RegulonDB

Name:

borD -> borD_mRNA

Description:

Transcription of transcription unit borD. Reaction activation by PhoP-phosphate.

Type:

transcription

Pathway Components:

borD - PhoP-phosphate -> borD_mRNA

Components:

Function	Name	Type
activator	PhoP-phosphate	complex
reactant	borD	gene
product	borD_mRNA	RNA

Name:

cysB -> cysB_mRNA

Description:

Transcription of transcription unit cysB. Reaction activation by PhoP-phosphate.

Type:

transcription

Pathway Components:

cysB - PhoP-phosphate -> cysB_mRNA

Components:

Function	Name	Type
activator	PhoP-phosphate	complex
reactant	cysB	gene
product	cysB_mRNA	RNA

Name:

fadL -> fadL_mRNA

Description:

Transcription of transcription unit fadL. Reaction activation by PhoP-phosphate.

Type:

transcription

Pathway Components:

fadL - PhoP-phosphate -> fadL_mRNA

Components:

Function	Name	Type
activator	PhoP-phosphate	complex
reactant	fadL	gene
product	fadL_mRNA	RNA

Name:

gadEF -> gadEF_mRNA

Description:

Transcription of transcription unit gadEF. Reaction activation by PhoP-phosphate.

Type:

transcription

Pathway Components:

gadEF - PhoP-phosphate -> gadEF_mRNA

Components:

Function	Name	Type
activator	PhoP-phosphate	complex
reactant	gadEF	gene
product	gadEF_mRNA	RNA

Name:

gadW -> gadW_mRNA

Description:

Transcription of transcription unit gadW. Reaction activation by PhoP-phosphate.

Type:

transcription

Pathway Components:

gadW - PhoP-phosphate -> gadW_mRNA

Components:

Function	Name	Type
activator	PhoP-phosphate	complex
reactant	gadW	gene
product	gadW_mRNA	RNA

Name:

glgAP -> glgAP_mRNA

Description:

Transcription of transcription unit glgAP. Reaction activation by PhoP-phosphate.

Type:

transcription

Pathway Components:

glgAP - PhoP-phosphate -> glgAP_mRNA

Components:

Function	Name	Type
activator	PhoP-phosphate	complex
reactant	glgAP	gene
product	glgAP_mRNA	RNA

Name:

glgBXCAP -> glgBXCAP_mRNA

Description:

Transcription of transcription unit glgBXCAP. Reaction activation by PhoP-phosphate.

Type:

transcription

Pathway Components:

glgBXCAP - PhoP-phosphate -> glgBXCAP_mRNA

Components:

Function	Name	Type
activator	PhoP-phosphate	complex
reactant	glgBXCAP	gene
product	glgBXCAP_mRNA	RNA

Name:

hdeAB-yhiD -> hdeAB-yhiD_mRNA

Description:

Transcription of transcription unit hdeAB-yhiD. Reaction activation by PhoP-phosphate.

Type:

transcription

Pathway Components:

hdeAB-yhiD - PhoP-phosphate -> hdeAB-yhiD_mRNA

Components:

Function	Name	Type
activator	PhoP-phosphate	complex
reactant	hdeAB-yhiD	gene
product	hdeAB-yhiD_mRNA	RNA

Name:

hdeD -> hdeD_mRNA

Description:

Transcription of transcription unit hdeD. Reaction activation by PhoP-phosphate.

Type:

transcription

Pathway Components:

hdeD - PhoP-phosphate -> hdeD_mRNA

Components:

Function	Name	Type
activator	PhoP-phosphate	complex
reactant	hdeD	gene
product	hdeD_mRNA	RNA

Name:

hemL -> hemL_mRNA

Description:

Transcription of transcription unit hemL. Reaction activation by PhoP-phosphate.

Type:

transcription

Pathway Components:

hemL - PhoP-phosphate -> hemL_mRNA

Components:

Function	Name	Type
activator	PhoP-phosphate	complex
reactant	hemL	gene
product	hemL_mRNA	RNA

Name:

iraM -> iraM_mRNA

Description:

Transcription of transcription unit iraM. Reaction activation by PhoP-phosphate.

Type:

transcription

Pathway Components:

iraM - PhoP-phosphate -> iraM_mRNA

Components:

Function	Name	Type
activator	PhoP-phosphate	complex
reactant	iraM	gene
product	iraM_mRNA	RNA

Name:

malS -> malS_mRNA

Description:

Transcription of transcription unit malS. Reaction activation by PhoP-phosphate.

Type:

transcription

Pathway Components:

malS - PhoP-phosphate -> malS_mRNA

Components:

Function	Name	Type
activator	PhoP-phosphate	complex
reactant	malS	gene
product	malS_mRNA	RNA

Name:

metBL -> metBL_mRNA

Description:

Transcription of transcription unit metBL. Reaction activation by PhoP-phosphate.

Type:

transcription

Pathway Components:

metBL - PhoP-phosphate -> metBL_mRNA

Components:

Function	Name	Type
activator	PhoP-phosphate	complex
reactant	metBL	gene
product	metBL_mRNA	RNA

Name:

mgrB -> mgrB_mRNA

Description:

Transcription of transcription unit mgrB. Reaction activation by PhoP-phosphate.

Type:

transcription

Pathway Components:

mgrB - PhoP-phosphate -> mgrB_mRNA

Components:

Function	Name	Type
activator	PhoP-phosphate	complex
reactant	mgrB	gene
product	mgrB_mRNA	RNA

Name:

mgrR -> mgrR_mRNA

Description:

Transcription of transcription unit mgrR. Reaction activation by PhoP-phosphate.

Type:

transcription

Pathway Components:

mgrR - PhoP-phosphate -> mgrR_mRNA

Components:

Function	Name	Type
activator	PhoP-phosphate	complex
reactant	mgrR	gene
product	mgrR_mRNA	RNA

Name:

mgtLA -> mgtLA_mRNA

Description:

Transcription of transcription unit mgtLA. Reaction activation by PhoP-phosphate.

Type:

transcription

Pathway Components:

mgtLA - PhoP-phosphate -> mgtLA_mRNA

Components:

Function	Name	Type
activator	PhoP-phosphate	complex
reactant	mgtLA	gene
product	mgtLA_mRNA	RNA

Name:

mgtS -> mgtS_mRNA

Description:

Transcription of transcription unit mgtS. Reaction activation by PhoP-phosphate.

Type:

transcription

Pathway Components:

mgtS - PhoP-phosphate -> mgtS_mRNA

Components:

Function	Name	Type
activator	PhoP-phosphate	complex
reactant	mgtS	gene
product	mgtS_mRNA	RNA

Name:

nagA -> nagA_mRNA

Description:

Transcription of transcription unit nagA. Reaction activation by PhoP-phosphate.

Type:

transcription

Pathway Components:

nagA - PhoP-phosphate -> nagA_mRNA

Components:

Function	Name	Type
activator	PhoP-phosphate	complex
reactant	nagA	gene
product	nagA_mRNA	RNA

Name:

ompT -> ompT_mRNA

Description:

Transcription of transcription unit ompT. Reaction activation by PhoP-phosphate.

