RegulonDB

Name:

csgDEFG -> csgDEFG_mRNA

Description:

Transcription of transcription unit csgDEFG. Reaction activation by OmpR-phosphate.

Type:

transcription

Pathway Components:

csgDEFG - OmpR-phosphate -> csgDEFG_mRNA

Components:

Function	Name	Type
activator	OmpR-phosphate	complex
reactant	csgDEFG	gene
product	csgDEFG_mRNA	RNA

Name:

dtpA -> dtpA_mRNA

Description:

Transcription of transcription unit dtpA. Reaction activation by OmpR-phosphate.

Type:

transcription

Pathway Components:

dtpA - OmpR-phosphate -> dtpA_mRNA

Components:

Function	Name	Type
activator	OmpR-phosphate	complex
reactant	dtpA	gene
product	dtpA_mRNA	RNA

Name:

micF -> micF_mRNA

Description:

Transcription of transcription unit micF. Reaction activation by OmpR-phosphate.

Type:

transcription

Pathway Components:

micF - OmpR-phosphate -> micF_mRNA

Components:

Function	Name	Type
activator	OmpR-phosphate	complex
reactant	micF	gene
product	micF_mRNA	RNA

Name:

ompC -> ompC_mRNA

Description:

Transcription of transcription unit ompC. Reaction activation by OmpR-phosphate.

Type:

transcription

Pathway Components:

ompC - OmpR-phosphate -> ompC_mRNA

Components:

Function	Name	Type
activator	OmpR-phosphate	complex
reactant	ompC	gene
product	ompC_mRNA	RNA

Name:

ompF -> ompF_mRNA

Description:

Transcription of transcription unit ompF. Reaction activation by OmpR-phosphate. Reaction inhibition by OmpR-phosphate.

Type:

transcription

Pathway Components:

ompF - OmpR-phosphate - OmpR-phosphate -> ompF_mRNA

Components:

Function	Name	Type
activator	OmpR-phosphate	complex
inhibitor	OmpR-phosphate	complex
reactant	ompF	gene
product	ompF_mRNA	RNA

Name:

omrA -> omrA_mRNA

Description:

Transcription of transcription unit omrA. Reaction activation by OmpR-phosphate.

Type:

transcription

Pathway Components:

omrA - OmpR-phosphate -> omrA_mRNA

Components:

Function	Name	Type
activator	OmpR-phosphate	complex
reactant	omrA	gene
product	omrA_mRNA	RNA

Name:

omrB -> omrB_mRNA

Description:

Transcription of transcription unit omrB. Reaction activation by OmpR-phosphate.

Type:

transcription

Pathway Components:

omrB - OmpR-phosphate -> omrB_mRNA

Components:

Function	Name	Type
activator	OmpR-phosphate	complex
reactant	omrB	gene
product	omrB_mRNA	RNA

Name:

bolA -> bolA_mRNA

Description:

Transcription of transcription unit bolA. Reaction inhibition by OmpR-phosphate.

Type:

transcription

Pathway Components:

bolA - OmpR-phosphate -> bolA_mRNA

Components:

Function	Name	Type
inhibitor	OmpR-phosphate	complex
reactant	bolA	gene
product	bolA_mRNA	RNA

Name:

ecnB -> ecnB_mRNA

Description:

Transcription of transcription unit ecnB. Reaction inhibition by OmpR-phosphate.

Type:

transcription

Pathway Components:

ecnB - OmpR-phosphate -> ecnB_mRNA

Components:

Function	Name	Type
inhibitor	OmpR-phosphate	complex
reactant	ecnB	gene
product	ecnB_mRNA	RNA

Name:

fadL -> fadL_mRNA

Description:

Transcription of transcription unit fadL. Reaction inhibition by OmpR-phosphate.

Type:

transcription

Pathway Components:

fadL - OmpR-phosphate -> fadL_mRNA

Components:

Function	Name	Type
inhibitor	OmpR-phosphate	complex
reactant	fadL	gene
product	fadL_mRNA	RNA

Name:

flhDC -> flhDC_mRNA

Description:

Transcription of transcription unit flhDC. Reaction inhibition by OmpR-phosphate.

Type:

transcription

Pathway Components:

flhDC - OmpR-phosphate -> flhDC_mRNA

Components:

Function	Name	Type
inhibitor	OmpR-phosphate	complex
reactant	flhDC	gene
product	flhDC_mRNA	RNA

Name:

nmpC -> nmpC_mRNA

Description:

Transcription of transcription unit nmpC. Reaction inhibition by OmpR-phosphate.

Type:

transcription

Pathway Components:

nmpC - OmpR-phosphate -> nmpC_mRNA

Components:

Function	Name	Type
inhibitor	OmpR-phosphate	complex
reactant	nmpC	gene
product	nmpC_mRNA	RNA

Name:

pgaABCD -> pgaABCD_mRNA

Description:

Transcription of transcription unit pgaABCD. Reaction inhibition by OmpR-phosphate.

