RegulonDB RegulonDB

NarL Genetic Sensory Response Unit in Escherichia coli K-12 genome


Gensor Unit Map          
L-malate L-malate_Ext 2'-(5-triphosphoribosyl)-3'-dephospho-CoA 2-oxobutyrate 3-octaprenyl-4-hydroxybenzoate 4-hydroxybenzoate AdhE AspA CO2 CaiF CcmA CcmB CcmC CcmD CcmE CcmF CcmG CcmH CitC CitD CitE CitF CitG CitX CydC CydD CysG D-tartrate D-tartrate_Ext DNA guanine DcuA DcuB DcuR DcuS DmsA DmsB DmsC DmsD DpiA DpiB FdhF FdnG FdnH FdnI Fe+2 FocA FrdA FrdB FrdC FrdD FumB H2 H2_Ext Hcp Hcr HyaA HyaB HyaC HyaD HyaE HyaF HybA HybB HybC HybD HybE HybF HybG HybO HycB HycD HycE HycF HycG asp asp_Ext L-cysteine L-cysteine_Ext MoeA MoeB NapA NapB NapD NapF NapG NapH NarG NarH NarI NarJ NarK NarL nickel nickel_Ext NikB NikC NikE NikR NirB NirC NirD NorV NorW NrfA NrfB NrfC NrfD NrfE NrfF NrfG NuoA NuoB NuoC NuoE NuoF NuoG NuoH NuoI NuoJ NuoK NuoL NuoM NuoN Ogt pyruvate formate lyase, active form PflB S-adenosyl-L-homocysteine S-adenosyl-L-methionine TorA TorC TorD UbiA UbiC YdhT YdhU YdhV YdhW YdhX YdhY YeaR YnfE YnfF YnfG YnfH YoaG YtfE a C4-dicarboxylate a C4-dicarboxylate_Ext DNA 6-O-methylguanine a [citrate-lyase] (acetyl form) a [citrate-lyase] (citryl form) a [citrate-lyase] (thiol form) peptide cysteine carboxy-adenylated MoaD a citrate lyase apo-[acyl-carrier protein] a citrate lyase holo-[acyl-carrier protein] a menaquinol a menaquinol_Ext menaquinone menaquinone_Ext 1-Alcohol a protein-S-methyl-L-cysteine reduced Cytochrome C protein a reduced cytochrome c552 a reduced electron acceptor a reduced hydrogenase 3 a small subunit of molybdopterin synthase acetaldehyde ac-CoA adenine H2Dtpp-mADP adhE adhE_mRNA OPP ammonia RCHO an oxidized  c-type cytochrome an oxidized cytochrome c552 an oxidized electron acceptor an oxidized hydrogenase 3 an ubiquinol ubiquinone ubiquinone_Ext aspA aspA-dcuA aspA-dcuA_mRNA aspA_mRNA caiF caiF_mRNA chorismate citCDEFXG citCDEFXG_mRNA cit CoA cydDC cydDC_mRNA dcuB-fumB dcuB-fumB_mRNA dcuSR dcuSR_mRNA dephospho-CoA DMS DMSO PP dmsABC dmsABC_mRNA dpiBA dpiBA_mRNA eth fdhF fdhF_mRNA fdnGHI fdnGHI_mRNA focA-pflB focA-pflB_mRNA formate formate_Ext frdABCD frdABCD_mRNA fumarate fumarate_Ext GSH GSH_Ext hcp-hcr hcp-hcr_mRNA hyaABCDEF hyaABCDEF_mRNA hybOABCDEFG hybOABCDEFG_mRNA NH2OH moeAB moeAB_mRNA molybdate molybdenum cofactor napFDAGHBC-ccmABCDEFGH napFDAGHBC-ccmABCDEFGH_mRNA narGHJI narGHJI_mRNA narK narK_mRNA nikABCDER nikABCDER_mRNA nirBDC-cysG nirBDC-cysG_mRNA nitrate nitrate_Ext NO nitrite nitrite_Ext nitrous oxide norVW norVW_mRNA nrfABCDEFG nrfABCDEFG_mRNA nuoABCEFGHIJKLMN nuoABCEFGHIJKLMN_mRNA ogt ogt_mRNA oxalacetate oxidized flavorubredoxin phosphate precorrin-1 precorrin-2 propanoyl-CoA protoheme IX protoheme IX_Ext pyruvate pyruvate formate-lyase FlRd selenate selenite siroheme Precorrin succinate succinate_Ext torCAD torCAD_mRNA (CH3)3NH TMAO ubiCA ubiCA_mRNA uroporphyrinogen-III ydhYVWXUT ydhYVWXUT_mRNA yeaR-yoaG yeaR-yoaG_mRNA ynfEFGH-dmsD ynfEFGH-dmsD_mRNA ytfE ytfE_mRNA |Ox-Hybrid-Cluster-Proteins| |Red-Hybrid-Cluster-Proteins| phosphate NikA a [citrate-lyase] (acetyl form) acetate PP PP succinate succinate_Ext succinate succinate_Ext succinate fumarate fumarate fumarate succinate oxalacetate asp succinate_Ext nitrate_Ext nitrite nitrite menaquinone menaquinone_Ext formate_Ext CO2 a reduced electron acceptor a reduced electron acceptor menaquinone menaquinone pyruvate an ubiquinol phosphate phosphate phosphate formate CoA formate formate formate formate CO2 CO2 an oxidized electron acceptor an oxidized electron acceptor a menaquinol a menaquinol menaquinone_Ext nitrite a menaquinol menaquinone_Ext H2_Ext PP S-adenosyl-L-homocysteine NikD HycC HycE HycB HycG HycD HycF FdhF HycC CitD CitE CitF NirD NirB NapH NapA NapB NapG CcmA CcmE CcmB CcmD CcmC NapC HyaB HyaA HyaC NarG NarH NarI HybC HybA HybB HybO NuoN NuoM NuoL NuoJ NuoK NuoI NuoH NuoF NuoG NuoE NuoC NuoA NuoB NikA NikB NikC NikD NikE CydC CydD DmsA DmsB DmsC FdnI FdnH FdnG TorA TorC YnfG YnfE YnfF YnfH NrfC NrfA NrfB NrfD a menaquinol


Gensor Unit       
Name: NarL
Signal name: Nitrate
Nitrite.
Classification:
Groups: General function prediction only
Lipid transport and metabolism
Inorganic ion transport and metabolism
Posttranslational modification, protein turnover, chaperones
Transcription
Carbohydrate transport and metabolism
Energy production and conversion
Replication, recombination and repair
Signal transduction mechanisms
Amino acid transport and metabolism
Coenzyme transport and metabolism
Intracellular trafficking, secretion, and vesicular transport
Gene Ontology Terms (GO): biological_process GO:0042773 - ATP synthesis coupled electron transport
GO:0015740 - C4-dicarboxylate transport
GO:0006307 - DNA dealkylation involved in DNA repair
GO:0006281 - DNA repair
GO:0006777 - Mo-molybdopterin cofactor biosynthetic process
GO:0006084 - acetyl-CoA metabolic process
Read more >
cellular_component GO:0043190 - ATP-binding cassette (ABC) transporter complex
GO:0055052 - ATP-binding cassette (ABC) transporter complex, substrate-binding subunit-containing
GO:0009346 - ATP-independent citrate lyase complex
GO:0009276 - Gram-negative-bacterium-type cell wall
GO:0030964 - NADH dehydrogenase complex
GO:0044799 - NarGHI complex
GO:0044569 - [Ni-Fe] hydrogenase complex
Read more >
molecular_function GO:0051537 - 2 iron, 2 sulfur cluster binding
GO:0051538 - 3 iron, 4 sulfur cluster binding
GO:0051539 - 4 iron, 4 sulfur cluster binding
GO:0008412 - 4-hydroxybenzoate octaprenyltransferase activity
GO:0015439 - ABC-type heme transporter activity
GO:0015413 - ABC-type nickel transporter activity
GO:0005524 - ATP binding
Read more >
Components:
  Function Name Type
  simple_molecule (CH3)3NH simple_molecule
  simple_molecule 1-Alcohol simple_molecule
  simple_molecule 2-5-triphosphoribosyl-3-dephospho-CoA simple_molecule
  simple_molecule 2-oxobutyrate simple_molecule
  simple_molecule 3-dephospho-CoA simple_molecule
  simple_molecule 3-octaprenyl-4-hydroxybenzoate simple_molecule
  simple_molecule 4-hydroxybenzoate simple_molecule
  simple_molecule A(H2) simple_molecule
  protein AdhE protein
  protein AspA protein
  simple_molecule CO2 simple_molecule
  protein CaiF protein
  protein CcmA protein
  protein CcmB protein
  protein CcmC protein
  protein CcmD protein
  complex CcmD-CcmB-CcmA-CcmE-CcmC complex
  protein CcmE protein
  complex CcmE-CcmF-CcmG-CcmH complex
  protein CcmF protein
  protein CcmG protein
  protein CcmH protein
  protein CitC protein
  protein CitD protein
  complex CitD-CitF-CitE complex
  protein CitE protein
  protein CitF protein
  protein CitG protein
  protein CitX protein
  protein CydC protein
  protein CydD protein
  complex CydD-CydC complex
  protein CysG protein
  simple_molecule DMSO simple_molecule
  simple_molecule DNA 6-O-methylguanine simple_molecule
  simple_molecule DNA guanine simple_molecule
  protein DcuA protein
  protein DcuB protein
  protein DcuR protein
  protein DcuS protein
  protein DmsA protein
  complex DmsA-DmsB-DmsC complex
  protein DmsB protein
  protein DmsC protein
  protein DmsD protein
  protein DpiA protein
  protein DpiB protein
  simple_molecule EtOH simple_molecule
  protein FdhF protein
  complex FdhF-HycE-HycB-HycG-HycF-HycC-HycD complex
  protein FdnG protein
  protein FdnH protein
  protein FdnI protein
  complex FdnI-FdnH-FdnG complex
  simple_molecule Fe+2 simple_molecule
  simple_molecule FlRd simple_molecule
  protein FocA protein
  protein FrdA protein
  complex FrdA-FrdB-FrdC-FrdD complex
  protein FrdB protein
  protein FrdC protein
  protein FrdD protein
  protein FumB protein
  simple_molecule H2Dtpp-mADP simple_molecule
  protein Hcp protein
  protein Hcr protein
  protein HyaA protein
  complex HyaA-HyaB-HyaC complex
  protein HyaB protein
  protein HyaC protein
  protein HyaD protein
  protein HyaE protein
  protein HyaF protein
  protein HybA protein
  complex HybA-HybB-HybO-HybC complex
  protein HybB protein
  protein HybC protein
  protein HybD protein
  protein HybE protein
  protein HybF protein
  protein HybG protein
  protein HybO protein
  protein HycB protein
  protein HycC protein
  protein HycD protein
  protein HycE protein
  protein HycF protein
  protein HycG protein
  simple_molecule MPT-Synthase-small-subunits simple_molecule
  simple_molecule MoCo (dioxyo) simple_molecule
  protein MoeA protein
  protein MoeB protein
  simple_molecule NH2OH simple_molecule
