RegulonDB Regulatory Networks

Regulatory Networks


We offer graphic displays of different representations of the complete collection of manually curated regulatory interactions.


Description
File

TF-Gene network. Visualization of all interactions between TFs and regulated genes (TF-gene, full network). In this transcriptional network, the nodes represent the TFs and their regulated genes; the edges represent the relation of the transcription regulation and the arrows indicate a relation directed from the TFs to the genes they regulate.

Download File 1. TF-Gene (Full network)

TF-Operon network.Visualization of interactions between TF and regulated operon (TF-operon). In this transcriptional network, the nodes represent the TFs and their regulated genes; the edges represent the relation of the transcription regulation and the arrows indicate a relation directed from the TFs to the operons they regulate.

Download File 2. TF-Operon

TF-TF network.Visualization of interactions between Transcription Factors (TF-TF). In this transcriptional network, the nodes represent the TFs and the edges are the physical interactions between them.

Download File 3. TF-TF

Sigma-Gene network.Visualization of interactions between sigma factors and regulated genes (Sigma-gene). In this transcriptional network, the nodes represent the sigma factors and the genes expressed by each factor; the edges represent the relation of the sigma factors and their expressed genes and arrows indicate a relation directed from the sigma factors to the genes they expressed.

Download File 5. Sigma-Gene

Sigma-Operon network.Visualization of interactions between sigma factors and regulated operons (Sigma-operon). In this transcriptional network, the nodes represent the sigma factors and the operons expressed by each factor; the edges represent the relation of the sigma factors and their expressed operons and arrows indicate a relation directed from the sigma factors to the genes they expressed.

Download File 6. Sigma-Operon




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