Type:

transcription

Pathway Components:

pgaABCD - OmpR-phosphate -> pgaABCD_mRNA

Components:

Function	Name	Type
inhibitor	OmpR-phosphate	complex
reactant	pgaABCD	gene
product	pgaABCD_mRNA	RNA

Name:

sra -> sra_mRNA

Description:

Transcription of transcription unit sra. Reaction inhibition by OmpR-phosphate.

Type:

transcription

Pathway Components:

sra - OmpR-phosphate -> sra_mRNA

Components:

Function	Name	Type
inhibitor	OmpR-phosphate	complex
reactant	sra	gene
product	sra_mRNA	RNA

Name:

bolA_mRNA -> BolA

Description:

Translation of BolA

Type:

translation

Pathway Components:

bolA_mRNA -> BolA

Components:

Function	Name	Type
product	BolA	protein
reactant	bolA_mRNA	RNA

Name:

BolA + GrxD -> BolA-GrxD

Description:

Reaction transforming BolA, GrxD into BolA-GrxD

Type:

state transition

Pathway Components:

BolA + GrxD -> BolA-GrxD

Components:

Function	Name	Type
reactant	BolA	protein
product	BolA-GrxD	complex
reactant	GrxD	protein

Name:

sra_mRNA -> Sra

Description:

Translation of Sra

Type:

translation

Pathway Components:

sra_mRNA -> Sra

Components:

Function	Name	Type
product	Sra	protein
reactant	sra_mRNA	RNA

Name:

RpsJ + RpsC + RpsB + RpsK + RpsD + RpsS + RpsG + RpsM + RpsL + RpsF + RpsR + RpsE + RpsO + RpsI + RpsN + RpsU + RpsH + RpsA + RpsP + RpsQ + RpsT + Sra -> RpsA-RpsB-RpsC-RpsD-RpsE-RpsF-RpsG-RpsH-RpsI-RpsJ-RpsK-RpsL-RpsM-RpsN-RpsO-RpsP-RpsQ-RpsR-RpsS-RpsT-RpsU-Sra

Description:

Reaction transforming RpsJ, RpsC, RpsB, RpsK, RpsD, RpsS, RpsG, RpsM, RpsL, RpsF, RpsR, RpsE, RpsO, RpsI, RpsN, RpsU, RpsH, RpsA, RpsP, RpsQ, RpsT, Sra into RpsA-RpsB-RpsC-RpsD-RpsE-RpsF-RpsG-RpsH-RpsI-RpsJ-RpsK-RpsL-RpsM-RpsN-RpsO-RpsP-RpsQ-RpsR-RpsS-RpsT-RpsU-Sra

Type:

state transition

Pathway Components:

RpsJ + RpsC + RpsB + RpsK + RpsD + RpsS + RpsG + RpsM + RpsL + RpsF + RpsR + RpsE + RpsO + RpsI + RpsN + RpsU + RpsH + RpsA + RpsP + RpsQ + RpsT + Sra -> RpsA-RpsB-RpsC-RpsD-RpsE-RpsF-RpsG-RpsH-RpsI-RpsJ-RpsK-RpsL-RpsM-RpsN-RpsO-RpsP-RpsQ-RpsR-RpsS-RpsT-RpsU-Sra

Components:

Show/Hide Components Table

Function	Name	Type
reactant	RpsA	protein
product	RpsA-RpsB-RpsC-RpsD-RpsE-RpsF-RpsG-RpsH-RpsI-RpsJ-RpsK-RpsL-RpsM-RpsN-RpsO-RpsP-RpsQ-RpsR-RpsS-RpsT-RpsU-Sra	complex
reactant	RpsB	protein
reactant	RpsC	protein
reactant	RpsD	protein
reactant	RpsE	protein
reactant	RpsF	protein
reactant	RpsG	protein
reactant	RpsH	protein
reactant	RpsI	protein
reactant	RpsJ	protein
reactant	RpsK	protein
reactant	RpsL	protein
reactant	RpsM	protein
reactant	RpsN	protein
reactant	RpsO	protein
reactant	RpsP	protein
reactant	RpsQ	protein
reactant	RpsR	protein
reactant	RpsS	protein
reactant	RpsT	protein
reactant	RpsU	protein
reactant	Sra	protein

Name:

ompC_mRNA -> OmpC

Description:

Translation of OmpC

Type:

translation

Pathway Components:

ompC_mRNA -> OmpC

Components:

Function	Name	Type
product	OmpC	protein
reactant	ompC_mRNA	RNA

Name:

hydrophilic solute or ion 600 Da_Ext -> hydrophilic solute or ion 600 Da

Description:

Transport of hydrophilic solute or ion 600 Da_Ext through a bacterial membrane, leading to the presence of hydrophilic solute or ion 600 Da inside the cell.