  protein NapA protein
  protein NapB protein
  complex NapB-NapA complex
  protein NapC protein
  protein NapD protein
  protein NapF protein
  protein NapG protein
  complex NapG-NapH complex
  protein NapH protein
  protein NarG protein
  complex NarG-NarH-NarI complex
  protein NarH protein
  protein NarI protein
  protein NarJ protein
  protein NarK protein
  protein NarL protein
  complex NarL-phosphate complex
  protein NikA protein
  protein NikB protein
  protein NikC protein
  protein NikD protein
  complex NikD-NikE-NikB-NikC-NikA complex
  protein NikE protein
  protein NikR protein
  protein NirB protein
  protein NirC protein
  protein NirD protein
  complex NirD-NirB complex
  protein NorV protein
  protein NorW protein
  protein NrfA protein
  complex NrfA-NrfB complex
  protein NrfB protein
  protein NrfC protein
  protein NrfD protein
  complex NrfD-NrfC complex
  protein NrfE protein
  protein NrfF protein
  protein NrfG protein
  protein NuoA protein
  complex NuoA-NuoH-NuoJ-NuoK-NuoL-NuoM-NuoN-NuoI-NuoG-NuoF-NuoE-NuoC-NuoB complex
  protein NuoB protein
  complex NuoB-NuoC-NuoE-NuoF-NuoG-NuoI complex
  protein NuoC protein
  protein NuoE protein
  protein NuoF protein
  protein NuoG protein
  protein NuoH protein
  protein NuoI protein
  protein NuoJ protein
  protein NuoK protein
  protein NuoL protein
  protein NuoM protein
  protein NuoN protein
  protein Ogt protein
  protein OmpW protein
  simple_molecule Oxidized-NapC-proteins simple_molecule
  protein PflB protein
  protein PoxB protein
  simple_molecule Precorrin simple_molecule
  simple_molecule RCHO simple_molecule
  simple_molecule Reduced-NapC-proteins simple_molecule
  simple_molecule SAM simple_molecule
  simple_molecule TMAO simple_molecule
  simple_molecule Te0 simple_molecule
  simple_molecule TeO2 simple_molecule
  protein TorA protein
  protein TorC protein
  complex TorC-TorA complex
  protein TorD protein
  protein UbiA protein
  protein UbiC protein
  protein YdeP protein
  protein YdhT protein
  protein YdhU protein
  protein YdhV protein
  protein YdhW protein
  protein YdhX protein
  protein YdhY protein
  protein YeaR protein
  protein YjdH protein
  protein YnfE protein
  complex YnfE-YnfF-YnfG-YnfH complex
  protein YnfF protein
  protein YnfG protein
  protein YnfH protein
  protein YoaG protein
  protein YtfE protein
  simple_molecule [a citrate-lyase acyl-carrier protein] simple_molecule
  simple_molecule [a holo citrate lyase acyl-carrier protein] simple_molecule
  simple_molecule [protein]-S-methyl-L-cysteine simple_molecule
  simple_molecule a modified nucleobase within DNA simple_molecule
  simple_molecule a-reduced-NrfB-protein simple_molecule
  simple_molecule a-reduced-TorC-protein simple_molecule
  simple_molecule a-thymine-in-DNA simple_molecule
  simple_molecule acceptors simple_molecule
  simple_molecule acetate simple_molecule
  simple_molecule acetoin simple_molecule
  simple_molecule acetyl-CoA simple_molecule
  simple_molecule adenine simple_molecule
  simple_molecule adenosylhomocysteine simple_molecule
  gene adhE gene
  RNA adhE_mRNA RNA
  simple_molecule ammonium simple_molecule
  simple_molecule an-oxidized-NrfB-protein simple_molecule
  simple_molecule an-oxidized-TorC-protein simple_molecule
  gene aspA gene
  gene aspA-dcuA gene
  RNA aspA-dcuA_mRNA RNA
  RNA aspA_mRNA RNA
  simple_molecule aspartate simple_molecule
  simple_molecule aspartate_Ext simple_molecule
  gene caiF gene
  RNA caiF_mRNA RNA
  simple_molecule carboxy-adenylated small subunit of molybdopterin synthase simple_molecule
  simple_molecule chorismate simple_molecule
  gene citCDEFXG gene
  RNA citCDEFXG_mRNA RNA
  simple_molecule citrate lyase simple_molecule
  simple_molecule coenzyme A simple_molecule
  gene cydDC gene
  RNA cydDC_mRNA RNA
  simple_molecule cysteine simple_molecule
  simple_molecule cysteine_Ext simple_molecule
  gene dcuB-fumB gene
  RNA dcuB-fumB_mRNA RNA
  gene dcuSR gene
  RNA dcuSR_mRNA RNA
  simple_molecule dimethylsulfide simple_molecule
  simple_molecule diphosphate simple_molecule
  gene dmsABC gene
  RNA dmsABC_mRNA RNA
  gene dpiBA gene
  RNA dpiBA_mRNA RNA
  simple_molecule ethanal simple_molecule
  gene fdhF gene
  RNA fdhF_mRNA RNA
  gene fdnGHI gene
  RNA fdnGHI_mRNA RNA
  simple_molecule ferri c-type cytochrome simple_molecule
  gene focA-pflB gene
  RNA focA-pflB_mRNA RNA
  simple_molecule formate simple_molecule
  simple_molecule formate_Ext simple_molecule
  gene frdABCD gene
  RNA frdABCD_mRNA RNA
  simple_molecule fumarate simple_molecule
  simple_molecule fumarate_Ext simple_molecule
  simple_molecule glutathione simple_molecule
  simple_molecule glutathione_Ext simple_molecule
  gene hcp-hcr gene
  gene hcp-hcr-poxB gene
  RNA hcp-hcr-poxB_mRNA RNA
  RNA hcp-hcr_mRNA RNA
  gene hyaABCDEF gene
  RNA hyaABCDEF_mRNA RNA
  gene hybOABCDEFG gene
  RNA hybOABCDEFG_mRNA RNA
  simple_molecule hydrogen simple_molecule
  simple_molecule hydrogen_Ext simple_molecule
  simple_molecule malate simple_molecule
  simple_molecule malate_Ext simple_molecule
  simple_molecule menaquinol simple_molecule
  simple_molecule menaquinol_Ext simple_molecule
  gene moeAB gene
  RNA moeAB_mRNA RNA
  simple_molecule molybdate simple_molecule
  gene napFDAGHBC-ccmABCDEFGH gene
  RNA napFDAGHBC-ccmABCDEFGH_mRNA RNA
  gene narGHJI gene
  RNA narGHJI_mRNA RNA
  gene narK gene
  RNA narK_mRNA RNA
  simple_molecule nickel simple_molecule
  simple_molecule nickel_Ext simple_molecule
  gene nikABCDER gene
  RNA nikABCDER_mRNA RNA
  gene nirBDC-cysG gene
  RNA nirBDC-cysG_mRNA RNA
  simple_molecule nitrate simple_molecule
  simple_molecule nitrate_Ext simple_molecule
  simple_molecule nitrite simple_molecule
  simple_molecule nitrite_Ext simple_molecule
  gene norVW gene
  RNA norVW_mRNA RNA
  gene nrfABCDEFG gene
  RNA nrfABCDEFG_mRNA RNA
  gene nuoABCEFGHIJKLMN gene
  RNA nuoABCEFGHIJKLMN_mRNA RNA
  simple_molecule octaprenyl diphosphate simple_molecule
  gene ogt gene
  RNA ogt_mRNA RNA
  gene ompW gene
  RNA ompW_mRNA RNA
  simple_molecule oxalacetate simple_molecule
  simple_molecule oxidized flavorubredoxin simple_molecule
  simple_molecule oxidized hybrid-cluster protein simple_molecule
  simple_molecule oxidized hydrogenase 3 simple_molecule
  simple_molecule peptide cysteine simple_molecule
  simple_molecule phosphate simple_molecule
  simple_molecule precorrin-1 simple_molecule
  simple_molecule precorrin-2 simple_molecule
  simple_molecule propanoyl-CoA simple_molecule
  simple_molecule protoheme IX simple_molecule
  simple_molecule protoheme IX_Ext simple_molecule
  simple_molecule pyruvate simple_molecule
  simple_molecule pyruvate formate lyase, active form simple_molecule
  simple_molecule pyruvate formate-lyase simple_molecule
  simple_molecule reduced Cytochrome C protein simple_molecule
  simple_molecule reduced hybrid-cluster protein simple_molecule
  simple_molecule reduced hydrogenase 3 simple_molecule
  simple_molecule selenate simple_molecule
  simple_molecule selenite simple_molecule
  simple_molecule siroheme simple_molecule
  simple_molecule succinate simple_molecule
  simple_molecule succinate_Ext simple_molecule
  simple_molecule tartrate simple_molecule
  simple_molecule tartrate_Ext simple_molecule
  gene torCAD gene
  RNA torCAD_mRNA RNA
  gene ubiCA gene
  RNA ubiCA_mRNA RNA
  simple_molecule ubiquinol simple_molecule
  simple_molecule ubiquinol_Ext simple_molecule
  simple_molecule ubiquinone simple_molecule
  simple_molecule ubiquinone_Ext simple_molecule
  simple_molecule uroporphyrinogen-III simple_molecule
  simple_molecule vitamin K2 simple_molecule
  simple_molecule vitamin K2_Ext simple_molecule
  gene ydeP gene
  RNA ydeP_mRNA RNA
  gene ydhYVWXUT gene
  RNA ydhYVWXUT_mRNA RNA
  gene yeaR-yoaG gene
  RNA yeaR-yoaG_mRNA RNA
  gene ynfEFGH-dmsD gene
  RNA ynfEFGH-dmsD_mRNA RNA
  gene ytfE gene
  RNA ytfE_mRNA RNA


Reactions       
Showing 248 reactions
phosphate + NarL NarL-phosphate
Name: phosphate + NarL -> NarL-phosphate
Description: Reaction transforming phosphate, NarL into NarL-phosphate
Type: state transition
Pathway Components: phosphate + NarL -> NarL-phosphate
Components:
Function Name Type
reactant NarL protein
product NarL-phosphate complex
reactant phosphate simple_molecule
NarL-phosphate cydDC cydDC_mRNA
Name: cydDC -> cydDC_mRNA
Description: Transcription of transcription unit cydDC. Reaction activation by NarL-phosphate.
