RegulonDB

Name:

fdhF -> fdhF_mRNA

Description:

Transcription of transcription unit fdhF. Reaction activation by NarP-phosphate.

Type:

transcription

Pathway Components:

fdhF - NarP-phosphate -> fdhF_mRNA

Components:

Function	Name	Type
activator	NarP-phosphate	complex
reactant	fdhF	gene
product	fdhF_mRNA	RNA

Name:

hcp-hcr -> hcp-hcr_mRNA

Description:

Transcription of transcription unit hcp-hcr. Reaction activation by NarP-phosphate.

Type:

transcription

Pathway Components:

hcp-hcr - NarP-phosphate -> hcp-hcr_mRNA

Components:

Function	Name	Type
activator	NarP-phosphate	complex
reactant	hcp-hcr	gene
product	hcp-hcr_mRNA	RNA

Name:

hcp-hcr-poxB -> hcp-hcr-poxB_mRNA

Description:

Transcription of transcription unit hcp-hcr-poxB. Reaction activation by NarP-phosphate.

Type:

transcription

Pathway Components:

hcp-hcr-poxB - NarP-phosphate -> hcp-hcr-poxB_mRNA

Components:

Function	Name	Type
activator	NarP-phosphate	complex
reactant	hcp-hcr-poxB	gene
product	hcp-hcr-poxB_mRNA	RNA

Name:

napFDAGHBC-ccmABCDEFGH -> napFDAGHBC-ccmABCDEFGH_mRNA

Description:

Transcription of transcription unit napFDAGHBC-ccmABCDEFGH. Reaction activation by NarP-phosphate. Reaction inhibition by NarP-phosphate.

Type:

transcription

Pathway Components:

napFDAGHBC-ccmABCDEFGH - NarP-phosphate - NarP-phosphate -> napFDAGHBC-ccmABCDEFGH_mRNA

Components:

Function	Name	Type
activator	NarP-phosphate	complex
inhibitor	NarP-phosphate	complex
reactant	napFDAGHBC-ccmABCDEFGH	gene
product	napFDAGHBC-ccmABCDEFGH_mRNA	RNA

Name:

nirBDC-cysG -> nirBDC-cysG_mRNA

Description:

Transcription of transcription unit nirBDC-cysG. Reaction activation by NarP-phosphate.

Type:

transcription

Pathway Components:

nirBDC-cysG - NarP-phosphate -> nirBDC-cysG_mRNA

Components:

Function	Name	Type
activator	NarP-phosphate	complex
reactant	nirBDC-cysG	gene
product	nirBDC-cysG_mRNA	RNA

Name:

nrfABCDEFG -> nrfABCDEFG_mRNA

Description:

Transcription of transcription unit nrfABCDEFG. Reaction activation by NarP-phosphate.

Type:

transcription

Pathway Components:

nrfABCDEFG - NarP-phosphate -> nrfABCDEFG_mRNA

Components:

Function	Name	Type
activator	NarP-phosphate	complex
reactant	nrfABCDEFG	gene
product	nrfABCDEFG_mRNA	RNA

Name:

yeaR-yoaG -> yeaR-yoaG_mRNA

Description:

Transcription of transcription unit yeaR-yoaG. Reaction activation by NarP-phosphate.

Type:

transcription

Pathway Components:

yeaR-yoaG - NarP-phosphate -> yeaR-yoaG_mRNA

Components:

Function	Name	Type
activator	NarP-phosphate	complex
reactant	yeaR-yoaG	gene
product	yeaR-yoaG_mRNA	RNA

Name:

ytfE -> ytfE_mRNA

Description:

Transcription of transcription unit ytfE. Reaction activation by NarP-phosphate.

Type:

transcription

Pathway Components:

ytfE - NarP-phosphate -> ytfE_mRNA

Components:

Function	Name	Type
activator	NarP-phosphate	complex
reactant	ytfE	gene
product	ytfE_mRNA	RNA

Name:

fdnGHI -> fdnGHI_mRNA

Description:

Transcription of transcription unit fdnGHI. Reaction inhibition by NarP-phosphate.

Type:

transcription

Pathway Components:

fdnGHI - NarP-phosphate -> fdnGHI_mRNA

Components:

Function	Name	Type
inhibitor	NarP-phosphate	complex
reactant	fdnGHI	gene
product	fdnGHI_mRNA	RNA

Name:

hyaABCDEF -> hyaABCDEF_mRNA

Description:

Transcription of transcription unit hyaABCDEF. Reaction inhibition by NarP-phosphate.

Type:

transcription

Pathway Components:

hyaABCDEF - NarP-phosphate -> hyaABCDEF_mRNA

Components:

Function	Name	Type
inhibitor	NarP-phosphate	complex
reactant	hyaABCDEF	gene
product	hyaABCDEF_mRNA	RNA

Name:

norVW -> norVW_mRNA

Description:

Transcription of transcription unit norVW. Reaction inhibition by NarP-phosphate.