Type:

transport

Pathway Components:

hydrophilic solute or ion 600 Da_Ext - OmpC - OmpF -> hydrophilic solute or ion 600 Da

Components:

Function	Name	Type
catalyzer	OmpC	protein
catalyzer	OmpF	protein
product	hydrophilic solute or ion 600 Da	simple_molecule
reactant	hydrophilic solute or ion 600 Da_Ext	simple_molecule

Name:

organophosphorus compound_Ext -> organophosphorus compound

Description:

Transport of organophosphorus compound_Ext through a bacterial membrane, leading to the presence of organophosphorus compound inside the cell.

Type:

transport

Pathway Components:

organophosphorus compound_Ext - OmpC - OmpF -> organophosphorus compound

Components:

Function	Name	Type
catalyzer	OmpC	protein
catalyzer	OmpF	protein
product	organophosphorus compound	simple_molecule
reactant	organophosphorus compound_Ext	simple_molecule

Name:

MCFA_Ext -> MCFA

Description:

Transport of MCFA_Ext through a bacterial membrane, leading to the presence of MCFA inside the cell.

Type:

transport

Pathway Components:

MCFA_Ext - OmpC - OmpF -> MCFA

Components:

Function	Name	Type
product	MCFA	simple_molecule
reactant	MCFA_Ext	simple_molecule
catalyzer	OmpC	protein
catalyzer	OmpF	protein

Name:

caprate_Ext -> caprate

Description:

Transport of caprate_Ext through a bacterial membrane, leading to the presence of caprate inside the cell.

Type:

transport

Pathway Components:

caprate_Ext - OmpC - OmpF -> caprate

Components:

Function	Name	Type
catalyzer	OmpC	protein
catalyzer	OmpF	protein
product	caprate	simple_molecule
reactant	caprate_Ext	simple_molecule

Name:

glycoside_Ext -> glycoside

Description:

Transport of glycoside_Ext through a bacterial membrane, leading to the presence of glycoside inside the cell.

Type:

transport

Pathway Components:

glycoside_Ext - OmpC - OmpF -> glycoside

Components:

Function	Name	Type
catalyzer	OmpC	protein
catalyzer	OmpF	protein
product	glycoside	simple_molecule
reactant	glycoside_Ext	simple_molecule

Name:

sugar_Ext -> sugar

Description:

Transport of sugar_Ext through a bacterial membrane, leading to the presence of sugar inside the cell.

Type:

transport

Pathway Components:

sugar_Ext - OmpC - OmpF -> sugar

Components:

Function	Name	Type
catalyzer	OmpC	protein
catalyzer	OmpF	protein
product	sugar	simple_molecule
reactant	sugar_Ext	simple_molecule

Name:

beta-Neu5Ac_Ext -> beta-Neu5Ac

Description:

Transport of beta-Neu5Ac_Ext through a bacterial membrane, leading to the presence of beta-Neu5Ac inside the cell.

Type:

transport

Pathway Components:

beta-Neu5Ac_Ext - OmpC - OmpF -> beta-Neu5Ac

Components:

Function	Name	Type
catalyzer	OmpC	protein
catalyzer	OmpF	protein
product	beta-Neu5Ac	simple_molecule
reactant	beta-Neu5Ac_Ext	simple_molecule

Name:

N-acetylneuraminate_Ext -> N-acetylneuraminate

Description:

Transport of N-acetylneuraminate_Ext through a bacterial membrane, leading to the presence of N-acetylneuraminate inside the cell.

Type:

transport

Pathway Components:

N-acetylneuraminate_Ext - OmpC - OmpF -> N-acetylneuraminate

Components:

Function	Name	Type
product	N-acetylneuraminate	simple_molecule
reactant	N-acetylneuraminate_Ext	simple_molecule
catalyzer	OmpC	protein
catalyzer	OmpF	protein

Name:

sugar phosphate_Ext -> sugar phosphate

Description:

Transport of sugar phosphate_Ext through a bacterial membrane, leading to the presence of sugar phosphate inside the cell.

Type:

transport

Pathway Components:

sugar phosphate_Ext - OmpC - OmpF -> sugar phosphate

Components:

Function	Name	Type
catalyzer	OmpC	protein
catalyzer	OmpF	protein
product	sugar phosphate	simple_molecule
reactant	sugar phosphate_Ext	simple_molecule

Name:

monocarboxylate_Ext -> monocarboxylate

Description:

Transport of monocarboxylate_Ext through a bacterial membrane, leading to the presence of monocarboxylate inside the cell.

Type:

transport

Pathway Components:

monocarboxylate_Ext - OmpC - OmpF -> monocarboxylate

Components:

Function	Name	Type
catalyzer	OmpC	protein
catalyzer	OmpF	protein
product	monocarboxylate	simple_molecule
reactant	monocarboxylate_Ext	simple_molecule

Name:

aromatic compound_Ext -> aromatic compound

Description:

Transport of aromatic compound_Ext through a bacterial membrane, leading to the presence of aromatic compound inside the cell.

Type:

transport

Pathway Components:

aromatic compound_Ext - OmpC - OmpF -> aromatic compound

Components:

Function	Name	Type
catalyzer	OmpC	protein
catalyzer	OmpF	protein
product	aromatic compound	simple_molecule
reactant	aromatic compound_Ext	simple_molecule

Name:

enterobactin_Ext -> enterobactin

Description:

Transport of enterobactin_Ext through a bacterial membrane, leading to the presence of enterobactin inside the cell.