Type: transcription
Pathway Components: cydDC - NarL-phosphate -> cydDC_mRNA
Components:
Function Name Type
activator NarL-phosphate complex
reactant cydDC gene
product cydDC_mRNA RNA
NarL-phosphate fdnGHI fdnGHI_mRNA
Name: fdnGHI -> fdnGHI_mRNA
Description: Transcription of transcription unit fdnGHI. Reaction activation by NarL-phosphate.
Type: transcription
Pathway Components: fdnGHI - NarL-phosphate -> fdnGHI_mRNA
Components:
Function Name Type
activator NarL-phosphate complex
reactant fdnGHI gene
product fdnGHI_mRNA RNA
NarL-phosphate hcp-hcr hcp-hcr_mRNA
Name: hcp-hcr -> hcp-hcr_mRNA
Description: Transcription of transcription unit hcp-hcr. Reaction activation by NarL-phosphate.
Type: transcription
Pathway Components: hcp-hcr - NarL-phosphate -> hcp-hcr_mRNA
Components:
Function Name Type
activator NarL-phosphate complex
reactant hcp-hcr gene
product hcp-hcr_mRNA RNA
NarL-phosphate hcp-hcr-poxB hcp-hcr-poxB_mRNA
Name: hcp-hcr-poxB -> hcp-hcr-poxB_mRNA
Description: Transcription of transcription unit hcp-hcr-poxB. Reaction activation by NarL-phosphate.
Type: transcription
Pathway Components: hcp-hcr-poxB - NarL-phosphate -> hcp-hcr-poxB_mRNA
Components:
Function Name Type
activator NarL-phosphate complex
reactant hcp-hcr-poxB gene
product hcp-hcr-poxB_mRNA RNA
NarL-phosphate moeAB moeAB_mRNA
Name: moeAB -> moeAB_mRNA
Description: Transcription of transcription unit moeAB. Reaction activation by NarL-phosphate.
Type: transcription
Pathway Components: moeAB - NarL-phosphate -> moeAB_mRNA
Components:
Function Name Type
activator NarL-phosphate complex
reactant moeAB gene
product moeAB_mRNA RNA
NarL-phosphate narGHJI narGHJI_mRNA
Name: narGHJI -> narGHJI_mRNA
Description: Transcription of transcription unit narGHJI. Reaction activation by NarL-phosphate.
Type: transcription
Pathway Components: narGHJI - NarL-phosphate -> narGHJI_mRNA
Components:
Function Name Type
activator NarL-phosphate complex
reactant narGHJI gene
product narGHJI_mRNA RNA
NarL-phosphate narK narK_mRNA
Name: narK -> narK_mRNA
Description: Transcription of transcription unit narK. Reaction activation by NarL-phosphate.
Type: transcription
Pathway Components: narK - NarL-phosphate -> narK_mRNA
Components:
Function Name Type
activator NarL-phosphate complex
reactant narK gene
product narK_mRNA RNA
NarL-phosphate nirBDC-cysG nirBDC-cysG_mRNA
Name: nirBDC-cysG -> nirBDC-cysG_mRNA
Description: Transcription of transcription unit nirBDC-cysG. Reaction activation by NarL-phosphate.
Type: transcription
Pathway Components: nirBDC-cysG - NarL-phosphate -> nirBDC-cysG_mRNA
Components:
Function Name Type
activator NarL-phosphate complex
reactant nirBDC-cysG gene
product nirBDC-cysG_mRNA RNA
NarL-phosphate NarL-phosphate nrfABCDEFG nrfABCDEFG_mRNA
Name: nrfABCDEFG -> nrfABCDEFG_mRNA
Description: Transcription of transcription unit nrfABCDEFG. Reaction activation by NarL-phosphate. Reaction inhibition by NarL-phosphate.
Type: transcription
Pathway Components: nrfABCDEFG - NarL-phosphate - NarL-phosphate -> nrfABCDEFG_mRNA
Components:
Function Name Type
activator NarL-phosphate complex
inhibitor NarL-phosphate complex
reactant nrfABCDEFG gene
product nrfABCDEFG_mRNA RNA
NarL-phosphate nuoABCEFGHIJKLMN nuoABCEFGHIJKLMN_mRNA
Name: nuoABCEFGHIJKLMN -> nuoABCEFGHIJKLMN_mRNA
Description: Transcription of transcription unit nuoABCEFGHIJKLMN. Reaction activation by NarL-phosphate.
Type: transcription
Pathway Components: nuoABCEFGHIJKLMN - NarL-phosphate -> nuoABCEFGHIJKLMN_mRNA
Components:
Function Name Type
activator NarL-phosphate complex
reactant nuoABCEFGHIJKLMN gene
product nuoABCEFGHIJKLMN_mRNA RNA
NarL-phosphate ogt ogt_mRNA
Name: ogt -> ogt_mRNA
Description: Transcription of transcription unit ogt. Reaction activation by NarL-phosphate.
Type: transcription
Pathway Components: ogt - NarL-phosphate -> ogt_mRNA
Components:
Function Name Type
activator NarL-phosphate complex
reactant ogt gene
product ogt_mRNA RNA
NarL-phosphate ydeP ydeP_mRNA
Name: ydeP -> ydeP_mRNA
Description: Transcription of transcription unit ydeP. Reaction activation by NarL-phosphate.
Type: transcription
Pathway Components: ydeP - NarL-phosphate -> ydeP_mRNA
Components:
Function Name Type
activator NarL-phosphate complex
reactant ydeP gene
product ydeP_mRNA RNA
NarL-phosphate yeaR-yoaG yeaR-yoaG_mRNA
Name: yeaR-yoaG -> yeaR-yoaG_mRNA
Description: Transcription of transcription unit yeaR-yoaG. Reaction activation by NarL-phosphate.
Type: transcription
Pathway Components: yeaR-yoaG - NarL-phosphate -> yeaR-yoaG_mRNA
Components:
Function Name Type
activator NarL-phosphate complex
reactant yeaR-yoaG gene
product yeaR-yoaG_mRNA RNA
NarL-phosphate ytfE ytfE_mRNA
Name: ytfE -> ytfE_mRNA
Description: Transcription of transcription unit ytfE. Reaction activation by NarL-phosphate.
Type: transcription
Pathway Components: ytfE - NarL-phosphate -> ytfE_mRNA
Components:
Function Name Type
activator NarL-phosphate complex
reactant ytfE gene
product ytfE_mRNA RNA
NarL-phosphate adhE adhE_mRNA
Name: adhE -> adhE_mRNA
Description: Transcription of transcription unit adhE. Reaction inhibition by NarL-phosphate.
Type: transcription
Pathway Components: adhE - NarL-phosphate -> adhE_mRNA
Components:
Function Name Type
inhibitor NarL-phosphate complex
reactant adhE gene
product adhE_mRNA RNA
NarL-phosphate aspA aspA_mRNA
Name: aspA -> aspA_mRNA
Description: Transcription of transcription unit aspA. Reaction inhibition by NarL-phosphate.
