evidence	gcataAAAAAGtgccagtatgaagacTCCGTAAAcgtttCccccg
4016878	4017633	F	ubiE	ubiEp4	Sigma28	4016737	4016742	aTGAAG	14	4016757	4016764	GATGAATA	4016770	6.969	good homology	1.34E-05	p < 0.0001	Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight	weak evidence	gaatgATGAAGcttatcaacgcgatGATGAATAtaatcAgcagt
4062386	4063789	R	yihO	yihOp3	Sigma28	4064021	4064026	cTGACG	14	4063999	4064006	GCCGAACG	4063994	5.629	poor homology	3.04E-05	p < 0.0001	Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight	weak evidence	ggatgCTGACGcaaattggctatgtGCCGAACGtcgcAcaggc
4086130	4087878	R	frvR	frvRp4	Sigma28	4087953	4087958	cTCACG	14	4087931	4087938	TCTGACGA	4087925	5.859	poor homology	3.91E-05	p < 0.0001	Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight	weak evidence	ctctgCTCACGctgatacggggtttTCTGACGAccttaActgcg
4142018	4144315	F	pflD	pflDp4	Sigma28	4141848	4141853	aTCAAG	15	4141869	4141876	GCTGGCAA	4141881	4.366	poor homology	4.63E-05	p < 0.0001	Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight	weak evidence	tcggcATCAAGtttgaagagcgttttGCTGGCAAgaccAtcgtg
4198589	4199284	F	yjaH	yjaHp1	Sigma28	4198500	4198505	gTAAAG	14	4198520	4198527	GCAGCTAA	4198534	4.679	poor homology	9.90E-05	p < 0.0001	Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight	weak evidence	gaccgGTAAAGaaatcaaaattgccGCAGCTAAcgtaccGgcatt
4202665	4203954	R	purD	purDp1	Sigma28	4204037	4204042	aTGACG	14	4204015	4204022	GCCGACGA	4204009	9.189	high homology	2.33E-06	p < 0.0001	Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight	weak evidence	ccgtgATGACGaagtgattgccgccGCCGACGAgcacgGtattg
4211257	4211640	F	yjaA	yjaAp4	Sigma28	4211111	4211116	cAGAAG	14	4211131	4211138	GCCGATGG	4211143	7.749	good homology	6.93E-06	p < 0.0001	Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight	weak evidence	gaactCAGAAGtgaaacgccgtagcGCCGATGGtagtGtgggg
4228377	4229249	F	rluF	rluFp6	Sigma28	4228151	4228156	tAAAAG	15	4228172	4228179	TCCGGTTA	4228185	3.776	poor homology	7.12E-05	p < 0.0001	Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight	weak evidence	ctcaaTAAAAGcagttccattacttcTCCGGTTAgtaagAaatca
4272783	4273064	R	yjcB	yjcBp4	Sigma28	4273243	4273248	tAAAAG	15	4273220	4273227	GCTAACAA	4273213	3.236	poor homology	0.000103081	p < 0.001	Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight	weak evidence	agcaaTAAAAGtcacggcctaatatgGCTAACAAacaatcAattgt
4294459	4295148	R	yjcO	yjcOp3	Sigma28	4295381	4295386	cTTAAG	15	4295358	4295365	GCCGGAGT	4295353	4.516	poor homology	2.78E-05	p < 0.0001	Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight	weak evidence	gaaaaCTTAAGcccgattacgaaaacGCCGGAGTacaaAtactg
4352977	4354434	R	yjdL	yjdLp4	Sigma28	4354558	4354563	tTCACG	14	4354536	4354543	GCTGATGG	4354530	5.139	poor homology	5.71E-05	p < 0.0001	Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight	weak evidence	cgataTTCACGgtgcataccgtcagGCTGATGGccgctAtaccg
4435730	4436668	F	ytfI	ytfIp11	Sigma28	4435606	4435611	tTAAAG	15	4435627	4435634	GCTAATAA	4435640	6.756	good homology	4.60E-06	p < 0.0001	Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight	weak evidence	tgtatTTAAAGtgcaaaaattcaattGCTAATAAgttacAtttta
4455337	4455888	R	yjgA	yjgAp5	Sigma28	4456132	4456137	aTAACG	15	4456109	4456116	GCCGGTGG	4456104	3.576	poor homology	5.95E-05	p < 0.0001	Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight	weak evidence	tcaccATAACGcgtgcttacgctaatGCCGGTGGtcttGctgac
4455337	4455888	R	yjgA	yjgAp9	Sigma28	4456116	4456121	cTAATG	14	4456094	4456101	GACGGCAA	4456088	5.099	poor homology	6.25E-05	p < 0.0001	Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight	weak evidence	ttacgCTAATGccggtggtcttgctGACGGCAActtccGcaccg
4455337	4455888	R	yjgA	yjgAp11	Sigma28	4456098	4456103	cTGACG	15	4456075	4456082	TCCGATTT	4456069	7.086	good homology	5.03E-06	p < 0.0001	Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight	weak evidence	tcttgCTGACGgcaacttccgcaccgTCCGATTTgcctgAggcca
4472885	4473337	F	tabA	tabAp5	Sigma28	4472773	4472778	cTGCCG	14	4472793	4472800	GACAATAA	4472806	6.449	good homology	3.10E-05	p < 0.0001	Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight	weak evidence	agcgcCTGCCGataagttgtgataaGACAATAAttcacGcgtta
4517361	4518347	R	yjhU	yjhUp8	Sigma28	4518592	4518597	aAAAAG	15	4518569	4518576	TTCGATTA	4518563	3.706	poor homology	7.95E-05	p < 0.0001	Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight	weak evidence	cgatcAAAAAGgggcgatattgaaccTTCGATTAtgcttGatggg