Type:

transcription

Pathway Components:

ompT - PhoP-phosphate -> ompT_mRNA

Components:

Function	Name	Type
activator	PhoP-phosphate	complex
reactant	ompT	gene
product	ompT_mRNA	RNA

Name:

pagP -> pagP_mRNA

Description:

Transcription of transcription unit pagP. Reaction activation by PhoP-phosphate.

Type:

transcription

Pathway Components:

pagP - PhoP-phosphate -> pagP_mRNA

Components:

Function	Name	Type
activator	PhoP-phosphate	complex
reactant	pagP	gene
product	pagP_mRNA	RNA

Name:

phoPQ -> phoPQ_mRNA

Description:

Transcription of transcription unit phoPQ. Reaction activation by PhoP-phosphate. Reaction inhibition by PhoP-phosphate.

Type:

transcription

Pathway Components:

phoPQ - PhoP-phosphate - PhoP-phosphate -> phoPQ_mRNA

Components:

Function	Name	Type
activator	PhoP-phosphate	complex
inhibitor	PhoP-phosphate	complex
reactant	phoPQ	gene
product	phoPQ_mRNA	RNA

Name:

purHD -> purHD_mRNA

Description:

Transcription of transcription unit purHD. Reaction activation by PhoP-phosphate.

Type:

transcription

Pathway Components:

purHD - PhoP-phosphate -> purHD_mRNA

Components:

Function	Name	Type
activator	PhoP-phosphate	complex
reactant	purHD	gene
product	purHD_mRNA	RNA

Name:

rstAB -> rstAB_mRNA

Description:

Transcription of transcription unit rstAB. Reaction activation by PhoP-phosphate.

Type:

transcription

Pathway Components:

rstAB - PhoP-phosphate -> rstAB_mRNA

Components:

Function	Name	Type
activator	PhoP-phosphate	complex
reactant	rstAB	gene
product	rstAB_mRNA	RNA

Name:

rutABCDEFG -> rutABCDEFG_mRNA

Description:

Transcription of transcription unit rutABCDEFG. Reaction activation by PhoP-phosphate.

Type:

transcription

Pathway Components:

rutABCDEFG - PhoP-phosphate -> rutABCDEFG_mRNA

Components:

Function	Name	Type
activator	PhoP-phosphate	complex
reactant	rutABCDEFG	gene
product	rutABCDEFG_mRNA	RNA

Name:

slyB -> slyB_mRNA

Description:

Transcription of transcription unit slyB. Reaction activation by PhoP-phosphate. Reaction inhibition by PhoP-phosphate.

Type:

transcription

Pathway Components:

slyB - PhoP-phosphate - PhoP-phosphate -> slyB_mRNA

Components:

Function	Name	Type
activator	PhoP-phosphate	complex
inhibitor	PhoP-phosphate	complex
reactant	slyB	gene
product	slyB_mRNA	RNA

Name:

tolC-ygiABC -> tolC-ygiABC_mRNA

Description:

Transcription of transcription unit tolC-ygiABC. Reaction activation by PhoP-phosphate.

Type:

transcription

Pathway Components:

tolC-ygiABC - PhoP-phosphate -> tolC-ygiABC_mRNA

Components:

Function	Name	Type
activator	PhoP-phosphate	complex
reactant	tolC-ygiABC	gene
product	tolC-ygiABC_mRNA	RNA

Name:

ybjG -> ybjG_mRNA

Description:

Transcription of transcription unit ybjG. Reaction activation by PhoP-phosphate.

Type:

transcription

Pathway Components:

ybjG - PhoP-phosphate -> ybjG_mRNA

Components:

Function	Name	Type
activator	PhoP-phosphate	complex
reactant	ybjG	gene
product	ybjG_mRNA	RNA

Name:

yrbL -> yrbL_mRNA

Description:

Transcription of transcription unit yrbL. Reaction activation by PhoP-phosphate.

Type:

transcription

Pathway Components:

yrbL - PhoP-phosphate -> yrbL_mRNA

Components:

Function	Name	Type
activator	PhoP-phosphate	complex
reactant	yrbL	gene
product	yrbL_mRNA	RNA

Name:

acrAB -> acrAB_mRNA

Description:

Transcription of transcription unit acrAB. Reaction inhibition by PhoP-phosphate.

Type:

transcription

Pathway Components:

acrAB - PhoP-phosphate -> acrAB_mRNA

Components:

Function	Name	Type
inhibitor	PhoP-phosphate	complex
reactant	acrAB	gene
product	acrAB_mRNA	RNA

Name:

argD -> argD_mRNA

Description:

Transcription of transcription unit argD. Reaction inhibition by PhoP-phosphate.

Type:

transcription

Pathway Components:

argD - PhoP-phosphate -> argD_mRNA

Components:

Function	Name	Type
inhibitor	PhoP-phosphate	complex
reactant	argD	gene
product	argD_mRNA	RNA

Name:

dcuD -> dcuD_mRNA

Description:

Transcription of transcription unit dcuD. Reaction inhibition by PhoP-phosphate.

Type:

transcription

Pathway Components:

dcuD - PhoP-phosphate -> dcuD_mRNA

Components:

Function	Name	Type
inhibitor	PhoP-phosphate	complex
reactant	dcuD	gene
product	dcuD_mRNA	RNA

Name:

safA-ydeO -> safA-ydeO_mRNA

Description:

Transcription of transcription unit safA-ydeO. Reaction inhibition by PhoP-phosphate.

Type:

transcription

Pathway Components:

safA-ydeO - PhoP-phosphate -> safA-ydeO_mRNA

Components:

Function	Name	Type
inhibitor	PhoP-phosphate	complex
reactant	safA-ydeO	gene
product	safA-ydeO_mRNA	RNA

Name:

treR -> treR_mRNA

Description:

Transcription of transcription unit treR. Reaction inhibition by PhoP-phosphate.

Type:

transcription

Pathway Components:

treR - PhoP-phosphate -> treR_mRNA

Components:

Function	Name	Type
inhibitor	PhoP-phosphate	complex
reactant	treR	gene
product	treR_mRNA	RNA

Name:

ydeP -> ydeP_mRNA

Description:

Transcription of transcription unit ydeP. Reaction inhibition by PhoP-phosphate.