Type: transcription
Pathway Components: aspA - NarL-phosphate -> aspA_mRNA
Components:
Function Name Type
inhibitor NarL-phosphate complex
reactant aspA gene
product aspA_mRNA RNA
NarL-phosphate aspA-dcuA aspA-dcuA_mRNA
Name: aspA-dcuA -> aspA-dcuA_mRNA
Description: Transcription of transcription unit aspA-dcuA. Reaction inhibition by NarL-phosphate.
Type: transcription
Pathway Components: aspA-dcuA - NarL-phosphate -> aspA-dcuA_mRNA
Components:
Function Name Type
inhibitor NarL-phosphate complex
reactant aspA-dcuA gene
product aspA-dcuA_mRNA RNA
NarL-phosphate caiF caiF_mRNA
Name: caiF -> caiF_mRNA
Description: Transcription of transcription unit caiF. Reaction inhibition by NarL-phosphate.
Type: transcription
Pathway Components: caiF - NarL-phosphate -> caiF_mRNA
Components:
Function Name Type
inhibitor NarL-phosphate complex
reactant caiF gene
product caiF_mRNA RNA
NarL-phosphate citCDEFXG citCDEFXG_mRNA
Name: citCDEFXG -> citCDEFXG_mRNA
Description: Transcription of transcription unit citCDEFXG. Reaction inhibition by NarL-phosphate.
Type: transcription
Pathway Components: citCDEFXG - NarL-phosphate -> citCDEFXG_mRNA
Components:
Function Name Type
inhibitor NarL-phosphate complex
reactant citCDEFXG gene
product citCDEFXG_mRNA RNA
NarL-phosphate dcuB-fumB dcuB-fumB_mRNA
Name: dcuB-fumB -> dcuB-fumB_mRNA
Description: Transcription of transcription unit dcuB-fumB. Reaction inhibition by NarL-phosphate.
Type: transcription
Pathway Components: dcuB-fumB - NarL-phosphate -> dcuB-fumB_mRNA
Components:
Function Name Type
inhibitor NarL-phosphate complex
reactant dcuB-fumB gene
product dcuB-fumB_mRNA RNA
NarL-phosphate dcuSR dcuSR_mRNA
Name: dcuSR -> dcuSR_mRNA
Description: Transcription of transcription unit dcuSR. Reaction inhibition by NarL-phosphate.
Type: transcription
Pathway Components: dcuSR - NarL-phosphate -> dcuSR_mRNA
Components:
Function Name Type
inhibitor NarL-phosphate complex
reactant dcuSR gene
product dcuSR_mRNA RNA
NarL-phosphate dmsABC dmsABC_mRNA
Name: dmsABC -> dmsABC_mRNA
Description: Transcription of transcription unit dmsABC. Reaction inhibition by NarL-phosphate.
Type: transcription
Pathway Components: dmsABC - NarL-phosphate -> dmsABC_mRNA
Components:
Function Name Type
inhibitor NarL-phosphate complex
reactant dmsABC gene
product dmsABC_mRNA RNA
NarL-phosphate dpiBA dpiBA_mRNA
Name: dpiBA -> dpiBA_mRNA
Description: Transcription of transcription unit dpiBA. Reaction inhibition by NarL-phosphate.
Type: transcription
Pathway Components: dpiBA - NarL-phosphate -> dpiBA_mRNA
Components:
Function Name Type
inhibitor NarL-phosphate complex
reactant dpiBA gene
product dpiBA_mRNA RNA
NarL-phosphate fdhF fdhF_mRNA
Name: fdhF -> fdhF_mRNA
Description: Transcription of transcription unit fdhF. Reaction inhibition by NarL-phosphate.
Type: transcription
Pathway Components: fdhF - NarL-phosphate -> fdhF_mRNA
Components:
Function Name Type
inhibitor NarL-phosphate complex
reactant fdhF gene
product fdhF_mRNA RNA
NarL-phosphate focA-pflB focA-pflB_mRNA
Name: focA-pflB -> focA-pflB_mRNA
Description: Transcription of transcription unit focA-pflB. Reaction inhibition by NarL-phosphate.
Type: transcription
Pathway Components: focA-pflB - NarL-phosphate -> focA-pflB_mRNA
Components:
Function Name Type
inhibitor NarL-phosphate complex
reactant focA-pflB gene
product focA-pflB_mRNA RNA
NarL-phosphate frdABCD frdABCD_mRNA
Name: frdABCD -> frdABCD_mRNA
Description: Transcription of transcription unit frdABCD. Reaction inhibition by NarL-phosphate.
Type: transcription
Pathway Components: frdABCD - NarL-phosphate -> frdABCD_mRNA
Components:
Function Name Type
inhibitor NarL-phosphate complex
reactant frdABCD gene
product frdABCD_mRNA RNA
NarL-phosphate hyaABCDEF hyaABCDEF_mRNA
Name: hyaABCDEF -> hyaABCDEF_mRNA
Description: Transcription of transcription unit hyaABCDEF. Reaction inhibition by NarL-phosphate.
Type: transcription
Pathway Components: hyaABCDEF - NarL-phosphate -> hyaABCDEF_mRNA
Components:
Function Name Type
inhibitor NarL-phosphate complex
reactant hyaABCDEF gene
product hyaABCDEF_mRNA RNA
NarL-phosphate hybOABCDEFG hybOABCDEFG_mRNA
Name: hybOABCDEFG -> hybOABCDEFG_mRNA
Description: Transcription of transcription unit hybOABCDEFG. Reaction inhibition by NarL-phosphate.
Type: transcription
Pathway Components: hybOABCDEFG - NarL-phosphate -> hybOABCDEFG_mRNA
Components:
Function Name Type
inhibitor NarL-phosphate complex
reactant hybOABCDEFG gene
product hybOABCDEFG_mRNA RNA
NarL-phosphate napFDAGHBC-ccmABCDEFGH napFDAGHBC-ccmABCDEFGH_mRNA
Name: napFDAGHBC-ccmABCDEFGH -> napFDAGHBC-ccmABCDEFGH_mRNA
Description: Transcription of transcription unit napFDAGHBC-ccmABCDEFGH. Reaction inhibition by NarL-phosphate.
Type: transcription
Pathway Components: napFDAGHBC-ccmABCDEFGH - NarL-phosphate -> napFDAGHBC-ccmABCDEFGH_mRNA
Components:
Function Name Type
inhibitor NarL-phosphate complex
reactant napFDAGHBC-ccmABCDEFGH gene
product napFDAGHBC-ccmABCDEFGH_mRNA RNA
NarL-phosphate nikABCDER nikABCDER_mRNA
Name: nikABCDER -> nikABCDER_mRNA
Description: Transcription of transcription unit nikABCDER. Reaction inhibition by NarL-phosphate.
Type: transcription
Pathway Components: nikABCDER - NarL-phosphate -> nikABCDER_mRNA
Components:
Function Name Type
inhibitor NarL-phosphate complex
reactant nikABCDER gene
product nikABCDER_mRNA RNA
NarL-phosphate norVW norVW_mRNA
Name: norVW -> norVW_mRNA
Description: Transcription of transcription unit norVW. Reaction inhibition by NarL-phosphate.
Type: transcription
Pathway Components: norVW - NarL-phosphate -> norVW_mRNA
Components:
Function Name Type
inhibitor NarL-phosphate complex
reactant norVW gene
product norVW_mRNA RNA
NarL-phosphate ompW ompW_mRNA
Name: ompW -> ompW_mRNA
Description: Transcription of transcription unit ompW. Reaction inhibition by NarL-phosphate.
Type: transcription
Pathway Components: ompW - NarL-phosphate -> ompW_mRNA
Components:
Function Name Type
inhibitor NarL-phosphate complex
reactant ompW gene
product ompW_mRNA RNA
NarL-phosphate torCAD torCAD_mRNA
Name: torCAD -> torCAD_mRNA
Description: Transcription of transcription unit torCAD. Reaction inhibition by NarL-phosphate.
Type: transcription
Pathway Components: torCAD - NarL-phosphate -> torCAD_mRNA
Components:
Function Name Type
inhibitor NarL-phosphate complex
reactant torCAD gene
product torCAD_mRNA RNA
NarL-phosphate ubiCA ubiCA_mRNA
Name: ubiCA -> ubiCA_mRNA
Description: Transcription of transcription unit ubiCA. Reaction inhibition by NarL-phosphate.
Type: transcription
Pathway Components: ubiCA - NarL-phosphate -> ubiCA_mRNA
Components:
Function Name Type
inhibitor NarL-phosphate complex
reactant ubiCA gene
product ubiCA_mRNA RNA
NarL-phosphate ydhYVWXUT ydhYVWXUT_mRNA
Name: ydhYVWXUT -> ydhYVWXUT_mRNA
Description: Transcription of transcription unit ydhYVWXUT. Reaction inhibition by NarL-phosphate.
Type: transcription
Pathway Components: ydhYVWXUT - NarL-phosphate -> ydhYVWXUT_mRNA
Components:
Function Name Type
inhibitor NarL-phosphate complex
reactant ydhYVWXUT gene
product ydhYVWXUT_mRNA RNA
NarL-phosphate ynfEFGH-dmsD ynfEFGH-dmsD_mRNA
Name: ynfEFGH-dmsD -> ynfEFGH-dmsD_mRNA
Description: Transcription of transcription unit ynfEFGH-dmsD. Reaction inhibition by NarL-phosphate.