Type:

transport

Pathway Components:

enterobactin_Ext - OmpC - OmpF -> enterobactin

Components:

Function	Name	Type
catalyzer	OmpC	protein
catalyzer	OmpF	protein
product	enterobactin	simple_molecule
reactant	enterobactin_Ext	simple_molecule

Name:

trisaccharide_Ext -> trisaccharide

Description:

Transport of trisaccharide_Ext through a bacterial membrane, leading to the presence of trisaccharide inside the cell.

Type:

transport

Pathway Components:

trisaccharide_Ext - OmpC - OmpF -> trisaccharide

Components:

Function	Name	Type
catalyzer	OmpC	protein
catalyzer	OmpF	protein
product	trisaccharide	simple_molecule
reactant	trisaccharide_Ext	simple_molecule

Name:

disaccharide_Ext -> disaccharide

Description:

Transport of disaccharide_Ext through a bacterial membrane, leading to the presence of disaccharide inside the cell.

Type:

transport

Pathway Components:

disaccharide_Ext - OmpC - OmpF -> disaccharide

Components:

Function	Name	Type
catalyzer	OmpC	protein
catalyzer	OmpF	protein
product	disaccharide	simple_molecule
reactant	disaccharide_Ext	simple_molecule

Name:

maltose_Ext -> maltose

Description:

Transport of maltose_Ext through a bacterial membrane, leading to the presence of maltose inside the cell.

Type:

transport

Pathway Components:

maltose_Ext - OmpC - OmpF -> maltose

Components:

Function	Name	Type
catalyzer	OmpC	protein
catalyzer	OmpF	protein
product	maltose	simple_molecule
reactant	maltose_Ext	simple_molecule

Name:

chitobiose_Ext -> chitobiose

Description:

Transport of chitobiose_Ext through a bacterial membrane, leading to the presence of chitobiose inside the cell.

Type:

transport

Pathway Components:

chitobiose_Ext - OmpC - OmpF -> chitobiose

Components:

Function	Name	Type
catalyzer	OmpC	protein
catalyzer	OmpF	protein
product	chitobiose	simple_molecule
reactant	chitobiose_Ext	simple_molecule

Name:

oligopeptide_Ext -> oligopeptide

Description:

Transport of oligopeptide_Ext through a bacterial membrane, leading to the presence of oligopeptide inside the cell.

Type:

transport

Pathway Components:

oligopeptide_Ext - OmpC - OmpF -> oligopeptide

Components:

Function	Name	Type
catalyzer	OmpC	protein
catalyzer	OmpF	protein
product	oligopeptide	simple_molecule
reactant	oligopeptide_Ext	simple_molecule

Name:

nucleotide_Ext -> nucleotide

Description:

Transport of nucleotide_Ext through a bacterial membrane, leading to the presence of nucleotide inside the cell.

Type:

transport

Pathway Components:

nucleotide_Ext - OmpC - OmpF -> nucleotide

Components:

Function	Name	Type
catalyzer	OmpC	protein
catalyzer	OmpF	protein
product	nucleotide	simple_molecule
reactant	nucleotide_Ext	simple_molecule

Name:

nucleotide sugar_Ext -> nucleotide sugar

Description:

Transport of nucleotide sugar_Ext through a bacterial membrane, leading to the presence of nucleotide sugar inside the cell.

Type:

transport

Pathway Components:

nucleotide sugar_Ext - OmpC - OmpF -> nucleotide sugar

Components:

Function	Name	Type
catalyzer	OmpC	protein
catalyzer	OmpF	protein
product	nucleotide sugar	simple_molecule
reactant	nucleotide sugar_Ext	simple_molecule

Name:

nucleoside_Ext -> nucleoside

Description:

Transport of nucleoside_Ext through a bacterial membrane, leading to the presence of nucleoside inside the cell.

Type:

transport

Pathway Components:

nucleoside_Ext - OmpC - OmpF -> nucleoside

Components:

Function	Name	Type
catalyzer	OmpC	protein
catalyzer	OmpF	protein
product	nucleoside	simple_molecule
reactant	nucleoside_Ext	simple_molecule

Name:

RCHO_Ext -> RCHO

Description:

Transport of RCHO_Ext through a bacterial membrane, leading to the presence of RCHO inside the cell.

Type:

transport

Pathway Components:

RCHO_Ext - OmpC - OmpF -> RCHO

Components:

Function	Name	Type
catalyzer	OmpC	protein
catalyzer	OmpF	protein
product	RCHO	simple_molecule
reactant	RCHO_Ext	simple_molecule

Name:

lactone_Ext -> lactone

Description:

Transport of lactone_Ext through a bacterial membrane, leading to the presence of lactone inside the cell.

