# Reference: # "Griffiths-Jones Sam., Moxon Simon., Marshall Mhairi., Khanna Ajay., Eddy Sean R., Bateman Alex. 2005 Rfam: annotating # non-coding RNAs in complete genomes. Nucleic Acids Res 33:D121-4" # # Table name: RFAM # (1) RFAM_ID # (2) GENE_NAME # (3) RFAM_TYPE # (4) RFAM_DESCRIPTION # (5) RFAM_SCORE # (6) RFAM_STRAND # (7) RFAM_POSLEFT # (8) RFAM_POSRIGHT # (9) RFAM_SEQUENCE ECK120026283 alx Cis-reg; riboswitch yybP-ykoY element 61.83 3236389 3236528 gucauacuuuGUUACCUGCAAAGGGGAGUAACUUCAUUGCCGGUCGAUCGUCAUUACGAUGUGUGAAAAAACACAUCCGGUCACCGGGCAACCCGAAAGGAAUACGCAGACGUAUUCCUUUUUUGUUGUAAGUGAGACCUUGCCGGAAGGcgaggucuau ECK120026288 btuB Cis-reg; riboswitch Cobalamin riboswitch 105.66 4161407 4161597 uuguuacaacCUGUAGCAUCCACUUGCCGGUCCUGUGAGUUAAUAGGGAAUCCAGUGCGAAUCUGGAGCUGACGCGCAGCGGUAAGGAAAGGUGCGAUGAUUGCGUUAUGCGGACACUGCCAUUCGGUGGGAAGUCAUCAUCUCUUAGUAUCUUAGAUACCCCUCCAAGCCCGAAGACCUGCCGGCCAACGUCGCAUCUGGuucucaucau ECK120026287 lysC Cis-reg; riboswitch Lysine riboswitch 71.41 4231348 4231544 ugcgcuagcgCAGGCCAGAAGAGGCGCGUUGCCCAAGUAACGGUGUUGGAGGAGCCAGUCCUGUGAUAACACCUGAGGGGGUGCAUCGCCGAGGUGAUUGAACGGCUGGCCACGUUCAUCAUCGGCUACAGGGGCUGAAUCCCCUGGGUUGUCACCAGAAGCGUUCGCAGUCGGGCGUUUCGCAAGUGGUGGAGCACUUCUGGGUGAaaauaguagc ECK120026294 proK Cis-reg RtT RNA 49.96 3706471 3706641 cuaucaccgaCCAAAUUCGAAAAGCCUGCUCAACGAGCAGGCUUUUUUGCAUCUGCAGCUCAUGAGGAUGAGAACCUCCGGGGGCAGGGAGGUUCGACUCGAGCGAAGCGAGAGAACGUUGCGCCAGCAACGGCCCGCAGGGCGAGCCACGAAGUGGCGAGUAAUCCUCUAUCACCGACCAaauucgaaaa ECK120026279 ribB Cis-reg; riboswitch FMN riboswitch (RFN element) 141.38 3182592 3182740 uagugaauccGCUUAUUCUCAGGGCGGGGCGAAAUUCCCCACCGGCGGUAAAUCAACUCAGUUGAAAGCCCGCGAGCGCUUUGGGUGCGAACUCAAAGGACAGCAGAUCCGGUGUAAUUCCGGGGCCGACGGUUAGAGUCCGGAUGGGAGAGAGUAACGauucugucgg ECK120026278 rne Cis-reg RNase E 5' UTR element 138.58 1143615 1143951 uaaugaggccGUUUCCGUGUCCAUCCUUGUUAAAACAAGAAAUUUUACGGAAUAACCCAUUUUGCCCGACCGAUCAUCCACGCAGCAAUGGCGUAAGACGUAUUGAUCUUUCAGGCAGUUAGCGGGCUGCGGGUUGCAGUCCUUACCGGUAGAUGGAAAUAUUUCUGGAGAGUAAUACCCAGUCUGUUUCUUUGAUAAUUGCGCUGUUUUUCCGCAUGAAAAACGGGCAACCGACACUCUGCGCCUCUUUGAGCUGACGAUAACCGUGAGGUUGGCGACGCGACUAGACACGAGGCCAUCGGUUCACACCCGGAAAGGCGUUACUUUGCCCGCAGCUUAGUCGUCAAuguaagaaua ECK120026286 rpsM Cis-reg Alpha operon ribosome binding site 102.2 3440461 3440572 ucuuuuguauGUCUGUGCGUUUCCAUUUGAGUAUCCUGAAAACGGGCUUUUCAGCAUGGAACGUACAUAUUAAAUAGUAGGAGUGCAUAGUGGCCCGUAUAGCAGGCAUUAACAUUCCUGAUcauaagcaug ECK120026285 rpsO Cis-reg Ribosomal S15 leader 79.69 3309650 3309764 uaacguacacUGGGAUCGCUGAAUUAGAGAUCGGCGUCCUUUCAUUCUAUAUACUUUGGAGUUUUAAAAUGUCUCUAAGUACUGAAGCAACAGCUAAAAUCGUUUCUGAGUUUGGUCGUGACGCAaacgacaccg