Type: transcription
Pathway Components: ynfEFGH-dmsD - NarL-phosphate -> ynfEFGH-dmsD_mRNA
Components:
Function Name Type
inhibitor NarL-phosphate complex
reactant ynfEFGH-dmsD gene
product ynfEFGH-dmsD_mRNA RNA
focA-pflB_mRNA FocA
Name: focA-pflB_mRNA -> FocA
Description: Translation of FocA
Type: translation
Pathway Components: focA-pflB_mRNA -> FocA
Components:
Function Name Type
product FocA protein
reactant focA-pflB_mRNA RNA
FocA formate_Ext formate
Name: formate_Ext -> formate
Description: Transport of formate_Ext through a bacterial membrane, leading to the presence of formate inside the cell.
Type: transport
Pathway Components: formate_Ext - FocA -> formate
Components:
Function Name Type
catalyzer FocA protein
product formate simple_molecule
reactant formate_Ext simple_molecule
focA-pflB_mRNA PflB
Name: focA-pflB_mRNA -> PflB
Description: Translation of PflB
Type: translation
Pathway Components: focA-pflB_mRNA -> PflB
Components:
Function Name Type
product PflB protein
reactant focA-pflB_mRNA RNA
PflB coenzyme A + pyruvate acetyl-CoA + formate
Name: coenzyme A + pyruvate -> acetyl-CoA + formate
Description: Reaction transforming coenzyme A, pyruvate into acetyl-CoA, formate
Type: state transition
Pathway Components: coenzyme A + pyruvate - PflB -> acetyl-CoA + formate
Components:
Function Name Type
catalyzer PflB protein
product acetyl-CoA simple_molecule
reactant coenzyme A simple_molecule
product formate simple_molecule
reactant pyruvate simple_molecule
PflB 2-oxobutyrate + coenzyme A propanoyl-CoA + formate
Name: 2-oxobutyrate + coenzyme A -> propanoyl-CoA + formate
Description: Reaction transforming 2-oxobutyrate, coenzyme A into propanoyl-CoA, formate
Type: state transition
Pathway Components: 2-oxobutyrate + coenzyme A - PflB -> propanoyl-CoA + formate
Components:
Function Name Type
reactant 2-oxobutyrate simple_molecule
catalyzer PflB protein
reactant coenzyme A simple_molecule
product formate simple_molecule
product propanoyl-CoA simple_molecule
nikABCDER_mRNA NikA
Name: nikABCDER_mRNA -> NikA
Description: Translation of NikA
Type: translation
Pathway Components: nikABCDER_mRNA -> NikA
Components:
Function Name Type
product NikA protein
reactant nikABCDER_mRNA RNA
NikA + NikD + NikB + NikE + NikC NikD-NikE-NikB-NikC-NikA
Name: NikA + NikD + NikB + NikE + NikC -> NikD-NikE-NikB-NikC-NikA
Description: Reaction transforming NikA, NikD, NikB, NikE, NikC into NikD-NikE-NikB-NikC-NikA
Type: state transition
Pathway Components: NikA + NikD + NikB + NikE + NikC -> NikD-NikE-NikB-NikC-NikA
Components:
Function Name Type
reactant NikA protein
reactant NikB protein
reactant NikC protein
reactant NikD protein
product NikD-NikE-NikB-NikC-NikA complex
reactant NikE protein
NikD-NikE-NikB-NikC-NikA nickel_Ext nickel
Name: nickel_Ext -> nickel
Description: Transport of nickel_Ext through a bacterial membrane, leading to the presence of nickel inside the cell.
Type: transport
Pathway Components: nickel_Ext - NikD-NikE-NikB-NikC-NikA -> nickel
Components:
Function Name Type
catalyzer NikD-NikE-NikB-NikC-NikA complex
product nickel simple_molecule
reactant nickel_Ext simple_molecule
nikABCDER_mRNA NikB
Name: nikABCDER_mRNA -> NikB
Description: Translation of NikB
Type: translation
Pathway Components: nikABCDER_mRNA -> NikB
Components:
Function Name Type
product NikB protein
reactant nikABCDER_mRNA RNA
nikABCDER_mRNA NikC
Name: nikABCDER_mRNA -> NikC
Description: Translation of NikC
Type: translation
Pathway Components: nikABCDER_mRNA -> NikC
Components:
Function Name Type
product NikC protein
reactant nikABCDER_mRNA RNA
nikABCDER_mRNA NikD
Name: nikABCDER_mRNA -> NikD
Description: Translation of NikD
Type: translation
Pathway Components: nikABCDER_mRNA -> NikD
Components:
Function Name Type
product NikD protein
reactant nikABCDER_mRNA RNA
nikABCDER_mRNA NikE
Name: nikABCDER_mRNA -> NikE
Description: Translation of NikE
Type: translation
Pathway Components: nikABCDER_mRNA -> NikE
Components:
Function Name Type
product NikE protein
reactant nikABCDER_mRNA RNA
nikABCDER_mRNA NikR
Name: nikABCDER_mRNA -> NikR
Description: Translation of NikR
Type: translation
Pathway Components: nikABCDER_mRNA -> NikR
Components:
Function Name Type
product NikR protein
reactant nikABCDER_mRNA RNA
ydeP_mRNA YdeP
Name: ydeP_mRNA -> YdeP
Description: Translation of YdeP
Type: translation
Pathway Components: ydeP_mRNA -> YdeP
Components:
Function Name Type
product YdeP protein
reactant ydeP_mRNA RNA
nuoABCEFGHIJKLMN_mRNA NuoA
Name: nuoABCEFGHIJKLMN_mRNA -> NuoA
Description: Translation of NuoA
Type: translation
Pathway Components: nuoABCEFGHIJKLMN_mRNA -> NuoA
Components:
Function Name Type
product NuoA protein
reactant nuoABCEFGHIJKLMN_mRNA RNA
Protein Monomers Protein complex
Name: NuoL + NuoN + NuoF + NuoE + NuoK + NuoJ + NuoC + NuoA + NuoH + NuoB + NuoI + NuoM + NuoG -> NuoA-NuoH-NuoJ-NuoK-NuoL-NuoM-NuoN-NuoI-NuoG-NuoF-NuoE-NuoC-NuoB
Description: Reaction transforming NuoL, NuoN, NuoF, NuoE, NuoK, NuoJ, NuoC, NuoA, NuoH, NuoB, NuoI, NuoM, NuoG into NuoA-NuoH-NuoJ-NuoK-NuoL-NuoM-NuoN-NuoI-NuoG-NuoF-NuoE-NuoC-NuoB
Type: state transition
Pathway Components: NuoL + NuoN + NuoF + NuoE + NuoK + NuoJ + NuoC + NuoA + NuoH + NuoB + NuoI + NuoM + NuoG -> NuoA-NuoH-NuoJ-NuoK-NuoL-NuoM-NuoN-NuoI-NuoG-NuoF-NuoE-NuoC-NuoB
Components: Show/Hide Components Table
Catalyzer ubiquinone_Ext ubiquinol
Name: ubiquinone_Ext -> ubiquinol
Description: Transport of ubiquinone_Ext through a bacterial membrane, leading to the presence of ubiquinol inside the cell.
Type: transport
Pathway Components: ubiquinone_Ext - NuoA-NuoH-NuoJ-NuoK-NuoL-NuoM-NuoN-NuoI-NuoG-NuoF-NuoE-NuoC-NuoB -> ubiquinol
Components:
Function Name Type
catalyzer NuoA-NuoH-NuoJ-NuoK-NuoL-NuoM-NuoN-NuoI-NuoG-NuoF-NuoE-NuoC-NuoB complex
product ubiquinol simple_molecule
reactant ubiquinone_Ext simple_molecule
Catalyzer vitamin K2_Ext menaquinol
Name: vitamin K2_Ext -> menaquinol
Description: Transport of vitamin K2_Ext through a bacterial membrane, leading to the presence of menaquinol inside the cell.