Type:

transcription

Pathway Components:

norVW - NarP-phosphate -> norVW_mRNA

Components:

Function	Name	Type
inhibitor	NarP-phosphate	complex
reactant	norVW	gene
product	norVW_mRNA	RNA

Name:

ydeP -> ydeP_mRNA

Description:

Transcription of transcription unit ydeP. Reaction inhibition by NarP-phosphate.

Type:

transcription

Pathway Components:

ydeP - NarP-phosphate -> ydeP_mRNA

Components:

Function	Name	Type
inhibitor	NarP-phosphate	complex
reactant	ydeP	gene
product	ydeP_mRNA	RNA

Name:

ydhYVWXUT -> ydhYVWXUT_mRNA

Description:

Transcription of transcription unit ydhYVWXUT. Reaction inhibition by NarP-phosphate.

Type:

transcription

Pathway Components:

ydhYVWXUT - NarP-phosphate -> ydhYVWXUT_mRNA

Components:

Function	Name	Type
inhibitor	NarP-phosphate	complex
reactant	ydhYVWXUT	gene
product	ydhYVWXUT_mRNA	RNA

Name:

nirBDC-cysG_mRNA -> NirB

Description:

Translation of NirB

Type:

translation

Pathway Components:

nirBDC-cysG_mRNA -> NirB

Components:

Function	Name	Type
product	NirB	protein
reactant	nirBDC-cysG_mRNA	RNA

Name:

NirB + NirD -> NirD-NirB

Description:

Reaction transforming NirB, NirD into NirD-NirB

Type:

state transition

Pathway Components:

NirB + NirD -> NirD-NirB

Components:

Function	Name	Type
reactant	NirB	protein
reactant	NirD	protein
product	NirD-NirB	complex

Name:

nitrite -> ammonium

Description:

Reaction transforming nitrite into ammonium

Type:

state transition

Pathway Components:

nitrite - NirD-NirB -> ammonium

Components:

Function	Name	Type
catalyzer	NirD-NirB	complex
product	ammonium	simple_molecule
reactant	nitrite	simple_molecule

Name:

nirBDC-cysG_mRNA -> NirD

Description:

Translation of NirD

Type:

translation

Pathway Components:

nirBDC-cysG_mRNA -> NirD

Components:

Function	Name	Type
product	NirD	protein
reactant	nirBDC-cysG_mRNA	RNA

Name:

nirBDC-cysG_mRNA -> NirC

Description:

Translation of NirC

Type:

translation

Pathway Components:

nirBDC-cysG_mRNA -> NirC

Components:

Function	Name	Type
product	NirC	protein
reactant	nirBDC-cysG_mRNA	RNA

Name:

nitrite_Ext -> nitrite

Description:

Transport of nitrite_Ext through a bacterial membrane, leading to the presence of nitrite inside the cell.

Type:

transport

Pathway Components:

nitrite_Ext - NirC -> nitrite

Components:

Function	Name	Type
catalyzer	NirC	protein
product	nitrite	simple_molecule
reactant	nitrite_Ext	simple_molecule

Name:

nirBDC-cysG_mRNA -> CysG

Description:

Translation of CysG

Type:

translation

Pathway Components:

nirBDC-cysG_mRNA -> CysG

Components:

Function	Name	Type
product	CysG	protein
reactant	nirBDC-cysG_mRNA	RNA

Name:

uroporphyrinogen-III + SAM -> adenosylhomocysteine + precorrin-2

Description:

Reaction transforming uroporphyrinogen-III, SAM into adenosylhomocysteine, precorrin-2

Type:

state transition

Pathway Components:

uroporphyrinogen-III + SAM - CysG -> adenosylhomocysteine + precorrin-2

Components:

Function	Name	Type
catalyzer	CysG	protein
reactant	SAM	simple_molecule
product	adenosylhomocysteine	simple_molecule
product	precorrin-2	simple_molecule
reactant	uroporphyrinogen-III	simple_molecule

Name:

precorrin-1 + SAM -> adenosylhomocysteine + precorrin-2

Description:

Reaction transforming precorrin-1, SAM into adenosylhomocysteine, precorrin-2

Type:

state transition

Pathway Components:

precorrin-1 + SAM - CysG -> adenosylhomocysteine + precorrin-2

Components:

Function	Name	Type
catalyzer	CysG	protein
reactant	SAM	simple_molecule
product	adenosylhomocysteine	simple_molecule
reactant	precorrin-1	simple_molecule
product	precorrin-2	simple_molecule

Name:

uroporphyrinogen-III + SAM -> adenosylhomocysteine + precorrin-1

Description:

Reaction transforming uroporphyrinogen-III, SAM into adenosylhomocysteine, precorrin-1

Type:

state transition

Pathway Components:

uroporphyrinogen-III + SAM - CysG -> adenosylhomocysteine + precorrin-1

Components:

Function	Name	Type
catalyzer	CysG	protein
reactant	SAM	simple_molecule
product	adenosylhomocysteine	simple_molecule
product	precorrin-1	simple_molecule
reactant	uroporphyrinogen-III	simple_molecule

Name:

precorrin-2 -> Precorrin

Description:

Reaction transforming precorrin-2 into Precorrin

Type:

state transition

Pathway Components:

precorrin-2 - CysG -> Precorrin

Components:

Function	Name	Type
catalyzer	CysG	protein
product	Precorrin	simple_molecule
reactant	precorrin-2	simple_molecule

Name:

Precorrin + Fe+2 -> siroheme

Description:

Reaction transforming Precorrin, Fe+2 into siroheme

Type:

state transition

Pathway Components:

Precorrin + Fe+2 - CysG -> siroheme

Components:

Function	Name	Type
catalyzer	CysG	protein
reactant	Fe+2	simple_molecule
reactant	Precorrin	simple_molecule
product	siroheme	simple_molecule

Name:

ydeP_mRNA -> YdeP

Description:

Translation of YdeP

Type:

translation

Pathway Components:

ydeP_mRNA -> YdeP

Components:

Function	Name	Type
product	YdeP	protein
reactant	ydeP_mRNA	RNA

Name:

ydhYVWXUT_mRNA -> YdhY

Description:

Translation of YdhY

Type:

translation

Pathway Components:

ydhYVWXUT_mRNA -> YdhY

Components:

Function	Name	Type
product	YdhY	protein
reactant	ydhYVWXUT_mRNA	RNA

Name:

ydhYVWXUT_mRNA -> YdhV

Description:

Translation of YdhV

Type:

translation

Pathway Components:

ydhYVWXUT_mRNA -> YdhV

Components:

Function	Name	Type
product	YdhV	protein
reactant	ydhYVWXUT_mRNA	RNA

Name:

ydhYVWXUT_mRNA -> YdhW

Description:

Translation of YdhW

Type:

translation

Pathway Components:

ydhYVWXUT_mRNA -> YdhW

Components:

Function	Name	Type
product	YdhW	protein
reactant	ydhYVWXUT_mRNA	RNA

Name:

ydhYVWXUT_mRNA -> YdhX

Description:

Translation of YdhX

Type:

translation

Pathway Components:

ydhYVWXUT_mRNA -> YdhX

Components:

Function	Name	Type
product	YdhX	protein
reactant	ydhYVWXUT_mRNA	RNA

Name:

ydhYVWXUT_mRNA -> YdhU

Description:

Translation of YdhU

Type:

translation

Pathway Components:

ydhYVWXUT_mRNA -> YdhU

Components:

Function	Name	Type
product	YdhU	protein
reactant	ydhYVWXUT_mRNA	RNA

Name:

ydhYVWXUT_mRNA -> YdhT

Description:

Translation of YdhT

Type:

translation

Pathway Components:

ydhYVWXUT_mRNA -> YdhT

Components:

Function	Name	Type
product	YdhT	protein
reactant	ydhYVWXUT_mRNA	RNA

Name:

hyaABCDEF_mRNA -> HyaA

Description:

Translation of HyaA

Type:

translation

Pathway Components:

hyaABCDEF_mRNA -> HyaA

Components:

Function	Name	Type
product	HyaA	protein
reactant	hyaABCDEF_mRNA	RNA

Name:

HyaB + HyaA + HyaC -> HyaA-HyaB-HyaC

Description:

Reaction transforming HyaB, HyaA, HyaC into HyaA-HyaB-HyaC

Type:

state transition

Pathway Components:

HyaB + HyaA + HyaC -> HyaA-HyaB-HyaC

Components:

Function	Name	Type
reactant	HyaA	protein
product	HyaA-HyaB-HyaC	complex
reactant	HyaB	protein
reactant	HyaC	protein

Name:

hyaABCDEF_mRNA -> HyaB

Description:

Translation of HyaB

Type:

translation

Pathway Components:

hyaABCDEF_mRNA -> HyaB

Components:

Function	Name	Type
product	HyaB	protein
reactant	hyaABCDEF_mRNA	RNA

Name:

hyaABCDEF_mRNA -> HyaC

Description:

Translation of HyaC

Type:

translation

Pathway Components:

hyaABCDEF_mRNA -> HyaC

Components:

Function	Name	Type
product	HyaC	protein
reactant	hyaABCDEF_mRNA	RNA

Name:

hyaABCDEF_mRNA -> HyaD

Description:

Translation of HyaD

Type:

translation

Pathway Components:

hyaABCDEF_mRNA -> HyaD

Components:

Function	Name	Type
product	HyaD	protein
reactant	hyaABCDEF_mRNA	RNA

Name:

hyaABCDEF_mRNA -> HyaE

Description:

Translation of HyaE

Type:

translation

Pathway Components:

hyaABCDEF_mRNA -> HyaE

Components:

Function	Name	Type
product	HyaE	protein
reactant	hyaABCDEF_mRNA	RNA

Name:

hyaABCDEF_mRNA -> HyaF

Description:

Translation of HyaF

Type:

translation

Pathway Components:

hyaABCDEF_mRNA -> HyaF

Components:

Function	Name	Type
product	HyaF	protein
reactant	hyaABCDEF_mRNA	RNA

Name:

yeaR-yoaG_mRNA -> YeaR

Description:

Translation of YeaR

Type:

translation

Pathway Components:

yeaR-yoaG_mRNA -> YeaR

Components:

Function	Name	Type
product	YeaR	protein
reactant	yeaR-yoaG_mRNA	RNA

Name:

yeaR-yoaG_mRNA -> YoaG

Description:

Translation of YoaG

Type:

translation

Pathway Components:

yeaR-yoaG_mRNA -> YoaG

Components:

Function	Name	Type
product	YoaG	protein
reactant	yeaR-yoaG_mRNA	RNA

Name:

fdhF_mRNA -> FdhF

Description:

Translation of FdhF

Type:

translation

Pathway Components:

fdhF_mRNA -> FdhF

Components:

Function	Name	Type
product	FdhF	protein
reactant	fdhF_mRNA	RNA

Name:

HycC + HycB + FdhF + HycG + HycF + HycD + HycE -> FdhF-HycE-HycB-HycG-HycF-HycC-HycD

Description:

Reaction transforming HycC, HycB, FdhF, HycG, HycF, HycD, HycE into FdhF-HycE-HycB-HycG-HycF-HycC-HycD

Type:

state transition

Pathway Components:

HycC + HycB + FdhF + HycG + HycF + HycD + HycE -> FdhF-HycE-HycB-HycG-HycF-HycC-HycD

Components:

Function	Name	Type
reactant	FdhF	protein
product	FdhF-HycE-HycB-HycG-HycF-HycC-HycD	complex
reactant	HycB	protein
reactant	HycC	protein
reactant	HycD	protein
reactant	HycE	protein
reactant	HycF	protein
reactant	HycG	protein

Name:

formate -> hydrogen + CO2

Description:

Reaction transforming formate into hydrogen, CO2

Type:

state transition

Pathway Components:

formate - FdhF-HycE-HycB-HycG-HycF-HycC-HycD -> hydrogen + CO2

Components:

Function	Name	Type
product	CO2	simple_molecule
catalyzer	FdhF-HycE-HycB-HycG-HycF-HycC-HycD	complex
reactant	formate	simple_molecule
product	hydrogen	simple_molecule

Name:

oxidized hydrogenase 3 + formate -> reduced hydrogenase 3 + CO2

Description:

Reaction transforming oxidized hydrogenase 3, formate into reduced hydrogenase 3, CO2

Type:

state transition

Pathway Components:

oxidized hydrogenase 3 + formate - FdhF -> reduced hydrogenase 3 + CO2

Components:

Function	Name	Type
product	CO2	simple_molecule
catalyzer	FdhF	protein
reactant	formate	simple_molecule
reactant	oxidized hydrogenase 3	simple_molecule
product	reduced hydrogenase 3	simple_molecule

Name:

acceptors + formate -> A(H2) + CO2

Description:

Reaction transforming acceptors, formate into A(H2), CO2

Type:

state transition

Pathway Components:

acceptors + formate - FdhF - nitrate - nitrite -> A(H2) + CO2

Components:

Function	Name	Type
product	A(H2)	simple_molecule
product	CO2	simple_molecule
catalyzer	FdhF	protein
reactant	acceptors	simple_molecule
reactant	formate	simple_molecule
inhibitor	nitrate	simple_molecule
inhibitor	nitrite	simple_molecule

Name:

hcp-hcr_mRNA -> Hcp

Description:

Translation of Hcp

Type:

translation

Pathway Components:

hcp-hcr_mRNA -> Hcp

Components:

Function	Name	Type
product	Hcp	protein
reactant	hcp-hcr_mRNA	RNA

Name:

NH2OH + A(H2) -> acceptors + ammonium

Description:

Reaction transforming NH2OH, A(H2) into acceptors, ammonium

Type:

state transition

Pathway Components:

NH2OH + A(H2) - Hcp -> acceptors + ammonium

Components:

Function	Name	Type
reactant	A(H2)	simple_molecule
catalyzer	Hcp	protein
reactant	NH2OH	simple_molecule
product	acceptors	simple_molecule
product	ammonium	simple_molecule

Name:

hcp-hcr_mRNA -> Hcr

Description:

Translation of Hcr

Type:

translation

Pathway Components:

hcp-hcr_mRNA -> Hcr

Components:

Function	Name	Type
product	Hcr	protein
reactant	hcp-hcr_mRNA	RNA

Name:

oxidized hybrid-cluster protein -> reduced hybrid-cluster protein

Description:

Reaction transforming oxidized hybrid-cluster protein into reduced hybrid-cluster protein

Type:

state transition

Pathway Components:

oxidized hybrid-cluster protein - Hcr -> reduced hybrid-cluster protein

Components:

Function	Name	Type
catalyzer	Hcr	protein
reactant	oxidized hybrid-cluster protein	simple_molecule
product	reduced hybrid-cluster protein	simple_molecule

Name:

norVW_mRNA -> NorV

Description:

Translation of NorV

Type:

translation

Pathway Components:

norVW_mRNA -> NorV

Components:

Function	Name	Type
product	NorV	protein
reactant	norVW_mRNA	RNA

Name:

norVW_mRNA -> FlRd

Description:

Translation of FlRd

Type:

translation

Pathway Components:

norVW_mRNA -> FlRd

Components:

Function	Name	Type
product	FlRd	simple_molecule
reactant	norVW_mRNA	RNA

Name:

norVW_mRNA -> NorW

Description:

Translation of NorW

Type:

translation

Pathway Components:

norVW_mRNA -> NorW

Components:

Function	Name	Type
product	NorW	protein
reactant	norVW_mRNA	RNA

Name:

oxidized flavorubredoxin -> FlRd

Description:

Reaction transforming oxidized flavorubredoxin into FlRd

Type:

state transition

Pathway Components:

oxidized flavorubredoxin - NorW -> FlRd

Components:

Function	Name	Type
product	FlRd	simple_molecule
catalyzer	NorW	protein
reactant	oxidized flavorubredoxin	simple_molecule

Name:

ytfE_mRNA -> YtfE

Description:

Translation of YtfE

Type:

translation

Pathway Components:

ytfE_mRNA -> YtfE

Components:

Function	Name	Type
product	YtfE	protein
reactant	ytfE_mRNA	RNA

Name:

fdnGHI_mRNA -> FdnG

Description:

Translation of FdnG

Type:

translation

Pathway Components:

fdnGHI_mRNA -> FdnG

Components:

Function	Name	Type
product	FdnG	protein
reactant	fdnGHI_mRNA	RNA

Name:

FdnG + FdnI + FdnH -> FdnI-FdnH-FdnG

Description:

Reaction transforming FdnG, FdnI, FdnH into FdnI-FdnH-FdnG

Type:

state transition

Pathway Components:

FdnG + FdnI + FdnH -> FdnI-FdnH-FdnG

Components:

Function	Name	Type
reactant	FdnG	protein
reactant	FdnH	protein
reactant	FdnI	protein
product	FdnI-FdnH-FdnG	complex

Name:

fdnGHI_mRNA -> FdnH

Description:

Translation of FdnH

Type:

translation

Pathway Components:

fdnGHI_mRNA -> FdnH

Components:

Function	Name	Type
product	FdnH	protein
reactant	fdnGHI_mRNA	RNA

Name:

fdnGHI_mRNA -> FdnI

Description:

Translation of FdnI

Type:

translation

Pathway Components:

fdnGHI_mRNA -> FdnI

Components:

Function	Name	Type
product	FdnI	protein
reactant	fdnGHI_mRNA	RNA

Name:

nrfABCDEFG_mRNA -> NrfA

Description:

Translation of NrfA

Type:

translation

Pathway Components:

nrfABCDEFG_mRNA -> NrfA

Components:

Function	Name	Type
product	NrfA	protein
reactant	nrfABCDEFG_mRNA	RNA

Name:

NrfB + NrfA -> NrfA-NrfB

Description:

Reaction transforming NrfB, NrfA into NrfA-NrfB

Type:

state transition

Pathway Components:

NrfB + NrfA -> NrfA-NrfB

Components:

Function	Name	Type
reactant	NrfA	protein
product	NrfA-NrfB	complex
reactant	NrfB	protein

Name:

a-reduced-NrfB-protein + nitrite -> an-oxidized-NrfB-protein + ammonium

Description:

Reaction transforming a-reduced-NrfB-protein, nitrite into an-oxidized-NrfB-protein, ammonium

Type:

state transition

Pathway Components:

a-reduced-NrfB-protein + nitrite - NrfA -> an-oxidized-NrfB-protein + ammonium

Components:

Function	Name	Type
catalyzer	NrfA	protein
reactant	a-reduced-NrfB-protein	simple_molecule
product	ammonium	simple_molecule
product	an-oxidized-NrfB-protein	simple_molecule
reactant	nitrite	simple_molecule

Name:

nrfABCDEFG_mRNA -> NrfB

Description:

Translation of NrfB

Type:

translation

Pathway Components:

nrfABCDEFG_mRNA -> NrfB

Components:

Function	Name	Type
product	NrfB	protein
reactant	nrfABCDEFG_mRNA	RNA

Name:

nrfABCDEFG_mRNA -> NrfC

Description:

Translation of NrfC

Type:

translation

Pathway Components:

nrfABCDEFG_mRNA -> NrfC

Components:

Function	Name	Type
product	NrfC	protein
reactant	nrfABCDEFG_mRNA	RNA

Name:

NrfD + NrfC -> NrfD-NrfC

Description:

Reaction transforming NrfD, NrfC into NrfD-NrfC

Type:

state transition

Pathway Components:

NrfD + NrfC -> NrfD-NrfC

Components:

Function	Name	Type
reactant	NrfC	protein
reactant	NrfD	protein
product	NrfD-NrfC	complex

Name:

an-oxidized-NrfB-protein + menaquinol -> a-reduced-NrfB-protein + vitamin K2

Description:

Reaction transforming an-oxidized-NrfB-protein, menaquinol into a-reduced-NrfB-protein, vitamin K2

Type:

state transition

Pathway Components:

an-oxidized-NrfB-protein + menaquinol - NrfD-NrfC -> a-reduced-NrfB-protein + vitamin K2

Components:

Function	Name	Type
catalyzer	NrfD-NrfC	complex
product	a-reduced-NrfB-protein	simple_molecule
reactant	an-oxidized-NrfB-protein	simple_molecule
reactant	menaquinol	simple_molecule
product	vitamin K2	simple_molecule

Name:

nrfABCDEFG_mRNA -> NrfD

Description:

Translation of NrfD

Type:

translation

Pathway Components:

nrfABCDEFG_mRNA -> NrfD

Components:

Function	Name	Type
product	NrfD	protein
reactant	nrfABCDEFG_mRNA	RNA

Name:

nrfABCDEFG_mRNA -> NrfE

Description:

Translation of NrfE

Type:

translation

Pathway Components:

nrfABCDEFG_mRNA -> NrfE

Components:

Function	Name	Type
product	NrfE	protein
reactant	nrfABCDEFG_mRNA	RNA

Name:

nrfABCDEFG_mRNA -> NrfF

Description:

Translation of NrfF

Type:

translation

Pathway Components:

nrfABCDEFG_mRNA -> NrfF

Components:

Function	Name	Type
product	NrfF	protein
reactant	nrfABCDEFG_mRNA	RNA

Name:

nrfABCDEFG_mRNA -> NrfG

Description:

Translation of NrfG

Type:

translation

Pathway Components:

nrfABCDEFG_mRNA -> NrfG

Components:

Function	Name	Type
product	NrfG	protein
reactant	nrfABCDEFG_mRNA	RNA

Name:

napFDAGHBC-ccmABCDEFGH_mRNA -> NapF

Description:

Translation of NapF

Type:

translation

Pathway Components:

napFDAGHBC-ccmABCDEFGH_mRNA -> NapF

Components:

Function	Name	Type
product	NapF	protein
reactant	napFDAGHBC-ccmABCDEFGH_mRNA	RNA

Name:

napFDAGHBC-ccmABCDEFGH_mRNA -> NapD

Description:

Translation of NapD

Type:

translation

Pathway Components:

napFDAGHBC-ccmABCDEFGH_mRNA -> NapD

Components:

Function	Name	Type
product	NapD	protein
reactant	napFDAGHBC-ccmABCDEFGH_mRNA	RNA

Name:

napFDAGHBC-ccmABCDEFGH_mRNA -> NapA

Description:

Translation of NapA

Type:

translation

Pathway Components:

napFDAGHBC-ccmABCDEFGH_mRNA -> NapA

Components:

Function	Name	Type
product	NapA	protein
reactant	napFDAGHBC-ccmABCDEFGH_mRNA	RNA

Name:

NapA + NapB -> NapB-NapA

Description:

Reaction transforming NapA, NapB into NapB-NapA

Type:

state transition

Pathway Components:

NapA + NapB -> NapB-NapA

Components:

Function	Name	Type
reactant	NapA	protein
reactant	NapB	protein
product	NapB-NapA	complex

Name:

Reduced-NapC-proteins + nitrate -> Oxidized-NapC-proteins + nitrite

Description:

Reaction transforming Reduced-NapC-proteins, nitrate into Oxidized-NapC-proteins, nitrite

Type:

state transition

Pathway Components:

Reduced-NapC-proteins + nitrate - NapB-NapA -> Oxidized-NapC-proteins + nitrite

Components:

Function	Name	Type
catalyzer	NapB-NapA	complex
product	Oxidized-NapC-proteins	simple_molecule
reactant	Reduced-NapC-proteins	simple_molecule
reactant	nitrate	simple_molecule
product	nitrite	simple_molecule

Name:

napFDAGHBC-ccmABCDEFGH_mRNA -> NapG

Description:

Translation of NapG

Type:

translation

Pathway Components:

napFDAGHBC-ccmABCDEFGH_mRNA -> NapG

Components:

Function	Name	Type
product	NapG	protein
reactant	napFDAGHBC-ccmABCDEFGH_mRNA	RNA

Name:

NapG + NapH -> NapG-NapH

Description:

Reaction transforming NapG, NapH into NapG-NapH

Type:

state transition

Pathway Components:

NapG + NapH -> NapG-NapH

Components:

Function	Name	Type
reactant	NapG	protein
product	NapG-NapH	complex
reactant	NapH	protein

Name:

Oxidized-NapC-proteins + ubiquinol -> Reduced-NapC-proteins + ubiquinone

Description:

Reaction transforming Oxidized-NapC-proteins, ubiquinol into Reduced-NapC-proteins, ubiquinone

Type:

state transition

Pathway Components:

Oxidized-NapC-proteins + ubiquinol - NapG-NapH -> Reduced-NapC-proteins + ubiquinone

Components:

Function	Name	Type
catalyzer	NapG-NapH	complex
reactant	Oxidized-NapC-proteins	simple_molecule
product	Reduced-NapC-proteins	simple_molecule
reactant	ubiquinol	simple_molecule
product	ubiquinone	simple_molecule

Name:

napFDAGHBC-ccmABCDEFGH_mRNA -> NapH

Description:

Translation of NapH

Type:

translation

Pathway Components:

napFDAGHBC-ccmABCDEFGH_mRNA -> NapH

Components:

Function	Name	Type
product	NapH	protein
reactant	napFDAGHBC-ccmABCDEFGH_mRNA	RNA

Name:

napFDAGHBC-ccmABCDEFGH_mRNA -> NapB

Description:

Translation of NapB

Type:

translation

Pathway Components:

napFDAGHBC-ccmABCDEFGH_mRNA -> NapB

Components:

Function	Name	Type
product	NapB	protein
reactant	napFDAGHBC-ccmABCDEFGH_mRNA	RNA

Name:

napFDAGHBC-ccmABCDEFGH_mRNA -> NapC

Description:

Translation of NapC

Type:

translation

Pathway Components:

napFDAGHBC-ccmABCDEFGH_mRNA -> NapC

Components:

Function	Name	Type
product	NapC	protein
reactant	napFDAGHBC-ccmABCDEFGH_mRNA	RNA

Name:

ferri c-type cytochrome + menaquinol -> reduced Cytochrome C protein + vitamin K2

Description:

Reaction transforming ferri c-type cytochrome, menaquinol into reduced Cytochrome C protein, vitamin K2

Type:

state transition

Pathway Components:

ferri c-type cytochrome + menaquinol - NapC -> reduced Cytochrome C protein + vitamin K2

Components:

Function	Name	Type
catalyzer	NapC	protein
reactant	ferri c-type cytochrome	simple_molecule
reactant	menaquinol	simple_molecule
product	reduced Cytochrome C protein	simple_molecule
product	vitamin K2	simple_molecule

Name:

napFDAGHBC-ccmABCDEFGH_mRNA -> CcmA

Description:

Translation of CcmA

Type:

translation

Pathway Components:

napFDAGHBC-ccmABCDEFGH_mRNA -> CcmA

Components:

Function	Name	Type
product	CcmA	protein
reactant	napFDAGHBC-ccmABCDEFGH_mRNA	RNA

Name:

CcmD + CcmC + CcmB + CcmE + CcmA -> CcmD-CcmB-CcmA-CcmE-CcmC

Description:

Reaction transforming CcmD, CcmC, CcmB, CcmE, CcmA into CcmD-CcmB-CcmA-CcmE-CcmC

Type:

state transition

Pathway Components:

CcmD + CcmC + CcmB + CcmE + CcmA -> CcmD-CcmB-CcmA-CcmE-CcmC

Components:

Function	Name	Type
reactant	CcmA	protein
reactant	CcmB	protein
reactant	CcmC	protein
reactant	CcmD	protein
product	CcmD-CcmB-CcmA-CcmE-CcmC	complex
reactant	CcmE	protein

Name:

protoheme IX_Ext -> protoheme IX

Description:

Transport of protoheme IX_Ext through a bacterial membrane, leading to the presence of protoheme IX inside the cell.