Type:

transcription

Pathway Components:

ydeP - PhoP-phosphate -> ydeP_mRNA

Components:

Function	Name	Type
inhibitor	PhoP-phosphate	complex
reactant	ydeP	gene
product	ydeP_mRNA	RNA

Name:

mgrB_mRNA -> MgrB

Description:

Translation of MgrB

Type:

translation

Pathway Components:

mgrB_mRNA -> MgrB

Components:

Function	Name	Type
product	MgrB	protein
reactant	mgrB_mRNA	RNA

Name:

dcuD_mRNA -> DcuD

Description:

Translation of DcuD

Type:

translation

Pathway Components:

dcuD_mRNA -> DcuD

Components:

Function	Name	Type
product	DcuD	protein
reactant	dcuD_mRNA	RNA

Name:

rutABCDEFG_mRNA -> RutA

Description:

Translation of RutA

Type:

translation

Pathway Components:

rutABCDEFG_mRNA -> RutA

Components:

Function	Name	Type
product	RutA	protein
reactant	rutABCDEFG_mRNA	RNA

Name:

Reduced FMN + oxygen + uracil -> flavin mononucleotide + ureidoperacrylic acid

Description:

Reaction transforming Reduced FMN, oxygen, uracil into flavin mononucleotide, ureidoperacrylic acid

Type:

state transition

Pathway Components:

Reduced FMN + oxygen + uracil - RutA -> flavin mononucleotide + ureidoperacrylic acid

Components:

Function	Name	Type
reactant	Reduced FMN	simple_molecule
catalyzer	RutA	protein
product	flavin mononucleotide	simple_molecule
reactant	oxygen	simple_molecule
reactant	uracil	simple_molecule
product	ureidoperacrylic acid	simple_molecule

Name:

Reduced FMN + thymine + oxygen -> (Z)-2-methylureidoperacrylic acid + flavin mononucleotide

Description:

Reaction transforming Reduced FMN, thymine, oxygen into (Z)-2-methylureidoperacrylic acid, flavin mononucleotide

Type:

state transition

Pathway Components:

Reduced FMN + thymine + oxygen - RutA -> (Z)-2-methylureidoperacrylic acid + flavin mononucleotide

Components:

Function	Name	Type
product	(Z)-2-methylureidoperacrylic acid	simple_molecule
reactant	Reduced FMN	simple_molecule
catalyzer	RutA	protein
product	flavin mononucleotide	simple_molecule
reactant	oxygen	simple_molecule
reactant	thymine	simple_molecule

Name:

rutABCDEFG_mRNA -> RutB

Description:

Translation of RutB

Type:

translation

Pathway Components:

rutABCDEFG_mRNA -> RutB

Components:

Function	Name	Type
product	RutB	protein
reactant	rutABCDEFG_mRNA	RNA

Name:

ureidoperacrylic acid -> peroxy aminoacrylate + carbamate

Description:

Reaction transforming ureidoperacrylic acid into peroxy aminoacrylate, carbamate

Type:

state transition

Pathway Components:

ureidoperacrylic acid - RutB -> peroxy aminoacrylate + carbamate

Components:

Function	Name	Type
catalyzer	RutB	protein
product	carbamate	simple_molecule
product	peroxy aminoacrylate	simple_molecule
reactant	ureidoperacrylic acid	simple_molecule

Name:

3-ureidoacrylate -> aminoacrylate + carbamate

Description:

Reaction transforming 3-ureidoacrylate into aminoacrylate, carbamate

Type:

state transition

Pathway Components:

3-ureidoacrylate - RutB -> aminoacrylate + carbamate

Components:

Function	Name	Type
reactant	3-ureidoacrylate	simple_molecule
catalyzer	RutB	protein
product	aminoacrylate	simple_molecule
product	carbamate	simple_molecule

Name:

(Z)-2-methylureidoperacrylic acid -> (Z)-2-methyl-peroxyaminoacrylate + carbamate

Description:

Reaction transforming (Z)-2-methylureidoperacrylic acid into (Z)-2-methyl-peroxyaminoacrylate, carbamate

Type:

state transition

Pathway Components:

(Z)-2-methylureidoperacrylic acid - RutB -> (Z)-2-methyl-peroxyaminoacrylate + carbamate

Components:

Function	Name	Type
product	(Z)-2-methyl-peroxyaminoacrylate	simple_molecule
reactant	(Z)-2-methylureidoperacrylic acid	simple_molecule
catalyzer	RutB	protein
product	carbamate	simple_molecule

Name:

rutABCDEFG_mRNA -> RutC

Description:

Translation of RutC

Type:

translation

Pathway Components:

rutABCDEFG_mRNA -> RutC

Components:

Function	Name	Type
product	RutC	protein
reactant	rutABCDEFG_mRNA	RNA

Name:

peroxy aminoacrylate + A(H2) -> aminoacrylate + acceptors

Description:

Reaction transforming peroxy aminoacrylate, A(H2) into aminoacrylate, acceptors

Type:

state transition

Pathway Components:

peroxy aminoacrylate + A(H2) - RutC -> aminoacrylate + acceptors

Components:

Function	Name	Type
reactant	A(H2)	simple_molecule
catalyzer	RutC	protein
product	acceptors	simple_molecule
product	aminoacrylate	simple_molecule
reactant	peroxy aminoacrylate	simple_molecule

Name:

rutABCDEFG_mRNA -> RutD

Description:

Translation of RutD

Type:

translation

Pathway Components:

rutABCDEFG_mRNA -> RutD

Components:

Function	Name	Type
product	RutD	protein
reactant	rutABCDEFG_mRNA	RNA

Name:

aminoacrylate -> malonate-S-ald + ammonium

Description:

Reaction transforming aminoacrylate into malonate-S-ald, ammonium

Type:

state transition

Pathway Components:

aminoacrylate - RutD -> malonate-S-ald + ammonium

Components:

Function	Name	Type
catalyzer	RutD	protein
reactant	aminoacrylate	simple_molecule
product	ammonium	simple_molecule
product	malonate-S-ald	simple_molecule

Name:

rutABCDEFG_mRNA -> RutE

Description:

Translation of RutE

Type:

translation

Pathway Components:

rutABCDEFG_mRNA -> RutE

Components:

Function	Name	Type
product	RutE	protein
reactant	rutABCDEFG_mRNA	RNA

Name:

malonate-S-ald -> hydracrylic acid

Description:

Reaction transforming malonate-S-ald into hydracrylic acid

Type:

state transition

Pathway Components:

malonate-S-ald - RutE -> hydracrylic acid

Components:

Function	Name	Type
catalyzer	RutE	protein
product	hydracrylic acid	simple_molecule
reactant	malonate-S-ald	simple_molecule

Name:

rutABCDEFG_mRNA -> RutF

Description:

Translation of RutF

Type:

translation

Pathway Components:

rutABCDEFG_mRNA -> RutF

Components:

Function	Name	Type
product	RutF	protein
reactant	rutABCDEFG_mRNA	RNA

Name:

rutABCDEFG_mRNA -> RutG

Description:

Translation of RutG

Type:

translation

Pathway Components:

rutABCDEFG_mRNA -> RutG

Components:

Function	Name	Type
product	RutG	protein
reactant	rutABCDEFG_mRNA	RNA

Name:

uracil_Ext -> uracil

Description:

Transport of uracil_Ext through a bacterial membrane, leading to the presence of uracil inside the cell.

Type:

transport

Pathway Components:

uracil_Ext - RutG -> uracil

Components:

Function	Name	Type
catalyzer	RutG	protein
product	uracil	simple_molecule
reactant	uracil_Ext	simple_molecule

Name:

ompT_mRNA -> OmpT

Description:

Translation of OmpT

Type:

translation

Pathway Components:

ompT_mRNA -> OmpT

Components:

Function	Name	Type
product	OmpT	protein
reactant	ompT_mRNA	RNA

Name:

protein -> peptide

Description:

Reaction transforming protein into peptide

Type:

state transition

Pathway Components:

protein - OmpT -> peptide

Components:

Function	Name	Type
catalyzer	OmpT	protein
product	peptide	simple_molecule
reactant	protein	simple_molecule

Name:

mgtLA_mRNA -> MgtL

Description:

Translation of MgtL

Type:

translation

Pathway Components:

mgtLA_mRNA -> MgtL

Components:

Function	Name	Type
product	MgtL	protein
reactant	mgtLA_mRNA	RNA

Name:

mgtLA_mRNA -> MgtA

Description:

Translation of MgtA

Type:

translation

Pathway Components:

mgtLA_mRNA -> MgtA

Components:

Function	Name	Type
product	MgtA	protein
reactant	mgtLA_mRNA	RNA

Name:

magnesium_Ext -> magnesium

Description:

Transport of magnesium_Ext through a bacterial membrane, leading to the presence of magnesium inside the cell.