Type: transport
Pathway Components: vitamin K2_Ext - NuoA-NuoH-NuoJ-NuoK-NuoL-NuoM-NuoN-NuoI-NuoG-NuoF-NuoE-NuoC-NuoB -> menaquinol
Components:
Function Name Type
catalyzer NuoA-NuoH-NuoJ-NuoK-NuoL-NuoM-NuoN-NuoI-NuoG-NuoF-NuoE-NuoC-NuoB complex
product menaquinol simple_molecule
reactant vitamin K2_Ext simple_molecule
nuoABCEFGHIJKLMN_mRNA NuoB
Name: nuoABCEFGHIJKLMN_mRNA -> NuoB
Description: Translation of NuoB
Type: translation
Pathway Components: nuoABCEFGHIJKLMN_mRNA -> NuoB
Components:
Function Name Type
product NuoB protein
reactant nuoABCEFGHIJKLMN_mRNA RNA
NuoI + NuoB + NuoF + NuoE + NuoC + NuoG NuoB-NuoC-NuoE-NuoF-NuoG-NuoI
Name: NuoI + NuoB + NuoF + NuoE + NuoC + NuoG -> NuoB-NuoC-NuoE-NuoF-NuoG-NuoI
Description: Reaction transforming NuoI, NuoB, NuoF, NuoE, NuoC, NuoG into NuoB-NuoC-NuoE-NuoF-NuoG-NuoI
Type: state transition
Pathway Components: NuoI + NuoB + NuoF + NuoE + NuoC + NuoG -> NuoB-NuoC-NuoE-NuoF-NuoG-NuoI
Components:
Function Name Type
reactant NuoB protein
product NuoB-NuoC-NuoE-NuoF-NuoG-NuoI complex
reactant NuoC protein
reactant NuoE protein
reactant NuoF protein
reactant NuoG protein
reactant NuoI protein
nuoABCEFGHIJKLMN_mRNA NuoC
Name: nuoABCEFGHIJKLMN_mRNA -> NuoC
Description: Translation of NuoC
Type: translation
Pathway Components: nuoABCEFGHIJKLMN_mRNA -> NuoC
Components:
Function Name Type
product NuoC protein
reactant nuoABCEFGHIJKLMN_mRNA RNA
nuoABCEFGHIJKLMN_mRNA NuoE
Name: nuoABCEFGHIJKLMN_mRNA -> NuoE
Description: Translation of NuoE
Type: translation
Pathway Components: nuoABCEFGHIJKLMN_mRNA -> NuoE
Components:
Function Name Type
product NuoE protein
reactant nuoABCEFGHIJKLMN_mRNA RNA
nuoABCEFGHIJKLMN_mRNA NuoF
Name: nuoABCEFGHIJKLMN_mRNA -> NuoF
Description: Translation of NuoF
Type: translation
Pathway Components: nuoABCEFGHIJKLMN_mRNA -> NuoF
Components:
Function Name Type
product NuoF protein
reactant nuoABCEFGHIJKLMN_mRNA RNA
nuoABCEFGHIJKLMN_mRNA NuoG
Name: nuoABCEFGHIJKLMN_mRNA -> NuoG
Description: Translation of NuoG
Type: translation
Pathway Components: nuoABCEFGHIJKLMN_mRNA -> NuoG
Components:
Function Name Type
product NuoG protein
reactant nuoABCEFGHIJKLMN_mRNA RNA
nuoABCEFGHIJKLMN_mRNA NuoH
Name: nuoABCEFGHIJKLMN_mRNA -> NuoH
Description: Translation of NuoH
Type: translation
Pathway Components: nuoABCEFGHIJKLMN_mRNA -> NuoH
Components:
Function Name Type
product NuoH protein
reactant nuoABCEFGHIJKLMN_mRNA RNA
nuoABCEFGHIJKLMN_mRNA NuoI
Name: nuoABCEFGHIJKLMN_mRNA -> NuoI
Description: Translation of NuoI
Type: translation
Pathway Components: nuoABCEFGHIJKLMN_mRNA -> NuoI
Components:
Function Name Type
product NuoI protein
reactant nuoABCEFGHIJKLMN_mRNA RNA
nuoABCEFGHIJKLMN_mRNA NuoJ
Name: nuoABCEFGHIJKLMN_mRNA -> NuoJ
Description: Translation of NuoJ
Type: translation
Pathway Components: nuoABCEFGHIJKLMN_mRNA -> NuoJ
Components:
Function Name Type
product NuoJ protein
reactant nuoABCEFGHIJKLMN_mRNA RNA
nuoABCEFGHIJKLMN_mRNA NuoK
Name: nuoABCEFGHIJKLMN_mRNA -> NuoK
Description: Translation of NuoK
Type: translation
Pathway Components: nuoABCEFGHIJKLMN_mRNA -> NuoK
Components:
Function Name Type
product NuoK protein
reactant nuoABCEFGHIJKLMN_mRNA RNA
nuoABCEFGHIJKLMN_mRNA NuoL
Name: nuoABCEFGHIJKLMN_mRNA -> NuoL
Description: Translation of NuoL
Type: translation
Pathway Components: nuoABCEFGHIJKLMN_mRNA -> NuoL
Components:
Function Name Type
product NuoL protein
reactant nuoABCEFGHIJKLMN_mRNA RNA
nuoABCEFGHIJKLMN_mRNA NuoM
Name: nuoABCEFGHIJKLMN_mRNA -> NuoM
Description: Translation of NuoM
Type: translation
Pathway Components: nuoABCEFGHIJKLMN_mRNA -> NuoM
Components:
Function Name Type
product NuoM protein
reactant nuoABCEFGHIJKLMN_mRNA RNA
nuoABCEFGHIJKLMN_mRNA NuoN
Name: nuoABCEFGHIJKLMN_mRNA -> NuoN
Description: Translation of NuoN
Type: translation
Pathway Components: nuoABCEFGHIJKLMN_mRNA -> NuoN
Components:
Function Name Type
product NuoN protein
reactant nuoABCEFGHIJKLMN_mRNA RNA
ogt_mRNA Ogt
Name: ogt_mRNA -> Ogt
Description: Translation of Ogt
Type: translation
Pathway Components: ogt_mRNA -> Ogt
Components:
Function Name Type
product Ogt protein
reactant ogt_mRNA RNA
Ogt Reactants [protein]-S-methyl-L-cysteine + a-thymine-in-DNA
Name: a modified nucleobase within DNA + peptide cysteine -> [protein]-S-methyl-L-cysteine + a-thymine-in-DNA
Description: Reaction transforming a modified nucleobase within DNA, peptide cysteine into [protein]-S-methyl-L-cysteine, a-thymine-in-DNA
Type: state transition
Pathway Components: a modified nucleobase within DNA + peptide cysteine - Ogt -> [protein]-S-methyl-L-cysteine + a-thymine-in-DNA
Components:
Function Name Type
catalyzer Ogt protein
product [protein]-S-methyl-L-cysteine simple_molecule
reactant a modified nucleobase within DNA simple_molecule
product a-thymine-in-DNA simple_molecule
reactant peptide cysteine simple_molecule
Ogt DNA 6-O-methylguanine + peptide cysteine [protein]-S-methyl-L-cysteine + DNA guanine
Name: DNA 6-O-methylguanine + peptide cysteine -> [protein]-S-methyl-L-cysteine + DNA guanine
Description: Reaction transforming DNA 6-O-methylguanine, peptide cysteine into [protein]-S-methyl-L-cysteine, DNA guanine
Type: state transition
Pathway Components: DNA 6-O-methylguanine + peptide cysteine - Ogt -> [protein]-S-methyl-L-cysteine + DNA guanine
Components:
Function Name Type
reactant DNA 6-O-methylguanine simple_molecule
product DNA guanine simple_molecule
catalyzer Ogt protein
product [protein]-S-methyl-L-cysteine simple_molecule
reactant peptide cysteine simple_molecule
ompW_mRNA OmpW
Name: ompW_mRNA -> OmpW
Description: Translation of OmpW
Type: translation
Pathway Components: ompW_mRNA -> OmpW
Components:
Function Name Type
product OmpW protein
reactant ompW_mRNA RNA
hybOABCDEFG_mRNA HybO
Name: hybOABCDEFG_mRNA -> HybO
Description: Translation of HybO
Type: translation
Pathway Components: hybOABCDEFG_mRNA -> HybO
Components:
Function Name Type
product HybO protein
reactant hybOABCDEFG_mRNA RNA
HybO + HybA + HybC + HybB HybA-HybB-HybO-HybC
Name: HybO + HybA + HybC + HybB -> HybA-HybB-HybO-HybC
Description: Reaction transforming HybO, HybA, HybC, HybB into HybA-HybB-HybO-HybC
Type: state transition
Pathway Components: HybO + HybA + HybC + HybB -> HybA-HybB-HybO-HybC
Components:
Function Name Type
reactant HybA protein
product HybA-HybB-HybO-HybC complex
reactant HybB protein
reactant HybC protein
reactant HybO protein
HybA-HybB-HybO-HybC vitamin K2_Ext + hydrogen_Ext menaquinol
Name: vitamin K2_Ext + hydrogen_Ext -> menaquinol
Description: Transport of vitamin K2_Ext, hydrogen_Ext through a bacterial membrane, leading to the presence of menaquinol inside the cell.