Type:

transport

Pathway Components:

protoheme IX_Ext - CcmD-CcmB-CcmA-CcmE-CcmC -> protoheme IX

Components:

Function	Name	Type
catalyzer	CcmD-CcmB-CcmA-CcmE-CcmC	complex
product	protoheme IX	simple_molecule
reactant	protoheme IX_Ext	simple_molecule

Name:

napFDAGHBC-ccmABCDEFGH_mRNA -> CcmB

Description:

Translation of CcmB

Type:

translation

Pathway Components:

napFDAGHBC-ccmABCDEFGH_mRNA -> CcmB

Components:

Function	Name	Type
product	CcmB	protein
reactant	napFDAGHBC-ccmABCDEFGH_mRNA	RNA

Name:

napFDAGHBC-ccmABCDEFGH_mRNA -> CcmC

Description:

Translation of CcmC

Type:

translation

Pathway Components:

napFDAGHBC-ccmABCDEFGH_mRNA -> CcmC

Components:

Function	Name	Type
product	CcmC	protein
reactant	napFDAGHBC-ccmABCDEFGH_mRNA	RNA

Name:

napFDAGHBC-ccmABCDEFGH_mRNA -> CcmD

Description:

Translation of CcmD

Type:

translation

Pathway Components:

napFDAGHBC-ccmABCDEFGH_mRNA -> CcmD

Components:

Function	Name	Type
product	CcmD	protein
reactant	napFDAGHBC-ccmABCDEFGH_mRNA	RNA

Name:

napFDAGHBC-ccmABCDEFGH_mRNA -> CcmE

Description:

Translation of CcmE

Type:

translation

Pathway Components:

napFDAGHBC-ccmABCDEFGH_mRNA -> CcmE

Components:

Function	Name	Type
product	CcmE	protein
reactant	napFDAGHBC-ccmABCDEFGH_mRNA	RNA

Name:

CcmG + CcmF + CcmH + CcmE -> CcmE-CcmF-CcmG-CcmH

Description:

Reaction transforming CcmG, CcmF, CcmH, CcmE into CcmE-CcmF-CcmG-CcmH

Type:

state transition

Pathway Components:

CcmG + CcmF + CcmH + CcmE -> CcmE-CcmF-CcmG-CcmH

Components:

Function	Name	Type
reactant	CcmE	protein
product	CcmE-CcmF-CcmG-CcmH	complex
reactant	CcmF	protein
reactant	CcmG	protein
reactant	CcmH	protein

Name:

napFDAGHBC-ccmABCDEFGH_mRNA -> CcmF

Description:

Translation of CcmF

Type:

translation

Pathway Components:

napFDAGHBC-ccmABCDEFGH_mRNA -> CcmF

Components:

Function	Name	Type
product	CcmF	protein
reactant	napFDAGHBC-ccmABCDEFGH_mRNA	RNA

Name:

napFDAGHBC-ccmABCDEFGH_mRNA -> CcmG

Description:

Translation of CcmG

Type:

translation

Pathway Components:

napFDAGHBC-ccmABCDEFGH_mRNA -> CcmG

Components:

Function	Name	Type
product	CcmG	protein
reactant	napFDAGHBC-ccmABCDEFGH_mRNA	RNA

Name:

napFDAGHBC-ccmABCDEFGH_mRNA -> CcmH

Description:

Translation of CcmH

Type:

translation

Pathway Components:

napFDAGHBC-ccmABCDEFGH_mRNA -> CcmH

Components:

Function	Name	Type
product	CcmH	protein
reactant	napFDAGHBC-ccmABCDEFGH_mRNA	RNA

Name:

hcp-hcr-poxB_mRNA -> Hcp

Description:

Translation of Hcp

Type:

translation

Pathway Components:

hcp-hcr-poxB_mRNA -> Hcp

Components:

Function	Name	Type
product	Hcp	protein
reactant	hcp-hcr-poxB_mRNA	RNA

Name:

hcp-hcr-poxB_mRNA -> Hcr

Description:

Translation of Hcr

Type:

translation

Pathway Components:

hcp-hcr-poxB_mRNA -> Hcr

Components:

Function	Name	Type
product	Hcr	protein
reactant	hcp-hcr-poxB_mRNA	RNA

Name:

hcp-hcr-poxB_mRNA -> PoxB

Description:

Translation of PoxB

Type:

translation

Pathway Components:

hcp-hcr-poxB_mRNA -> PoxB

Components:

Function	Name	Type
product	PoxB	protein
reactant	hcp-hcr-poxB_mRNA	RNA

Name:

ubiquinone + pyruvate -> ubiquinol + acetate + CO2

Description:

Reaction transforming ubiquinone, pyruvate into ubiquinol, acetate , CO2

Type:

state transition

Pathway Components:

ubiquinone + pyruvate - PoxB -> ubiquinol + acetate + CO2

Components:

Function	Name	Type
product	CO2	simple_molecule
catalyzer	PoxB	protein
product	acetate	simple_molecule
reactant	pyruvate	simple_molecule
product	ubiquinol	simple_molecule
reactant	ubiquinone	simple_molecule

Name:

pyruvate + ethanal -> acetoin + CO2

Description:

Reaction transforming pyruvate, ethanal into acetoin, CO2

Type:

state transition

Pathway Components:

pyruvate + ethanal - PoxB -> acetoin + CO2

Components:

Function	Name	Type
product	CO2	simple_molecule
catalyzer	PoxB	protein
product	acetoin	simple_molecule
reactant	ethanal	simple_molecule
reactant	pyruvate	simple_molecule

Gensor Unit Map