Type:

transport

Pathway Components:

magnesium_Ext - MgtA -> magnesium

Components:

Function	Name	Type
catalyzer	MgtA	protein
product	magnesium	simple_molecule
reactant	magnesium_Ext	simple_molecule

Name:

acrAB_mRNA -> AcrA

Description:

Translation of AcrA

Type:

translation

Pathway Components:

acrAB_mRNA -> AcrA

Components:

Function	Name	Type
product	AcrA	protein
reactant	acrAB_mRNA	RNA

Name:

TolC + AcrA + AcrD -> AcrD-AcrA-TolC

Description:

Reaction transforming TolC, AcrA, AcrD into AcrD-AcrA-TolC

Type:

state transition

Pathway Components:

TolC + AcrA + AcrD -> AcrD-AcrA-TolC

Components:

Function	Name	Type
reactant	AcrA	protein
reactant	AcrD	protein
product	AcrD-AcrA-TolC	complex
reactant	TolC	protein

Name:

drug_Ext -> drug

Description:

Transport of drug_Ext through a bacterial membrane, leading to the presence of drug inside the cell.

Type:

transport

Pathway Components:

drug_Ext - AcrA-TolC-AcrB - AcrD-AcrA-TolC - AcrE-AcrF-TolC - EmrA-EmrB-TolC - EmrK-EmrY-TolC - TolC-MdtC-MdtB-MdtA - TolC-MdtE-MdtF -> drug

Components:

Show/Hide Components Table

Function	Name	Type
catalyzer	AcrA-TolC-AcrB	complex
catalyzer	AcrD-AcrA-TolC	complex
catalyzer	AcrE-AcrF-TolC	complex
catalyzer	EmrA-EmrB-TolC	complex
catalyzer	EmrK-EmrY-TolC	complex
catalyzer	TolC-MdtC-MdtB-MdtA	complex
catalyzer	TolC-MdtE-MdtF	complex
product	drug	simple_molecule
reactant	drug_Ext	simple_molecule

Name:

TolC + AcrA + AcrB -> AcrA-TolC-AcrB

Description:

Reaction transforming TolC, AcrA, AcrB into AcrA-TolC-AcrB

Type:

state transition

Pathway Components:

TolC + AcrA + AcrB -> AcrA-TolC-AcrB

Components:

Function	Name	Type
reactant	AcrA	protein
product	AcrA-TolC-AcrB	complex
reactant	AcrB	protein
reactant	TolC	protein

Name:

acriflavine_Ext -> acriflavine

Description:

Transport of acriflavine_Ext through a bacterial membrane, leading to the presence of acriflavine inside the cell.

Type:

transport

Pathway Components:

acriflavine_Ext - AcrA-TolC-AcrB -> acriflavine

Components:

Function	Name	Type
catalyzer	AcrA-TolC-AcrB	complex
product	acriflavine	simple_molecule
reactant	acriflavine_Ext	simple_molecule

Name:

chenodiol_Ext -> chenodiol

Description:

Transport of chenodiol_Ext through a bacterial membrane, leading to the presence of chenodiol inside the cell.

Type:

transport

Pathway Components:

chenodiol_Ext - AcrA-TolC-AcrB -> chenodiol

Components:

Function	Name	Type
catalyzer	AcrA-TolC-AcrB	complex
product	chenodiol	simple_molecule
reactant	chenodiol_Ext	simple_molecule

Name:

caprate_Ext -> caprate

Description:

Transport of caprate_Ext through a bacterial membrane, leading to the presence of caprate inside the cell.

Type:

transport

Pathway Components:

caprate_Ext - AcrA-TolC-AcrB -> caprate

Components:

Function	Name	Type
catalyzer	AcrA-TolC-AcrB	complex
product	caprate	simple_molecule
reactant	caprate_Ext	simple_molecule

Name:

hexane_Ext -> hexane

Description:

Transport of hexane_Ext through a bacterial membrane, leading to the presence of hexane inside the cell.

Type:

transport

Pathway Components:

hexane_Ext - AcrA-TolC-AcrB -> hexane

Components:

Function	Name	Type
catalyzer	AcrA-TolC-AcrB	complex
product	hexane	simple_molecule
reactant	hexane_Ext	simple_molecule

Name:

enterobactin_Ext -> enterobactin

Description:

Transport of enterobactin_Ext through a bacterial membrane, leading to the presence of enterobactin inside the cell.

Type:

transport

Pathway Components:

enterobactin_Ext - AcrA-TolC-AcrB -> enterobactin

Components:

Function	Name	Type
catalyzer	AcrA-TolC-AcrB	complex
product	enterobactin	simple_molecule
reactant	enterobactin_Ext	simple_molecule

Name:

acrAB_mRNA -> AcrB

Description:

Translation of AcrB

Type:

translation

Pathway Components:

acrAB_mRNA -> AcrB

Components:

Function	Name	Type
product	AcrB	protein
reactant	acrAB_mRNA	RNA

Name:

gadEF_mRNA -> GadE

Description:

Translation of GadE

Type:

translation

Pathway Components:

gadEF_mRNA -> GadE

Components:

Function	Name	Type
product	GadE	protein
reactant	gadEF_mRNA	RNA

Name:

RcsB + GadE -> RcsB-GadE

Description:

Reaction transforming RcsB, GadE into RcsB-GadE

Type:

state transition

Pathway Components:

RcsB + GadE -> RcsB-GadE

Components:

Function	Name	Type
reactant	GadE	protein
reactant	RcsB	protein
product	RcsB-GadE	complex

Name:

gadEF_mRNA -> RNA:GadF

Description:

Translation of RNA:GadF

Type:

translation

Pathway Components:

gadEF_mRNA -> RNA:GadF

Components:

Function	Name	Type
product	RNA:GadF	protein
reactant	gadEF_mRNA	RNA

Name:

borD_mRNA -> BorD

Description:

Translation of BorD

Type:

translation

Pathway Components:

borD_mRNA -> BorD

Components:

Function	Name	Type
product	BorD	protein
reactant	borD_mRNA	RNA

Name:

malS_mRNA -> MalS

Description:

Translation of MalS

Type:

translation

Pathway Components:

malS_mRNA -> MalS

Components:

Function	Name	Type
product	MalS	protein
reactant	malS_mRNA	RNA

Name:

amylose -> maltohexaose + amylose

Description:

Reaction transforming amylose into maltohexaose, amylose

Type:

state transition

Pathway Components:

amylose - MalS -> maltohexaose + amylose

Components:

Function	Name	Type
catalyzer	MalS	protein
product	amylose	simple_molecule
reactant	amylose	simple_molecule
product	maltohexaose	simple_molecule