Type: transport
Pathway Components: vitamin K2_Ext + hydrogen_Ext - HybA-HybB-HybO-HybC -> menaquinol
Components:
Function Name Type
catalyzer HybA-HybB-HybO-HybC complex
reactant hydrogen_Ext simple_molecule
product menaquinol simple_molecule
reactant vitamin K2_Ext simple_molecule
hybOABCDEFG_mRNA HybA
Name: hybOABCDEFG_mRNA -> HybA
Description: Translation of HybA
Type: translation
Pathway Components: hybOABCDEFG_mRNA -> HybA
Components:
Function Name Type
product HybA protein
reactant hybOABCDEFG_mRNA RNA
hybOABCDEFG_mRNA HybB
Name: hybOABCDEFG_mRNA -> HybB
Description: Translation of HybB
Type: translation
Pathway Components: hybOABCDEFG_mRNA -> HybB
Components:
Function Name Type
product HybB protein
reactant hybOABCDEFG_mRNA RNA
hybOABCDEFG_mRNA HybC
Name: hybOABCDEFG_mRNA -> HybC
Description: Translation of HybC
Type: translation
Pathway Components: hybOABCDEFG_mRNA -> HybC
Components:
Function Name Type
product HybC protein
reactant hybOABCDEFG_mRNA RNA
hybOABCDEFG_mRNA HybD
Name: hybOABCDEFG_mRNA -> HybD
Description: Translation of HybD
Type: translation
Pathway Components: hybOABCDEFG_mRNA -> HybD
Components:
Function Name Type
product HybD protein
reactant hybOABCDEFG_mRNA RNA
hybOABCDEFG_mRNA HybE
Name: hybOABCDEFG_mRNA -> HybE
Description: Translation of HybE
Type: translation
Pathway Components: hybOABCDEFG_mRNA -> HybE
Components:
Function Name Type
product HybE protein
reactant hybOABCDEFG_mRNA RNA
hybOABCDEFG_mRNA HybF
Name: hybOABCDEFG_mRNA -> HybF
Description: Translation of HybF
Type: translation
Pathway Components: hybOABCDEFG_mRNA -> HybF
Components:
Function Name Type
product HybF protein
reactant hybOABCDEFG_mRNA RNA
hybOABCDEFG_mRNA HybG
Name: hybOABCDEFG_mRNA -> HybG
Description: Translation of HybG
Type: translation
Pathway Components: hybOABCDEFG_mRNA -> HybG
Components:
Function Name Type
product HybG protein
reactant hybOABCDEFG_mRNA RNA
aspA-dcuA_mRNA AspA
Name: aspA-dcuA_mRNA -> AspA
Description: Translation of AspA
Type: translation
Pathway Components: aspA-dcuA_mRNA -> AspA
Components:
Function Name Type
product AspA protein
reactant aspA-dcuA_mRNA RNA
AspA aspartate aspartate ammonium + fumarate
Name: aspartate -> ammonium + fumarate
Description: Reaction transforming aspartate into ammonium, fumarate
Type: state transition
Pathway Components: aspartate - AspA - aspartate -> ammonium + fumarate
Components:
Function Name Type
catalyzer AspA protein
product ammonium simple_molecule
inhibitor aspartate simple_molecule
reactant aspartate simple_molecule
product fumarate simple_molecule
aspA-dcuA_mRNA DcuA
Name: aspA-dcuA_mRNA -> DcuA
Description: Translation of DcuA
Type: translation
Pathway Components: aspA-dcuA_mRNA -> DcuA
Components:
Function Name Type
product DcuA protein
reactant aspA-dcuA_mRNA RNA
DcuA DcuB succinate_Ext + fumarate_Ext succinate + fumarate
Name: succinate_Ext + fumarate_Ext -> succinate + fumarate
Description: Transport of succinate_Ext, fumarate_Ext through a bacterial membrane, leading to the presence of succinate, fumarate inside the cell.
Type: transport
Pathway Components: succinate_Ext + fumarate_Ext - DcuA - DcuB -> succinate + fumarate
Components:
Function Name Type
catalyzer DcuA protein
catalyzer DcuB protein
product fumarate simple_molecule
reactant fumarate_Ext simple_molecule
product succinate simple_molecule
reactant succinate_Ext simple_molecule
DcuA DcuB succinate_Ext + malate_Ext succinate + malate
Name: succinate_Ext + malate_Ext -> succinate + malate
Description: Transport of succinate_Ext, malate_Ext through a bacterial membrane, leading to the presence of succinate, malate inside the cell.
Type: transport
Pathway Components: succinate_Ext + malate_Ext - DcuA - DcuB -> succinate + malate
Components:
Function Name Type
catalyzer DcuA protein
catalyzer DcuB protein
product malate simple_molecule
reactant malate_Ext simple_molecule
product succinate simple_molecule
reactant succinate_Ext simple_molecule
DcuA DcuB aspartate_Ext + succinate_Ext aspartate + succinate
Name: aspartate_Ext + succinate_Ext -> aspartate + succinate
Description: Transport of aspartate_Ext, succinate_Ext through a bacterial membrane, leading to the presence of aspartate, succinate inside the cell.
Type: transport
Pathway Components: aspartate_Ext + succinate_Ext - DcuA - DcuB -> aspartate + succinate
Components:
Function Name Type
catalyzer DcuA protein
catalyzer DcuB protein
product aspartate simple_molecule
reactant aspartate_Ext simple_molecule
product succinate simple_molecule
reactant succinate_Ext simple_molecule
DcuA DcuB fumarate_Ext fumarate
Name: fumarate_Ext -> fumarate
Description: Transport of fumarate_Ext through a bacterial membrane, leading to the presence of fumarate inside the cell.
Type: transport
Pathway Components: fumarate_Ext - DcuA - DcuB -> fumarate
Components:
Function Name Type
catalyzer DcuA protein
catalyzer DcuB protein
product fumarate simple_molecule
reactant fumarate_Ext simple_molecule
dcuSR_mRNA DcuS
Name: dcuSR_mRNA -> DcuS
Description: Translation of DcuS
Type: translation
Pathway Components: dcuSR_mRNA -> DcuS
Components:
Function Name Type
product DcuS protein
reactant dcuSR_mRNA RNA
dcuSR_mRNA YjdH
Name: dcuSR_mRNA -> YjdH
Description: Translation of YjdH
Type: translation
Pathway Components: dcuSR_mRNA -> YjdH
Components:
Function Name Type
product YjdH protein
reactant dcuSR_mRNA RNA
dcuSR_mRNA DcuR
Name: dcuSR_mRNA -> DcuR
Description: Translation of DcuR
Type: translation
Pathway Components: dcuSR_mRNA -> DcuR
Components:
Function Name Type
product DcuR protein
reactant dcuSR_mRNA RNA
ydhYVWXUT_mRNA YdhY
Name: ydhYVWXUT_mRNA -> YdhY
Description: Translation of YdhY
Type: translation
Pathway Components: ydhYVWXUT_mRNA -> YdhY
Components:
Function Name Type
product YdhY protein
reactant ydhYVWXUT_mRNA RNA
ydhYVWXUT_mRNA YdhV
Name: ydhYVWXUT_mRNA -> YdhV
Description: Translation of YdhV
Type: translation
Pathway Components: ydhYVWXUT_mRNA -> YdhV
Components:
Function Name Type
product YdhV protein
reactant ydhYVWXUT_mRNA RNA
ydhYVWXUT_mRNA YdhW
Name: ydhYVWXUT_mRNA -> YdhW
Description: Translation of YdhW
Type: translation
Pathway Components: ydhYVWXUT_mRNA -> YdhW
Components:
Function Name Type
product YdhW protein
reactant ydhYVWXUT_mRNA RNA
ydhYVWXUT_mRNA YdhX
Name: ydhYVWXUT_mRNA -> YdhX
Description: Translation of YdhX
Type: translation
Pathway Components: ydhYVWXUT_mRNA -> YdhX
Components:
Function Name Type
product YdhX protein
reactant ydhYVWXUT_mRNA RNA
ydhYVWXUT_mRNA YdhU
Name: ydhYVWXUT_mRNA -> YdhU
Description: Translation of YdhU
Type: translation
Pathway Components: ydhYVWXUT_mRNA -> YdhU
Components:
Function Name Type
product YdhU protein
reactant ydhYVWXUT_mRNA RNA
ydhYVWXUT_mRNA YdhT
Name: ydhYVWXUT_mRNA -> YdhT
Description: Translation of YdhT
Type: translation
Pathway Components: ydhYVWXUT_mRNA -> YdhT
Components:
Function Name Type
product YdhT protein
reactant ydhYVWXUT_mRNA RNA
ytfE_mRNA YtfE
Name: ytfE_mRNA -> YtfE
Description: Translation of YtfE
Type: translation
Pathway Components: ytfE_mRNA -> YtfE
Components:
Function Name Type
product YtfE protein
reactant ytfE_mRNA RNA
yeaR-yoaG_mRNA YeaR
Name: yeaR-yoaG_mRNA -> YeaR
Description: Translation of YeaR
Type: translation
Pathway Components: yeaR-yoaG_mRNA -> YeaR
Components:
Function Name Type
product YeaR protein
reactant yeaR-yoaG_mRNA RNA
yeaR-yoaG_mRNA YoaG
Name: yeaR-yoaG_mRNA -> YoaG
Description: Translation of YoaG
Type: translation
Pathway Components: yeaR-yoaG_mRNA -> YoaG
Components:
Function Name Type
product YoaG protein
reactant yeaR-yoaG_mRNA RNA
narK_mRNA NarK
Name: narK_mRNA -> NarK
Description: Translation of NarK
Type: translation
Pathway Components: narK_mRNA -> NarK
Components:
Function Name Type
product NarK protein
reactant narK_mRNA RNA
NarK NirC nitrite_Ext nitrite
Name: nitrite_Ext -> nitrite
Description: Transport of nitrite_Ext through a bacterial membrane, leading to the presence of nitrite inside the cell.
Type: transport
Pathway Components: nitrite_Ext - NarK - NirC -> nitrite
Components:
Function Name Type
catalyzer NarK protein
catalyzer NirC protein
product nitrite simple_molecule
reactant nitrite_Ext simple_molecule
NarK nitrite_Ext + nitrate_Ext nitrite + nitrate
Name: nitrite_Ext + nitrate_Ext -> nitrite + nitrate
Description: Transport of nitrite_Ext, nitrate_Ext through a bacterial membrane, leading to the presence of nitrite, nitrate inside the cell.