Type:

transport

Pathway Components:

lactone_Ext - OmpC - OmpF -> lactone

Components:

Function	Name	Type
catalyzer	OmpC	protein
catalyzer	OmpF	protein
product	lactone	simple_molecule
reactant	lactone_Ext	simple_molecule

Name:

amide_Ext -> amide

Description:

Transport of amide_Ext through a bacterial membrane, leading to the presence of amide inside the cell.

Type:

transport

Pathway Components:

amide_Ext - OmpC - OmpF -> amide

Components:

Function	Name	Type
catalyzer	OmpC	protein
catalyzer	OmpF	protein
product	amide	simple_molecule
reactant	amide_Ext	simple_molecule

Name:

amine_Ext -> amine

Description:

Transport of amine_Ext through a bacterial membrane, leading to the presence of amine inside the cell.

Type:

transport

Pathway Components:

amine_Ext - OmpC - OmpF -> amine

Components:

Function	Name	Type
catalyzer	OmpC	protein
catalyzer	OmpF	protein
product	amine	simple_molecule
reactant	amine_Ext	simple_molecule

Name:

hydroxy carboxylate_Ext -> hydroxy carboxylate

Description:

Transport of hydroxy carboxylate_Ext through a bacterial membrane, leading to the presence of hydroxy carboxylate inside the cell.

Type:

transport

Pathway Components:

hydroxy carboxylate_Ext - OmpC - OmpF -> hydroxy carboxylate

Components:

Function	Name	Type
catalyzer	OmpC	protein
catalyzer	OmpF	protein
product	hydroxy carboxylate	simple_molecule
reactant	hydroxy carboxylate_Ext	simple_molecule

Name:

aldonate_Ext -> aldonate

Description:

Transport of aldonate_Ext through a bacterial membrane, leading to the presence of aldonate inside the cell.

Type:

transport

Pathway Components:

aldonate_Ext - OmpC - OmpF -> aldonate

Components:

Function	Name	Type
catalyzer	OmpC	protein
catalyzer	OmpF	protein
product	aldonate	simple_molecule
reactant	aldonate_Ext	simple_molecule

Name:

betaine_Ext -> betaine

Description:

Transport of betaine_Ext through a bacterial membrane, leading to the presence of betaine inside the cell.

Type:

transport

Pathway Components:

betaine_Ext - OmpC - OmpF -> betaine

Components:

Function	Name	Type
catalyzer	OmpC	protein
catalyzer	OmpF	protein
product	betaine	simple_molecule
reactant	betaine_Ext	simple_molecule

Name:

5-methylthioribose_Ext -> 5-methylthioribose

Description:

Transport of 5-methylthioribose_Ext through a bacterial membrane, leading to the presence of 5-methylthioribose inside the cell.

Type:

transport

Pathway Components:

5-methylthioribose_Ext - OmpC - OmpF -> 5-methylthioribose

Components:

Function	Name	Type
product	5-methylthioribose	simple_molecule
reactant	5-methylthioribose_Ext	simple_molecule
catalyzer	OmpC	protein
catalyzer	OmpF	protein

Name:

inositol_Ext -> inositol

Description:

Transport of inositol_Ext through a bacterial membrane, leading to the presence of inositol inside the cell.

Type:

transport

Pathway Components:

inositol_Ext - OmpC - OmpF -> inositol

Components:

Function	Name	Type
catalyzer	OmpC	protein
catalyzer	OmpF	protein
product	inositol	simple_molecule
reactant	inositol_Ext	simple_molecule

Name:

amino acid_Ext -> amino acid

Description:

Transport of amino acid_Ext through a bacterial membrane, leading to the presence of amino acid inside the cell.

Type:

transport

Pathway Components:

amino acid_Ext - OmpC - OmpF -> amino acid

Components:

Function	Name	Type
catalyzer	OmpC	protein
catalyzer	OmpF	protein
product	amino acid	simple_molecule
reactant	amino acid_Ext	simple_molecule

Name:

base(2)_Ext -> base(2)

Description:

Transport of base(2)_Ext through a bacterial membrane, leading to the presence of base(2) inside the cell.

Type:

transport

Pathway Components:

base(2)_Ext - OmpC - OmpF -> base(2)

Components:

Function	Name	Type
catalyzer	OmpC	protein
catalyzer	OmpF	protein
product	base(2)	simple_molecule
reactant	base(2)_Ext	simple_molecule

Name:

dicarboxylate_Ext -> dicarboxylate

Description:

Transport of dicarboxylate_Ext through a bacterial membrane, leading to the presence of dicarboxylate inside the cell.

Type:

transport

Pathway Components:

dicarboxylate_Ext - OmpC - OmpF -> dicarboxylate

Components:

Function	Name	Type
catalyzer	OmpC	protein
catalyzer	OmpF	protein
product	dicarboxylate	simple_molecule
reactant	dicarboxylate_Ext	simple_molecule

Name:

polyol_Ext -> polyol

Description:

Transport of polyol_Ext through a bacterial membrane, leading to the presence of polyol inside the cell.

