RegulonDB

RegulonDB RegulonDB 11.2: RegulonDB Summary History

RegulonDB Summary History

*Object*	*1997*	*1998*	*1999*	*2000*	*2001*	*2002*	*2003*	*2004*	*2005*	2006	Jan 2007 release 5.6	Jun 2007 release 5.7	Sep 2007 release 5.8	Jan 2008 release 6.0	Apr 2008 release 6.1	Jul 2008 release 6.2	Jun 2009 *release 6.3	Jun 2009 release 6.4	Mar 2010 release 6.7	Aug 2010 release 6.8	Jan 2011 release 7.0	May 2011 release 7.2	Nov 2011 release 7.3	March 2012 release 7.4	August 2012 release 7.5	December 2012 release 8.1	April 2013 release 8.2	Jun 2013 release 8.3	Nov 2013 release 8.5	April 2014 release 8.6	February 2015 release 8.7	May 2015 release 8.8	Sep 2015 release 9.0	April 2016 release 9.1	Sep 2016 release 9.2	February 2017 release 9.3	May 2017 release 9.4	Jun 2018 release 10.0	Jul 2019 release 10.6	May 2020 release 10.7	Oct 2020 release 10.8	April 2021 release 10.9	December 2022 release 11.1
Regulons	99	83	83	165	166	172	179	183	266	325	327	332	337	349	352	361	365	374	387	397	401	416	426	438	439	447	453	455	456	460	469	475	475	479	480	480	488	493	537	540	544	549	556
Regulatory Interactions	533	433	433	642	935	990	1119	1303	1597	2025	2305	2110	2147	2171	2237	2342	2369	2396	2594	2644	2697	2767	2894	2954	3002	3055	3088	3112	3122	3148	3177	3195	3195	3231	3239	3239	3277	3355	3466	3473	3493	3937	3952
small RNA Interactions													15	16	18	51	51	51	51	51	203	203	202	202	219	227	227	227	227	227	227	227	227	222	224	224	224	235	235	235	235	242	247
Functional conformation of Transcriptional Regulators				83	201	203	221	234	150¹	165	166	208	214	176	177	185	225	232	233	235	232	238	238	241	243	352	355	356	355	356	357	358	358	363	365	365	370	378	383	408	409	410	420
Effectors	35	36	36	36	66	66	67	68	73	61	61	62	64	65	65	70	72	75	77	75	76	74	73	73	74	122	122	121	122	122	122	122	122	122	124	124	124	131	137	134	134	134	138
Transcriptional Factors	99	83	83	165	166	170	179	183	180²	153^³	153	154	157	159	160	163	167	169	176	175	177	179	188	190	185	188	201	202	202	202	203	204	204	208	208	208	213	215	217	220	220	221	229
TFs Binding Sites			406	469	750	812	950	1129	1230	1386	1393	1463	1491	1480	1560	1630	1652	1584	1861	1894	1940	1988	2037	2093	2109	2155	2184	2196	2214	2214	2241	2253	2253	2280	2285	2285	2320	2833	3020	6624	5912	6916	4147
Promoters	300	239	432	624	746	783	860	939	1160	1648	1230	1274	1343	1372	1492	1754	1762	1771	1840	1863	1878	1897	3736	3747	3754	8547	8550	8550	8551	8555	8580	8583	8583	8597	8597	8597	8605	8615	8623	8660	8663	8791	8795
Genes	542	4656	4405	4405	4405	4405	4408	4408	4479	4547	4548	4575	4575	4578	4579	4579	4579	4602	4605	4605	4621	4622	4635	4635	4634	4637	4637	4639	4640	4639	4641	4641	4641	4650	4652	4652	4679	4694	4686	4732	4745	4708	4736
Transcription units	292	230	374	528	657	694	747	803	1230	3133	3063	3150	3187	3199	3277	3356	3359	3356	3386	3397	3409	3422	4463	4472	4477	4490	4505	4509	4510	4522	3538	3541	3541	3549	3547	3547	3556	3560	3553	3597	3599	3705	3696
Terminators			40	86	106	108	118	122	128	151	151	162	172	177	182	186	193	221	228	234	240	244	246	247	249	251	252	258	259	261	273	274	274	279	280	280	282	306	360	361	361	366	366
RBSs - Shine-Dalgarno			59	98	133	134	153	158	179	179	179	179	179	179	179	179	179	179	179	179	179	179	179	179	179	179	179	179	179	179	179	179	179	179	179	179	179	179	179	179	179	179	179
Attenuators										751	751	751	751	751	751	751	751	751	751	751	751	751	751	751	748	751	751	751	752	752	752	752	752	752	752	752	752	752	752	540	751	751	751
Riboswitches										20	20	20	20	20	20	20	20	20	20	20	20	20	20	20	20	20	20	20	20	20	20	20	20	20	51	51	51	51	51	51	51	51	51
Product:
RNAs			115	115	115	115	116	117	117	184	184	190	190	114	114	114	114	114	114	114	114	114	114	114	216	227	227	218	219	219	220	221	221	231	233	233	222	108				203
small RNAs														81	81	81	81	81	81	81	92	92	109	94	108	108	108	110	111	111	111	113	113	113	125	125	114	117	116	120	132	94	111
Polypetides			4207	4290	4290	4290	4292	4290	4290	4273	4273	4293	4293	4293	4290	4290	4319	4428	4396	4509	4432	4432	4314	4442	4463	4358	4358	4358	4358	4358	4359	4358	4358	4356	4587	4353	4355	4340	4378		4419	4420	4432
External References⁴	2050	2011	4394	4704	4943	5053	5224	1952	2955	3421	3522	3610	3647	3840	3905	3963	4020	4091	4187	4274	4274	4336	4336	4596	4667	4880	5021	5096	5156	5398	5803	6008	6008	6581	6814	7122	7357	14477	15187	15715	9682	10174	10979
Synonyms		681	3525	3525	3525	3544	3578	3612	11945	16601	16591	16681	16746	16383	16403	16403	16415	16535	21399	16994	20865	20918	16732	16870	16946	17158	17203	17155	17336	12308	12483	12607	12607	12647	12898	17415	18473	24467	30226	30456	30574	30609	30794
Functional Classes									770	1609	1609	2948	3003	4058	5023	5157	5197	5486	5721	5800	5914	6042	6357	6448	6543	6813	6970	7139	7211	7248	7476	7594	7594	7788	7956	8035	8254	8349	8520	9461	8641	8698	8858
Gensor Units																				50	50	51	51	51	51	51	51	51	53	53	53	53	53	53	53	53	53	53	53	53	53	53	53

¹Only the active conformations.
² From the total 322 transcriptional DNA-binding regulators, 180 have experimental evidence and the rest are computationally predicted based on their helix-turn-helix DNA binding motif.

³Previously, there was a list of 180 transcriptional regulators experimentally determined (with 244 associated functional conformations), but as 27 of these putative regulators have no regulatory interaction known they were deleted, leaving only 153 known regulators. In addition there are 158 computationally predicted, making a total of 311 estimated regulators.

⁴Only PUBMED references

RegulonDB