ECK120026292 rttR Cis-reg RtT RNA 194.68 1286289 1286459 ccaucacuuuCAAAAGUCCCUGAACUUCCCAACGAAUCCGCAAUUAAAUAUUCUGCCCAUGCGGGGAAGGAUGAGAAGCUUCGACCAAGGUUCGACUCGAGCGCCAGCGAGAGAGCGUUGCCGCAGGCAACGACCCGAAGGGCGAAGCGCGCAGCGCUGAGUAAUCCUUCCCCCACCACCAucacuuucaa ECK120026280 tbpA Cis-reg; riboswitch TPP riboswitch (THI element) 78.84 75511 75610 uacacuaacgCCGUUCUCAACGGGGUGCCACGCGUACGCGUGCGCUGAGAAAAUACCCGUCGAACCUGAUCCGGAUAACGCCGGCGAAGGGAUUUGAGGCUCCUUCUCAAguccuuugcc ECK120026282 thiC Cis-reg; riboswitch TPP riboswitch (THI element) 85.65 4194203 4194303 uugcggggcuAAUUUCUUGUCGGAGUGCCUUAACUGGCUGAGACCGUUUAUUCGGGAUCCGCGGAACCUGAUCAGGCUAAUACCUGCGAAGGGAACAAGAGUUAAUCUGCUaucgcaucgc ECK120026281 thiM Cis-reg; riboswitch TPP riboswitch (THI element) 80.1 2183358 2183454 aucaucgcaaCCAAACGACUCGGGGUGCCCUUCUGCGUGAAGGCUGAGAAAUACCCGUAUCACCUGAUCUGGAUAAUGCCAGCGUAGGGAAGUCACGGACCACCAGGucauugcuuc ECK120026295 thrA Cis-reg Threonine operon leader 118.61 184 310 agaguacacaACAUCCAUGAAACGCAUUAGCACCACCAUUACCACCACCAUCACCAUUACCACAGGUAACGGUGCGGGCUGACGCGUACAGGAAACACAGAAAAAAGCCCGCACCUGACAGUGCGGGCUUUUUUUUUcgaccaaagg ECK120026291 tpr Cis-reg RtT RNA 191.27 1286111 1286281 ccaucacuuuCAAAAGUCCCUGAACUCUCAAGCGAAUCCGCAAUCAAAUAUUCUGCCCAUGCGGGGAAGGAUGAGAAGCUUCGACUAAGGUUCGGCUCGAGCGUCAGCGAGAGAGCGUUGCCGCAGGCAACGACCCGAAGGGCGAAGCGCGCAGCGCUGAGUAAUCCUUCCCCCACCACCAucacuuucaa ECK120026290 tpr Cis-reg RtT RNA 186.72 1285933 1286103 ccaucacuuuCAAAAGCCCCGGAAUUCUCAAACGAAUCCGCAAUCAAAUAUUCUGCCCAAGCGGGGAAGGAUGAGAAGCUUCGACCAAGGUUCGACUUGAGCGCCAGCGAGAGAGCGUUGCCGCAGGCAACGACCCGAAGGGCGAAGCGCGCAGCGCUGAGUAAUCCUUCCCCCACCACCAucgcuuccuu ECK120026293 tyrT Cis-reg RtT RNA 175.22 1286586 1286755 caccauaauuCACCACAGCGAUGUGGUAACUUCGGUGAGAUUGUGAAAGUUUGCACUCAUCGGGGAAGGGUGAGAACCUUCGACUAAGGUUCGAUUCGAGCGAAAGCGAGAGAACGUUGCCACAGGCAACGGCCCGAAGGGUGAGGAGCGAAGCGACGAAUAAUCCUUCCCCCACCACCAucucaagcau ECK120026289 ybaB Cis-reg; frameshift DnaX ribosomal frameshifting element 14.32 492580 492644 uugcagcgcgUGCAGGGAGCAACCAAAGCAAAAAAGAGUGAACCGGCAGCCGCUACCCGCGCGCGGCCGGUGAAUaacgcugcgc ECK120026277 ycjN Cis-reg Selenocysteine insertion sequence 14.03 1369239 1369298 guuuaacuucCUCGCCUCUCACGAUGGCAUCGGGCUAAACCCGCUACGGGGCUUGUUGCCUGAAAGCGAAauauuagagc ECK120026284 yebN Cis-reg; riboswitch yybP-ykoY element 85.24 1903481 1903603 uguuaagguuGCGCCCUCAUUUGGGGAGUAGCCGAUUUCCAGAUUCCGGAAAUGUACGUGUCAACAUACUCGUUGCAAAACGUGGCACGUACGGACUGAAUACUUUCAGUCAGGCGAGACCAUAUGCACAUCAaucgcuaugc ECK120026276 yjhV Cis-reg Selenocysteine insertion sequence 15.73 4510979 4511042 gcgaggaucaGUUUGUUUCUGUCAUGGGUAUGACGAAAUCCGCCUCCUGCGGUCAUGACCAGCAGCCAGCUCACgccgcccccg