Type:

transport

Pathway Components:

polyol_Ext - OmpC - OmpF -> polyol

Components:

Function	Name	Type
catalyzer	OmpC	protein
catalyzer	OmpF	protein
product	polyol	simple_molecule
reactant	polyol_Ext	simple_molecule

Name:

short-chain alcohol_Ext -> short-chain alcohol

Description:

Transport of short-chain alcohol_Ext through a bacterial membrane, leading to the presence of short-chain alcohol inside the cell.

Type:

transport

Pathway Components:

short-chain alcohol_Ext - OmpC - OmpF -> short-chain alcohol

Components:

Function	Name	Type
catalyzer	OmpC	protein
catalyzer	OmpF	protein
product	short-chain alcohol	simple_molecule
reactant	short-chain alcohol_Ext	simple_molecule

Name:

short-chain acid anion_Ext -> short-chain acid anion

Description:

Transport of short-chain acid anion_Ext through a bacterial membrane, leading to the presence of short-chain acid anion inside the cell.

Type:

transport

Pathway Components:

short-chain acid anion_Ext - OmpC - OmpF -> short-chain acid anion

Components:

Function	Name	Type
catalyzer	OmpC	protein
catalyzer	OmpF	protein
product	short-chain acid anion	simple_molecule
reactant	short-chain acid anion_Ext	simple_molecule

Name:

organosulfur compound_Ext -> organosulfur compound

Description:

Transport of organosulfur compound_Ext through a bacterial membrane, leading to the presence of organosulfur compound inside the cell.

Type:

transport

Pathway Components:

organosulfur compound_Ext - OmpC - OmpF -> organosulfur compound

Components:

Function	Name	Type
catalyzer	OmpC	protein
catalyzer	OmpF	protein
product	organosulfur compound	simple_molecule
reactant	organosulfur compound_Ext	simple_molecule

Name:

sulfadiazine_Ext -> sulfadiazine

Description:

Transport of sulfadiazine_Ext through a bacterial membrane, leading to the presence of sulfadiazine inside the cell.

Type:

transport

Pathway Components:

sulfadiazine_Ext - OmpC - OmpF -> sulfadiazine

Components:

Function	Name	Type
catalyzer	OmpC	protein
catalyzer	OmpF	protein
product	sulfadiazine	simple_molecule
reactant	sulfadiazine_Ext	simple_molecule

Name:

ion_Ext -> ion

Description:

Transport of ion_Ext through a bacterial membrane, leading to the presence of ion inside the cell.

Type:

transport

Pathway Components:

ion_Ext - OmpC - OmpF -> ion

Components:

Function	Name	Type
catalyzer	OmpC	protein
catalyzer	OmpF	protein
product	ion	simple_molecule
reactant	ion_Ext	simple_molecule

Name:

glycerol 1-phosphate_Ext -> glycerol 1-phosphate

Description:

Transport of glycerol 1-phosphate_Ext through a bacterial membrane, leading to the presence of glycerol 1-phosphate inside the cell.

Type:

transport

Pathway Components:

glycerol 1-phosphate_Ext - OmpC - OmpF -> glycerol 1-phosphate

Components:

Function	Name	Type
catalyzer	OmpC	protein
catalyzer	OmpF	protein
product	glycerol 1-phosphate	simple_molecule
reactant	glycerol 1-phosphate_Ext	simple_molecule

Name:

pgaABCD_mRNA -> PgaA

Description:

Translation of PgaA

Type:

translation

Pathway Components:

pgaABCD_mRNA -> PgaA

Components:

Function	Name	Type
product	PgaA	protein
reactant	pgaABCD_mRNA	RNA

Name:

partially N-deacetylated poly-beta-1,6-N-acetyl-D-glucosamine_Ext -> partially N-deacetylated poly-beta-1,6-N-acetyl-D-glucosamine

Description:

Transport of partially N-deacetylated poly-beta-1,6-N-acetyl-D-glucosamine_Ext through a bacterial membrane, leading to the presence of partially N-deacetylated poly-beta-1,6-N-acetyl-D-glucosamine inside the cell.

Type:

transport

Pathway Components:

partially N-deacetylated poly-beta-1,6-N-acetyl-D-glucosamine_Ext - PgaA -> partially N-deacetylated poly-beta-1,6-N-acetyl-D-glucosamine

Components:

Function	Name	Type
catalyzer	PgaA	protein
product	partially N-deacetylated poly-beta-1,6-N-acetyl-D-glucosamine	simple_molecule
reactant	partially N-deacetylated poly-beta-1,6-N-acetyl-D-glucosamine_Ext	simple_molecule

Name:

pgaABCD_mRNA -> PgaB

Description:

Translation of PgaB

Type:

translation

Pathway Components:

pgaABCD_mRNA -> PgaB

Components:

Function	Name	Type
product	PgaB	protein
reactant	pgaABCD_mRNA	RNA

Name:

poly-beta-1,6-N-acetyl-D-glucosamine -> partially N-deacetylated poly-beta-1,6-N-acetyl-D-glucosamine + acetate

Description:

Reaction transforming poly-beta-1,6-N-acetyl-D-glucosamine into partially N-deacetylated poly-beta-1,6-N-acetyl-D-glucosamine, acetate

Type:

state transition

Pathway Components:

poly-beta-1,6-N-acetyl-D-glucosamine - PgaB -> partially N-deacetylated poly-beta-1,6-N-acetyl-D-glucosamine + acetate

Components:

Function	Name	Type
catalyzer	PgaB	protein
product	acetate	simple_molecule
product	partially N-deacetylated poly-beta-1,6-N-acetyl-D-glucosamine	simple_molecule
reactant	poly-beta-1,6-N-acetyl-D-glucosamine	simple_molecule

Name:

pgaABCD_mRNA -> PgaC

Description:

Translation of PgaC

Type:

translation

Pathway Components:

pgaABCD_mRNA -> PgaC

Components:

Function	Name	Type
product	PgaC	protein
reactant	pgaABCD_mRNA	RNA

Name:

PgaC + PgaD -> PgaD-PgaC

Description:

Reaction transforming PgaC, PgaD into PgaD-PgaC

Type:

state transition

Pathway Components:

PgaC + PgaD -> PgaD-PgaC

Components:

Function	Name	Type
reactant	PgaC	protein
reactant	PgaD	protein
product	PgaD-PgaC	complex

Name:

poly-beta-1,6-N-acetyl-D-glucosamine_Ext -> poly-beta-1,6-N-acetyl-D-glucosamine

Description:

Transport of poly-beta-1,6-N-acetyl-D-glucosamine_Ext through a bacterial membrane, leading to the presence of poly-beta-1,6-N-acetyl-D-glucosamine inside the cell.

Type:

transport

Pathway Components:

poly-beta-1,6-N-acetyl-D-glucosamine_Ext - PgaD-PgaC -> poly-beta-1,6-N-acetyl-D-glucosamine

Components:

Function	Name	Type
catalyzer	PgaD-PgaC	complex
product	poly-beta-1,6-N-acetyl-D-glucosamine	simple_molecule
reactant	poly-beta-1,6-N-acetyl-D-glucosamine_Ext	simple_molecule

Name:

UDP-GlcNAc + NAcGlc -> poly-beta-1,6-N-acetyl-D-glucosamine + uridine-diphosphate

Description:

Reaction transforming UDP-GlcNAc, NAcGlc into poly-beta-1,6-N-acetyl-D-glucosamine, uridine-diphosphate

Type:

state transition

Pathway Components:

UDP-GlcNAc + NAcGlc - PgaD-PgaC -> poly-beta-1,6-N-acetyl-D-glucosamine + uridine-diphosphate

Components:

Function	Name	Type
reactant	NAcGlc	simple_molecule
catalyzer	PgaD-PgaC	complex
reactant	UDP-GlcNAc	simple_molecule
product	poly-beta-1,6-N-acetyl-D-glucosamine	simple_molecule
product	uridine-diphosphate	simple_molecule

Name:

pgaABCD_mRNA -> PgaD

Description:

Translation of PgaD

Type:

translation

Pathway Components:

pgaABCD_mRNA -> PgaD

Components:

Function	Name	Type
product	PgaD	protein
reactant	pgaABCD_mRNA	RNA

Name:

flhDC_mRNA -> FlhD

Description:

Translation of FlhD

Type:

translation

Pathway Components:

flhDC_mRNA -> FlhD

Components:

Function	Name	Type
product	FlhD	protein
reactant	flhDC_mRNA	RNA

Name:

FlhC + FlhD -> FlhD-FlhC

Description:

Reaction transforming FlhC, FlhD into FlhD-FlhC

Type:

state transition

Pathway Components:

FlhC + FlhD -> FlhD-FlhC

Components:

Function	Name	Type
reactant	FlhC	protein
reactant	FlhD	protein
product	FlhD-FlhC	complex

Name:

flhDC_mRNA -> FlhC

Description:

Translation of FlhC

Type:

translation

Pathway Components:

flhDC_mRNA -> FlhC

Components:

Function	Name	Type
product	FlhC	protein
reactant	flhDC_mRNA	RNA

Name:

dtpA_mRNA -> DtpA

Description:

Translation of DtpA

Type:

translation

Pathway Components:

dtpA_mRNA -> DtpA

Components:

Function	Name	Type
product	DtpA	protein
reactant	dtpA_mRNA	RNA

Name:

dipeptide_Ext -> dipeptide

Description:

Transport of dipeptide_Ext through a bacterial membrane, leading to the presence of dipeptide inside the cell.

Type:

transport

Pathway Components:

dipeptide_Ext - DtpA -> dipeptide

Components:

Function	Name	Type
catalyzer	DtpA	protein
product	dipeptide	simple_molecule
reactant	dipeptide_Ext	simple_molecule

Name:

Ala-γ-D-Glu-Dap_Ext -> Ala-γ-D-Glu-Dap

Description:

Transport of Ala-γ-D-Glu-Dap_Ext through a bacterial membrane, leading to the presence of Ala-γ-D-Glu-Dap inside the cell.