Name:

hdeD_mRNA -> HdeD

Description:

Translation of HdeD

Type:

translation

Pathway Components:

hdeD_mRNA -> HdeD

Components:

Function	Name	Type
product	HdeD	protein
reactant	hdeD_mRNA	RNA

Name:

ydeP_mRNA -> YdeP

Description:

Translation of YdeP

Type:

translation

Pathway Components:

ydeP_mRNA -> YdeP

Components:

Function	Name	Type
product	YdeP	protein
reactant	ydeP_mRNA	RNA

Name:

iraM_mRNA -> IraM

Description:

Translation of IraM

Type:

translation

Pathway Components:

iraM_mRNA -> IraM

Components:

Function	Name	Type
product	IraM	protein
reactant	iraM_mRNA	RNA

Name:

hdeAB-yhiD_mRNA -> HdeA

Description:

Translation of HdeA

Type:

translation

Pathway Components:

hdeAB-yhiD_mRNA -> HdeA

Components:

Function	Name	Type
product	HdeA	protein
reactant	hdeAB-yhiD_mRNA	RNA

Name:

hdeAB-yhiD_mRNA -> HdeB

Description:

Translation of HdeB

Type:

translation

Pathway Components:

hdeAB-yhiD_mRNA -> HdeB

Components:

Function	Name	Type
product	HdeB	protein
reactant	hdeAB-yhiD_mRNA	RNA

Name:

hdeAB-yhiD_mRNA -> YhiD

Description:

Translation of YhiD

Type:

translation

Pathway Components:

hdeAB-yhiD_mRNA -> YhiD

Components:

Function	Name	Type
product	YhiD	protein
reactant	hdeAB-yhiD_mRNA	RNA

Name:

purHD_mRNA -> PurH

Description:

Translation of PurH

Type:

translation

Pathway Components:

purHD_mRNA -> PurH

Components:

Function	Name	Type
product	PurH	protein
reactant	purHD_mRNA	RNA

Name:

10-formyl-THF mono-L-glutamate + AICAR -> THF polyglutamate + FAICAR

Description:

Reaction transforming 10-formyl-THF mono-L-glutamate, AICAR into THF polyglutamate, FAICAR

Type:

state transition

Pathway Components:

10-formyl-THF mono-L-glutamate + AICAR - PurH -> THF polyglutamate + FAICAR

Components:

Function	Name	Type
reactant	10-formyl-THF mono-L-glutamate	simple_molecule
reactant	AICAR	simple_molecule
product	FAICAR	simple_molecule
catalyzer	PurH	protein
product	THF polyglutamate	simple_molecule

Name:

5'-IMP -> FAICAR

Description:

Reaction transforming 5'-IMP into FAICAR

Type:

state transition

Pathway Components:

5'-IMP - PurH -> FAICAR

Components:

Function	Name	Type
reactant	5'-IMP	simple_molecule
product	FAICAR	simple_molecule
catalyzer	PurH	protein

Name:

purHD_mRNA -> PurD

Description:

Translation of PurD

Type:

translation

Pathway Components:

purHD_mRNA -> PurD

Components:

Function	Name	Type
product	PurD	protein
reactant	purHD_mRNA	RNA

Name:

5-phosphoribosylamine + glycine -> 5'-p-ribosylglycinamide + phosphate

Description:

Reaction transforming 5-phosphoribosylamine, glycine into 5'-p-ribosylglycinamide, phosphate

Type:

state transition

Pathway Components:

5-phosphoribosylamine + glycine - PurD - 5-phosphoribosylamine -> 5'-p-ribosylglycinamide + phosphate

Components:

Function	Name	Type
product	5'-p-ribosylglycinamide	simple_molecule
inhibitor	5-phosphoribosylamine	simple_molecule
reactant	5-phosphoribosylamine	simple_molecule
catalyzer	PurD	protein
reactant	glycine	simple_molecule
product	phosphate	simple_molecule

Name:

cysB_mRNA -> CysB

Description:

Translation of CysB

Type:

translation

Pathway Components:

cysB_mRNA -> CysB

Components:

Function	Name	Type
product	CysB	protein
reactant	cysB_mRNA	RNA

Name:

ybjG_mRNA -> YbjG

Description:

Translation of YbjG

Type:

translation

Pathway Components:

ybjG_mRNA -> YbjG

Components:

Function	Name	Type
product	YbjG	protein
reactant	ybjG_mRNA	RNA

Name:

UPP (ambiguous) -> ditrans,polycis-undecaprenyl phosphate + phosphate

Description:

Reaction transforming UPP (ambiguous) into ditrans,polycis-undecaprenyl phosphate, phosphate

Type:

state transition

Pathway Components:

UPP (ambiguous) - YbjG -> ditrans,polycis-undecaprenyl phosphate + phosphate

Components:

Function	Name	Type
reactant	UPP (ambiguous)	simple_molecule
catalyzer	YbjG	protein
product	ditrans,polycis-undecaprenyl phosphate	simple_molecule
product	phosphate	simple_molecule

Name:

nagA_mRNA -> NagA

Description:

Translation of NagA

Type:

translation

Pathway Components:

nagA_mRNA -> NagA

Components:

Function	Name	Type
product	NagA	protein
reactant	nagA_mRNA	RNA

Name:

N-acetyl-α-D-glucosamine 6-phosphate -> α-D-glucosamine phosphate + acetate

Description:

Reaction transforming N-acetyl-α-D-glucosamine 6-phosphate into α-D-glucosamine phosphate, acetate

Type:

state transition

Pathway Components:

N-acetyl-α-D-glucosamine 6-phosphate - NagA - acetate - α-D-glucosamine phosphate -> α-D-glucosamine phosphate + acetate

Components:

Function	Name	Type
inhibitor	α-D-glucosamine phosphate	simple_molecule
product	α-D-glucosamine phosphate	simple_molecule
reactant	N-acetyl-α-D-glucosamine 6-phosphate	simple_molecule
catalyzer	NagA	protein
inhibitor	acetate	simple_molecule
product	acetate	simple_molecule

Name:

treR_mRNA -> TreR

Description:

Translation of TreR

Type:

translation

Pathway Components:

treR_mRNA -> TreR

Components:

Function	Name	Type
product	TreR	protein
reactant	treR_mRNA	RNA

Name:

phoPQ_mRNA -> PhoP

Description:

Translation of PhoP

Type:

translation

Pathway Components:

phoPQ_mRNA -> PhoP

Components:

Function	Name	Type
product	PhoP	protein
reactant	phoPQ_mRNA	RNA

Name:

phoPQ_mRNA -> PhoQ

Description:

Translation of PhoQ

Type:

translation

Pathway Components:

phoPQ_mRNA -> PhoQ

Components:

Function	Name	Type
product	PhoQ	protein
reactant	phoPQ_mRNA	RNA

Name:

safA-ydeO_mRNA -> SafA

Description:

Translation of SafA

Type:

translation

Pathway Components:

safA-ydeO_mRNA -> SafA

Components:

Function	Name	Type
product	SafA	protein
reactant	safA-ydeO_mRNA	RNA

Name:

safA-ydeO_mRNA -> YdeO

Description:

Translation of YdeO

Type:

translation

Pathway Components:

safA-ydeO_mRNA -> YdeO

Components:

Function	Name	Type
product	YdeO	protein
reactant	safA-ydeO_mRNA	RNA

Name:

rstAB_mRNA -> RstA

Description:

Translation of RstA

Type:

translation

Pathway Components:

rstAB_mRNA -> RstA

Components:

Function	Name	Type
product	RstA	protein
reactant	rstAB_mRNA	RNA

Name:

rstAB_mRNA -> UrpT

Description:

Translation of UrpT

Type:

translation

Pathway Components:

rstAB_mRNA -> UrpT

Components:

Function	Name	Type
product	UrpT	protein
reactant	rstAB_mRNA	RNA

Name:

rstAB_mRNA -> RstB

Description:

Translation of RstB

Type:

translation

Pathway Components:

rstAB_mRNA -> RstB

Components:

Function	Name	Type
product	RstB	protein
reactant	rstAB_mRNA	RNA

Name:

rstAB_mRNA -> UspT

Description:

Translation of UspT

Type:

translation

Pathway Components:

rstAB_mRNA -> UspT

Components:

Function	Name	Type
product	UspT	protein
reactant	rstAB_mRNA	RNA

Name:

fadL_mRNA -> FadL

Description:

Translation of FadL

Type:

translation

Pathway Components:

fadL_mRNA -> FadL

Components:

Function	Name	Type
product	FadL	protein
reactant	fadL_mRNA	RNA

Name:

LCFA_Ext -> LCFA

Description:

Transport of LCFA_Ext through a bacterial membrane, leading to the presence of LCFA inside the cell.

Type:

transport

Pathway Components:

LCFA_Ext - FadL -> LCFA

Components:

Function	Name	Type
catalyzer	FadL	protein
product	LCFA	simple_molecule
reactant	LCFA_Ext	simple_molecule

Name:

slyB_mRNA -> SlyB

Description:

Translation of SlyB

Type:

translation

Pathway Components:

slyB_mRNA -> SlyB

Components:

Function	Name	Type
product	SlyB	protein
reactant	slyB_mRNA	RNA

Name:

mgtS_mRNA -> MgtS

Description:

Translation of MgtS

Type:

translation

Pathway Components:

mgtS_mRNA -> MgtS

Components:

Function	Name	Type
product	MgtS	protein
reactant	mgtS_mRNA	RNA

Name:

metBL_mRNA -> MetB

Description:

Translation of MetB

Type:

translation

Pathway Components:

metBL_mRNA -> MetB

Components:

Function	Name	Type
product	MetB	protein
reactant	metBL_mRNA	RNA

Name:

succinyl-homoserine + cysteine -> cystathionine + succinate

Description:

Reaction transforming succinyl-homoserine, cysteine into cystathionine, succinate

Type:

state transition

Pathway Components:

succinyl-homoserine + cysteine - MetB -> cystathionine + succinate

Components:

Function	Name	Type
catalyzer	MetB	protein
product	cystathionine	simple_molecule
reactant	cysteine	simple_molecule
product	succinate	simple_molecule
reactant	succinyl-homoserine	simple_molecule

Name:

succinyl-homoserine -> 2-oxobutyrate + succinate + ammonium

Description:

Reaction transforming succinyl-homoserine into 2-oxobutyrate, succinate , ammonium

Type:

state transition

Pathway Components:

succinyl-homoserine - MetB -> 2-oxobutyrate + succinate + ammonium

Components:

Function	Name	Type
product	2-oxobutyrate	simple_molecule
catalyzer	MetB	protein
product	ammonium	simple_molecule
product	succinate	simple_molecule
reactant	succinyl-homoserine	simple_molecule

Name:

succinyl-homoserine -> (2Z)-2-aminobut-2-enoate + succinate

Description:

Reaction transforming succinyl-homoserine into (2Z)-2-aminobut-2-enoate, succinate

Type:

state transition

Pathway Components:

succinyl-homoserine - MetB -> (2Z)-2-aminobut-2-enoate + succinate

Components:

Function	Name	Type
product	(2Z)-2-aminobut-2-enoate	simple_molecule
catalyzer	MetB	protein
product	succinate	simple_molecule
reactant	succinyl-homoserine	simple_molecule

Name:

metBL_mRNA -> MetL

Description:

Translation of MetL

Type:

translation

Pathway Components:

metBL_mRNA -> MetL

Components:

Function	Name	Type
product	MetL	protein
reactant	metBL_mRNA	RNA

Name:

aspartate -> aspartyl-4-P

Description:

Reaction transforming aspartate into aspartyl-4-P

Type:

state transition

Pathway Components:

aspartate - MetL - homo-ser -> aspartyl-4-P

Components:

Function	Name	Type
catalyzer	MetL	protein
reactant	aspartate	simple_molecule
product	aspartyl-4-P	simple_molecule
inhibitor	homo-ser	simple_molecule

Name:

aspartate-semialdehyde -> homo-ser

Description:

Reaction transforming aspartate-semialdehyde into homo-ser

Type:

state transition

Pathway Components:

aspartate-semialdehyde - MetL -> homo-ser

Components:

Function	Name	Type
catalyzer	MetL	protein
reactant	aspartate-semialdehyde	simple_molecule
product	homo-ser	simple_molecule

Name:

pagP_mRNA -> PagP

Description:

Translation of PagP

Type:

translation

Pathway Components:

pagP_mRNA -> PagP

Components:

Function	Name	Type
product	PagP	protein
reactant	pagP_mRNA	RNA

Name:

1-palmitoyl-2-acyl-phosphatidylcholine + synthetic E. coli lipid A -> 2-Lysolecithin + lipid B

Description:

Reaction transforming 1-palmitoyl-2-acyl-phosphatidylcholine, synthetic E. coli lipid A into 2-Lysolecithin, lipid B

Type:

state transition

Pathway Components:

1-palmitoyl-2-acyl-phosphatidylcholine + synthetic E. coli lipid A - PagP -> 2-Lysolecithin + lipid B

Components:

Function	Name	Type
reactant	1-palmitoyl-2-acyl-phosphatidylcholine	simple_molecule
product	2-Lysolecithin	simple_molecule
catalyzer	PagP	protein
product	lipid B	simple_molecule
reactant	synthetic E. coli lipid A	simple_molecule

Name:

yrbL_mRNA -> YrbL

Description:

Translation of YrbL

Type:

translation

Pathway Components:

yrbL_mRNA -> YrbL

Components:

Function	Name	Type
product	YrbL	protein
reactant	yrbL_mRNA	RNA

Name:

mgrR_mRNA -> RNA:MgrR

Description:

Translation of RNA:MgrR

Type:

translation

Pathway Components:

mgrR_mRNA -> RNA:MgrR

Components:

Function	Name	Type
product	RNA:MgrR	protein
reactant	mgrR_mRNA	RNA

Name:

hemL_mRNA -> HemL

Description:

Translation of HemL

Type:

translation

Pathway Components:

hemL_mRNA -> HemL

Components:

Function	Name	Type
product	HemL	protein
reactant	hemL_mRNA	RNA

Name:

glutamate 1-semialdehyde -> 5-aminolevulinate

Description:

Reaction transforming glutamate 1-semialdehyde into 5-aminolevulinate

Type:

state transition

Pathway Components:

glutamate 1-semialdehyde - HemL -> 5-aminolevulinate

Components:

Function	Name	Type
product	5-aminolevulinate	simple_molecule
catalyzer	HemL	protein
reactant	glutamate 1-semialdehyde	simple_molecule

Name:

argD_mRNA -> ArgD

Description:

Translation of ArgD

Type:

translation

Pathway Components:

argD_mRNA -> ArgD

Components:

Function	Name	Type
product	ArgD	protein
reactant	argD_mRNA	RNA

Name:

2-acetamido-5-oxopentanoate + L-glutamate -> acetylornithine + ketoglutarate

Description:

Reaction transforming 2-acetamido-5-oxopentanoate, L-glutamate into acetylornithine, ketoglutarate

Type:

state transition

Pathway Components:

2-acetamido-5-oxopentanoate + L-glutamate - ArgD -> acetylornithine + ketoglutarate

Components:

Function	Name	Type
reactant	2-acetamido-5-oxopentanoate	simple_molecule
catalyzer	ArgD	protein
reactant	L-glutamate	simple_molecule
product	acetylornithine	simple_molecule
product	ketoglutarate	simple_molecule

Name:

ketoglutarate + L,L-SDAP -> N-Succinyl-2-L-amino-6-oxoheptanedioate + L-glutamate

Description:

Reaction transforming ketoglutarate, L,L-SDAP into N-Succinyl-2-L-amino-6-oxoheptanedioate, L-glutamate

Type:

state transition

Pathway Components:

ketoglutarate + L,L-SDAP - ArgD - ketoglutarate -> N-Succinyl-2-L-amino-6-oxoheptanedioate + L-glutamate

Components:

Function	Name	Type
catalyzer	ArgD	protein
reactant	L,L-SDAP	simple_molecule
product	L-glutamate	simple_molecule
product	N-Succinyl-2-L-amino-6-oxoheptanedioate	simple_molecule
inhibitor	ketoglutarate	simple_molecule
reactant	ketoglutarate	simple_molecule

Name:

glgAP_mRNA -> GlgA

Description:

Translation of GlgA

Type:

translation

Pathway Components:

glgAP_mRNA -> GlgA

Components:

Function	Name	Type
product	GlgA	protein
reactant	glgAP_mRNA	RNA

Name:

ADP-glucose -> amylose

Description:

Reaction transforming ADP-glucose into amylose

Type:

state transition

Pathway Components:

ADP-glucose - GlgA -> amylose

Components:

Function	Name	Type
reactant	ADP-glucose	simple_molecule
catalyzer	GlgA	protein
product	amylose	simple_molecule

Name:

glgAP_mRNA -> GlgP

Description:

Translation of GlgP

Type:

translation

Pathway Components:

glgAP_mRNA -> GlgP

Components:

Function	Name	Type
product	GlgP	protein
reactant	glgAP_mRNA	RNA

Name:

phosphate + glycogen -> D-glucose 1-phosphate + α-limit dextrin

Description:

Reaction transforming phosphate, glycogen into D-glucose 1-phosphate, α-limit dextrin

Type:

state transition

Pathway Components:

phosphate + glycogen - GlgP - ADP-glucose -> D-glucose 1-phosphate + α-limit dextrin

Components:

Function	Name	Type
product	α-limit dextrin	simple_molecule
inhibitor	ADP-glucose	simple_molecule
product	D-glucose 1-phosphate	simple_molecule
catalyzer	GlgP	protein
reactant	glycogen	simple_molecule
reactant	phosphate	simple_molecule

Name:

tolC-ygiABC_mRNA -> TolC

Description:

Translation of TolC

Type:

translation

Pathway Components:

tolC-ygiABC_mRNA -> TolC

Components:

Function	Name	Type
product	TolC	protein
reactant	tolC-ygiABC_mRNA	RNA

Name:

MacA + TolC + MacB -> TolC-MacB-MacA

Description:

Reaction transforming MacA, TolC, MacB into TolC-MacB-MacA

Type:

state transition

Pathway Components:

MacA + TolC + MacB -> TolC-MacB-MacA

Components:

Function	Name	Type
reactant	MacA	protein
reactant	MacB	protein
reactant	TolC	protein
product	TolC-MacB-MacA	complex

Name:

macrolide antibiotic_Ext -> macrolide antibiotic

Description:

Transport of macrolide antibiotic_Ext through a bacterial membrane, leading to the presence of macrolide antibiotic inside the cell.

Type:

transport

Pathway Components:

macrolide antibiotic_Ext - TolC-MacB-MacA -> macrolide antibiotic

Components:

Function	Name	Type
catalyzer	TolC-MacB-MacA	complex
product	macrolide antibiotic	simple_molecule
reactant	macrolide antibiotic_Ext	simple_molecule

Name:

TolC + MdtA + MdtB + MdtC -> TolC-MdtC-MdtB-MdtA

Description:

Reaction transforming TolC, MdtA, MdtB, MdtC into TolC-MdtC-MdtB-MdtA

Type:

state transition

Pathway Components:

TolC + MdtA + MdtB + MdtC -> TolC-MdtC-MdtB-MdtA

Components:

Function	Name	Type
reactant	MdtA	protein
reactant	MdtB	protein
reactant	MdtC	protein
reactant	TolC	protein
product	TolC-MdtC-MdtB-MdtA	complex

Name:

novobiocin_Ext -> novobiocin

Description:

Transport of novobiocin_Ext through a bacterial membrane, leading to the presence of novobiocin inside the cell.

Type:

transport

Pathway Components:

novobiocin_Ext - TolC-MdtC-MdtB-MdtA -> novobiocin

Components:

Function	Name	Type
catalyzer	TolC-MdtC-MdtB-MdtA	complex
product	novobiocin	simple_molecule
reactant	novobiocin_Ext	simple_molecule

Name:

deoxycholate_Ext -> deoxycholate

Description:

Transport of deoxycholate_Ext through a bacterial membrane, leading to the presence of deoxycholate inside the cell.

Type:

transport

Pathway Components:

deoxycholate_Ext - TolC-MdtC-MdtB-MdtA -> deoxycholate

Components:

Function	Name	Type
catalyzer	TolC-MdtC-MdtB-MdtA	complex
product	deoxycholate	simple_molecule
reactant	deoxycholate_Ext	simple_molecule

Name:

EmrK + TolC + EmrY -> EmrK-EmrY-TolC

Description:

Reaction transforming EmrK, TolC, EmrY into EmrK-EmrY-TolC

Type:

state transition

Pathway Components:

EmrK + TolC + EmrY -> EmrK-EmrY-TolC

Components:

Function	Name	Type
reactant	EmrK	protein
product	EmrK-EmrY-TolC	complex
reactant	EmrY	protein
reactant	TolC	protein

Name:

EmrB + TolC + EmrA -> EmrA-EmrB-TolC

Description:

Reaction transforming EmrB, TolC, EmrA into EmrA-EmrB-TolC

Type:

state transition

Pathway Components:

EmrB + TolC + EmrA -> EmrA-EmrB-TolC

Components:

Function	Name	Type
reactant	EmrA	protein
product	EmrA-EmrB-TolC	complex
reactant	EmrB	protein
reactant	TolC	protein

Name:

TolC + AcrE + AcrF -> AcrE-AcrF-TolC

Description:

Reaction transforming TolC, AcrE, AcrF into AcrE-AcrF-TolC

Type:

state transition

Pathway Components:

TolC + AcrE + AcrF -> AcrE-AcrF-TolC

Components:

Function	Name	Type
reactant	AcrE	protein
product	AcrE-AcrF-TolC	complex
reactant	AcrF	protein
reactant	TolC	protein

Name:

MdtE + TolC + MdtF -> TolC-MdtE-MdtF

Description:

Reaction transforming MdtE, TolC, MdtF into TolC-MdtE-MdtF

Type:

state transition

Pathway Components:

MdtE + TolC + MdtF -> TolC-MdtE-MdtF

Components:

Function	Name	Type
reactant	MdtE	protein
reactant	MdtF	protein
reactant	TolC	protein
product	TolC-MdtE-MdtF	complex

Name:

tolC-ygiABC_mRNA -> YgiA

Description:

Translation of YgiA

Type:

translation

Pathway Components:

tolC-ygiABC_mRNA -> YgiA

Components:

Function	Name	Type
product	YgiA	protein
reactant	tolC-ygiABC_mRNA	RNA

Name:

tolC-ygiABC_mRNA -> YgiB

Description:

Translation of YgiB

Type:

translation

Pathway Components:

tolC-ygiABC_mRNA -> YgiB

Components:

Function	Name	Type
product	YgiB	protein
reactant	tolC-ygiABC_mRNA	RNA

Name:

tolC-ygiABC_mRNA -> YgiC

Description:

Translation of YgiC

Type:

translation

Pathway Components:

tolC-ygiABC_mRNA -> YgiC

Components:

Function	Name	Type
product	YgiC	protein
reactant	tolC-ygiABC_mRNA	RNA

Name:

glgBXCAP_mRNA -> GlgB

Description:

Translation of GlgB

Type:

translation

Pathway Components:

glgBXCAP_mRNA -> GlgB

Components:

Function	Name	Type
product	GlgB	protein
reactant	glgBXCAP_mRNA	RNA

Name:

amylose -> glycogen

Description:

Reaction transforming amylose into glycogen

Type:

state transition

Pathway Components:

amylose - GlgB -> glycogen

Components:

Function	Name	Type
catalyzer	GlgB	protein
reactant	amylose	simple_molecule
product	glycogen	simple_molecule

Name:

glgBXCAP_mRNA -> GlgX

Description:

Translation of GlgX

Type:

translation

Pathway Components:

glgBXCAP_mRNA -> GlgX

Components:

Function	Name	Type
product	GlgX	protein
reactant	glgBXCAP_mRNA	RNA

Name:

α-limit dextrin -> debranched α-limit dextrin + maltotetraose

Description:

Reaction transforming α-limit dextrin into debranched α-limit dextrin, maltotetraose

Type:

state transition

Pathway Components:

α-limit dextrin - GlgX -> debranched α-limit dextrin + maltotetraose

Components:

Function	Name	Type
reactant	α-limit dextrin	simple_molecule
catalyzer	GlgX	protein
product	debranched α-limit dextrin	simple_molecule
product	maltotetraose	simple_molecule

Name:

glgBXCAP_mRNA -> GlgC

Description:

Translation of GlgC

Type:

translation

Pathway Components:

glgBXCAP_mRNA -> GlgC

Components:

Function	Name	Type
product	GlgC	protein
reactant	glgBXCAP_mRNA	RNA

Name:

D-glucose 1-phosphate -> diphosphate + ADP-glucose

Description:

Reaction transforming D-glucose 1-phosphate into diphosphate, ADP-glucose

Type:

state transition

Pathway Components:

D-glucose 1-phosphate - GlgC -> diphosphate + ADP-glucose

Components:

Function	Name	Type
product	ADP-glucose	simple_molecule
reactant	D-glucose 1-phosphate	simple_molecule
catalyzer	GlgC	protein
product	diphosphate	simple_molecule

Name:

glgBXCAP_mRNA -> GlgA

Description:

Translation of GlgA

Type:

translation

Pathway Components:

glgBXCAP_mRNA -> GlgA

Components:

Function	Name	Type
product	GlgA	protein
reactant	glgBXCAP_mRNA	RNA

Name:

glgBXCAP_mRNA -> GlgP

Description:

Translation of GlgP

Type:

translation

Pathway Components:

glgBXCAP_mRNA -> GlgP

Components:

Function	Name	Type
product	GlgP	protein
reactant	glgBXCAP_mRNA	RNA

Name:

gadW_mRNA -> GadW

Description:

Translation of GadW

Type:

translation

Pathway Components:

gadW_mRNA -> GadW

Components:

Function	Name	Type
product	GadW	protein
reactant	gadW_mRNA	RNA

Name:

5'-p-ribosylglycinamide -> AICAR

Description:

Transformation of 5'-p-ribosylglycinamide into AICAR by one or more reactions not shown.

Type:

complementary pathway reaction

Pathway Components:

5'-p-ribosylglycinamide / GARTRANSFORMYL2-RXN / FGAMSYN-RXN / AIRS-RXN / RXN0-742 / RXN0-743 / SAICARSYN-RXN / AICARSYN-RXN / AICAR

Components:

Function	Name	Type
reactant	5'-p-ribosylglycinamide	simple_molecule
product	AICAR	simple_molecule

Name:

homo-ser -> succinyl-homoserine

Description:

Transformation of homo-ser into succinyl-homoserine by one or more reactions not shown.

Type:

complementary pathway reaction

Pathway Components:

homo-ser / HOMSUCTRAN-RXN / succinyl-homoserine

Components:

Function	Name	Type
reactant	homo-ser	simple_molecule
product	succinyl-homoserine	simple_molecule

Name:

aspartyl-4-P -> N-Succinyl-2-L-amino-6-oxoheptanedioate

Description:

Transformation of aspartyl-4-P into N-Succinyl-2-L-amino-6-oxoheptanedioate by one or more reactions not shown.

Type:

complementary pathway reaction

Pathway Components:

aspartyl-4-P / ASPARTATE-SEMIALDEHYDE-DEHYDROGENASE-RXN / DIHYDRODIPICSYN-RXN / RXN-14014 / TETHYDPICSUCC-RXN / N-Succinyl-2-L-amino-6-oxoheptanedioate

Components:

Function	Name	Type
product	N-Succinyl-2-L-amino-6-oxoheptanedioate	simple_molecule
reactant	aspartyl-4-P	simple_molecule

Name:

aspartyl-4-P -> aspartate-semialdehyde

Description:

Transformation of aspartyl-4-P into aspartate-semialdehyde by one or more reactions not shown.

Type:

complementary pathway reaction

Pathway Components:

aspartyl-4-P / ASPARTATE-SEMIALDEHYDE-DEHYDROGENASE-RXN / aspartate-semialdehyde

Components:

Function	Name	Type
product	aspartate-semialdehyde	simple_molecule
reactant	aspartyl-4-P	simple_molecule

Gensor Unit Map