Type:

transport

Pathway Components:

Ala-γ-D-Glu-Dap_Ext - DtpA -> Ala-γ-D-Glu-Dap

Components:

Function	Name	Type
product	Ala-γ-D-Glu-Dap	simple_molecule
reactant	Ala-γ-D-Glu-Dap_Ext	simple_molecule
catalyzer	DtpA	protein

Name:

ecnB_mRNA -> EcnB

Description:

Translation of EcnB

Type:

translation

Pathway Components:

ecnB_mRNA -> EcnB

Components:

Function	Name	Type
product	EcnB	protein
reactant	ecnB_mRNA	RNA

Name:

csgDEFG_mRNA -> CsgD

Description:

Translation of CsgD

Type:

translation

Pathway Components:

csgDEFG_mRNA -> CsgD

Components:

Function	Name	Type
product	CsgD	protein
reactant	csgDEFG_mRNA	RNA

Name:

csgDEFG_mRNA -> CsgE

Description:

Translation of CsgE

Type:

translation

Pathway Components:

csgDEFG_mRNA -> CsgE

Components:

Function	Name	Type
product	CsgE	protein
reactant	csgDEFG_mRNA	RNA

Name:

CsgE + CsgG -> CsgE-CsgG

Description:

Reaction transforming CsgE, CsgG into CsgE-CsgG

Type:

state transition

Pathway Components:

CsgE + CsgG -> CsgE-CsgG

Components:

Function	Name	Type
reactant	CsgE	protein
product	CsgE-CsgG	complex
reactant	CsgG	protein

Name:

CsgA_Ext -> CsgA

Description:

Transport of CsgA_Ext through a bacterial membrane, leading to the presence of CsgA inside the cell.

Type:

transport

Pathway Components:

CsgA_Ext - CsgE-CsgG -> CsgA

Components:

Function	Name	Type
product	CsgA	simple_molecule
reactant	CsgA_Ext	simple_molecule
catalyzer	CsgE-CsgG	complex

Name:

csgDEFG_mRNA -> CsgF

Description:

Translation of CsgF

Type:

translation

Pathway Components:

csgDEFG_mRNA -> CsgF

Components:

Function	Name	Type
product	CsgF	protein
reactant	csgDEFG_mRNA	RNA

Name:

csgDEFG_mRNA -> CsgG

Description:

Translation of CsgG

Type:

translation

Pathway Components:

csgDEFG_mRNA -> CsgG

Components:

Function	Name	Type
product	CsgG	protein
reactant	csgDEFG_mRNA	RNA

Name:

micF_mRNA -> RNA:MicF

Description:

Translation of RNA:MicF

Type:

translation

Pathway Components:

micF_mRNA -> RNA:MicF

Components:

Function	Name	Type
product	RNA:MicF	protein
reactant	micF_mRNA	RNA

Name:

omrB_mRNA -> RNA:RygB

Description:

Translation of RNA:RygB

Type:

translation

Pathway Components:

omrB_mRNA -> RNA:RygB

Components:

Function	Name	Type
product	RNA:RygB	protein
reactant	omrB_mRNA	RNA

Name:

omrA_mRNA -> RNA:SraE

Description:

Translation of RNA:SraE

Type:

translation

Pathway Components:

omrA_mRNA -> RNA:SraE

Components:

Function	Name	Type
product	RNA:SraE	protein
reactant	omrA_mRNA	RNA

Name:

fadL_mRNA -> FadL

Description:

Translation of FadL

Type:

translation

Pathway Components:

fadL_mRNA -> FadL

Components:

Function	Name	Type
product	FadL	protein
reactant	fadL_mRNA	RNA

Name:

LCFA_Ext -> LCFA

Description:

Transport of LCFA_Ext through a bacterial membrane, leading to the presence of LCFA inside the cell.

Type:

transport

Pathway Components:

LCFA_Ext - FadL -> LCFA

Components:

Function	Name	Type
catalyzer	FadL	protein
product	LCFA	simple_molecule
reactant	LCFA_Ext	simple_molecule

Name:

ompF_mRNA -> OmpF

Description:

Translation of OmpF

Type:

translation

Pathway Components:

ompF_mRNA -> OmpF

Components:

Function	Name	Type
product	OmpF	protein
reactant	ompF_mRNA	RNA

Name:

OmpF + TolB -> TolB-OmpF

Description:

Reaction transforming OmpF, TolB into TolB-OmpF

Type:

state transition

Pathway Components:

OmpF + TolB -> TolB-OmpF

Components:

Function	Name	Type
reactant	OmpF	protein
reactant	TolB	protein
product	TolB-OmpF	complex

Name:

nmpC_mRNA -> NmpC

Description:

Translation of NmpC

Type:

translation

Pathway Components:

nmpC_mRNA -> NmpC

Components:

Function	Name	Type
product	NmpC	protein
reactant	nmpC_mRNA	RNA

Gensor Unit Map