Type: transport
Pathway Components: nitrite_Ext + nitrate_Ext - NarK -> nitrite + nitrate
Components:
Function Name Type
catalyzer NarK protein
product nitrate simple_molecule
reactant nitrate_Ext simple_molecule
product nitrite simple_molecule
reactant nitrite_Ext simple_molecule
citCDEFXG_mRNA CitC
Name: citCDEFXG_mRNA -> CitC
Description: Translation of CitC
Type: translation
Pathway Components: citCDEFXG_mRNA -> CitC
Components:
Function Name Type
product CitC protein
reactant citCDEFXG_mRNA RNA
CitC Reactants citrate lyase + diphosphate
Name: [a holo citrate lyase acyl-carrier protein] + acetate -> citrate lyase + diphosphate
Description: Reaction transforming [a holo citrate lyase acyl-carrier protein], acetate into citrate lyase, diphosphate
Type: state transition
Pathway Components: [a holo citrate lyase acyl-carrier protein] + acetate - CitC -> citrate lyase + diphosphate
Components:
Function Name Type
catalyzer CitC protein
reactant [a holo citrate lyase acyl-carrier protein] simple_molecule
reactant acetate simple_molecule
product citrate lyase simple_molecule
product diphosphate simple_molecule
citCDEFXG_mRNA CitD
Name: citCDEFXG_mRNA -> CitD
Description: Translation of CitD
Type: translation
Pathway Components: citCDEFXG_mRNA -> CitD
Components:
Function Name Type
product CitD protein
reactant citCDEFXG_mRNA RNA
CitE + CitF + CitD CitD-CitF-CitE
Name: CitE + CitF + CitD -> CitD-CitF-CitE
Description: Reaction transforming CitE, CitF, CitD into CitD-CitF-CitE
Type: state transition
Pathway Components: CitE + CitF + CitD -> CitD-CitF-CitE
Components:
Function Name Type
reactant CitD protein
product CitD-CitF-CitE complex
reactant CitE protein
reactant CitF protein
citCDEFXG_mRNA CitE
Name: citCDEFXG_mRNA -> CitE
Description: Translation of CitE
Type: translation
Pathway Components: citCDEFXG_mRNA -> CitE
Components:
Function Name Type
product CitE protein
reactant citCDEFXG_mRNA RNA
citCDEFXG_mRNA CitF
Name: citCDEFXG_mRNA -> CitF
Description: Translation of CitF
Type: translation
Pathway Components: citCDEFXG_mRNA -> CitF
Components:
Function Name Type
product CitF protein
reactant citCDEFXG_mRNA RNA
citCDEFXG_mRNA CitX
Name: citCDEFXG_mRNA -> CitX
Description: Translation of CitX
Type: translation
Pathway Components: citCDEFXG_mRNA -> CitX
Components:
Function Name Type
product CitX protein
reactant citCDEFXG_mRNA RNA
CitX Reactants Products
Name: [a citrate-lyase acyl-carrier protein] + 2-5-triphosphoribosyl-3-dephospho-CoA -> [a holo citrate lyase acyl-carrier protein] + diphosphate
Description: Reaction transforming [a citrate-lyase acyl-carrier protein], 2-5-triphosphoribosyl-3-dephospho-CoA into [a holo citrate lyase acyl-carrier protein], diphosphate
Type: state transition
Pathway Components: [a citrate-lyase acyl-carrier protein] + 2-5-triphosphoribosyl-3-dephospho-CoA - CitX -> [a holo citrate lyase acyl-carrier protein] + diphosphate
Components:
Function Name Type
reactant 2-5-triphosphoribosyl-3-dephospho-CoA simple_molecule
catalyzer CitX protein
reactant [a citrate-lyase acyl-carrier protein] simple_molecule
product [a holo citrate lyase acyl-carrier protein] simple_molecule
product diphosphate simple_molecule
citCDEFXG_mRNA CitG
Name: citCDEFXG_mRNA -> CitG
Description: Translation of CitG
Type: translation
Pathway Components: citCDEFXG_mRNA -> CitG
Components:
Function Name Type
product CitG protein
reactant citCDEFXG_mRNA RNA
CitG 3-dephospho-CoA 2-5-triphosphoribosyl-3-dephospho-CoA + adenine
Name: 3-dephospho-CoA -> 2-5-triphosphoribosyl-3-dephospho-CoA + adenine
Description: Reaction transforming 3-dephospho-CoA into 2-5-triphosphoribosyl-3-dephospho-CoA, adenine
Type: state transition
Pathway Components: 3-dephospho-CoA - CitG -> 2-5-triphosphoribosyl-3-dephospho-CoA + adenine
Components:
Function Name Type
product 2-5-triphosphoribosyl-3-dephospho-CoA simple_molecule
reactant 3-dephospho-CoA simple_molecule
catalyzer CitG protein
product adenine simple_molecule
nirBDC-cysG_mRNA NirB
Name: nirBDC-cysG_mRNA -> NirB
Description: Translation of NirB
Type: translation
Pathway Components: nirBDC-cysG_mRNA -> NirB
Components:
Function Name Type
product NirB protein
reactant nirBDC-cysG_mRNA RNA
NirB + NirD NirD-NirB
Name: NirB + NirD -> NirD-NirB
Description: Reaction transforming NirB, NirD into NirD-NirB
Type: state transition
Pathway Components: NirB + NirD -> NirD-NirB
Components:
Function Name Type
reactant NirB protein
reactant NirD protein
product NirD-NirB complex
NirD-NirB nitrite ammonium
Name: nitrite -> ammonium
Description: Reaction transforming nitrite into ammonium
Type: state transition
Pathway Components: nitrite - NirD-NirB -> ammonium
Components:
Function Name Type
catalyzer NirD-NirB complex
product ammonium simple_molecule
reactant nitrite simple_molecule
nirBDC-cysG_mRNA NirD
Name: nirBDC-cysG_mRNA -> NirD
Description: Translation of NirD
Type: translation
Pathway Components: nirBDC-cysG_mRNA -> NirD
Components:
Function Name Type
product NirD protein
reactant nirBDC-cysG_mRNA RNA
nirBDC-cysG_mRNA NirC
Name: nirBDC-cysG_mRNA -> NirC
Description: Translation of NirC
Type: translation
Pathway Components: nirBDC-cysG_mRNA -> NirC
Components:
Function Name Type
product NirC protein
reactant nirBDC-cysG_mRNA RNA
nirBDC-cysG_mRNA CysG
Name: nirBDC-cysG_mRNA -> CysG
Description: Translation of CysG
Type: translation
Pathway Components: nirBDC-cysG_mRNA -> CysG
Components:
Function Name Type
product CysG protein
reactant nirBDC-cysG_mRNA RNA
CysG uroporphyrinogen-III + SAM adenosylhomocysteine + precorrin-2
Name: uroporphyrinogen-III + SAM -> adenosylhomocysteine + precorrin-2
Description: Reaction transforming uroporphyrinogen-III, SAM into adenosylhomocysteine, precorrin-2
Type: state transition
Pathway Components: uroporphyrinogen-III + SAM - CysG -> adenosylhomocysteine + precorrin-2
Components:
Function Name Type
catalyzer CysG protein
reactant SAM simple_molecule
product adenosylhomocysteine simple_molecule
product precorrin-2 simple_molecule
reactant uroporphyrinogen-III simple_molecule
CysG precorrin-1 + SAM adenosylhomocysteine + precorrin-2
Name: precorrin-1 + SAM -> adenosylhomocysteine + precorrin-2
Description: Reaction transforming precorrin-1, SAM into adenosylhomocysteine, precorrin-2
Type: state transition
Pathway Components: precorrin-1 + SAM - CysG -> adenosylhomocysteine + precorrin-2
Components:
Function Name Type
catalyzer CysG protein
reactant SAM simple_molecule
product adenosylhomocysteine simple_molecule
reactant precorrin-1 simple_molecule
product precorrin-2 simple_molecule
CysG uroporphyrinogen-III + SAM adenosylhomocysteine + precorrin-1
Name: uroporphyrinogen-III + SAM -> adenosylhomocysteine + precorrin-1
Description: Reaction transforming uroporphyrinogen-III, SAM into adenosylhomocysteine, precorrin-1
Type: state transition
Pathway Components: uroporphyrinogen-III + SAM - CysG -> adenosylhomocysteine + precorrin-1
Components:
Function Name Type
catalyzer CysG protein
reactant SAM simple_molecule
product adenosylhomocysteine simple_molecule
product precorrin-1 simple_molecule
reactant uroporphyrinogen-III simple_molecule
CysG precorrin-2 Precorrin
Name: precorrin-2 -> Precorrin
Description: Reaction transforming precorrin-2 into Precorrin
Type: state transition
Pathway Components: precorrin-2 - CysG -> Precorrin
Components:
Function Name Type
catalyzer CysG protein
product Precorrin simple_molecule
reactant precorrin-2 simple_molecule
CysG Precorrin + Fe+2 siroheme
Name: Precorrin + Fe+2 -> siroheme
Description: Reaction transforming Precorrin, Fe+2 into siroheme
Type: state transition
Pathway Components: Precorrin + Fe+2 - CysG -> siroheme
Components:
Function Name Type
catalyzer CysG protein
reactant Fe+2 simple_molecule
reactant Precorrin simple_molecule
product siroheme simple_molecule
adhE_mRNA AdhE
Name: adhE_mRNA -> AdhE
Description: Translation of AdhE
Type: translation
Pathway Components: adhE_mRNA -> AdhE
Components:
Function Name Type
product AdhE protein
reactant adhE_mRNA RNA
AdhE pyruvate pyruvate formate lyase, active form pyruvate formate-lyase
Name: pyruvate formate lyase, active form -> pyruvate formate-lyase
Description: Reaction transforming pyruvate formate lyase, active form into pyruvate formate-lyase
Type: state transition
Pathway Components: pyruvate formate lyase, active form - AdhE - pyruvate -> pyruvate formate-lyase
Components:
Function Name Type
catalyzer AdhE protein
inhibitor pyruvate simple_molecule
reactant pyruvate formate lyase, active form simple_molecule
product pyruvate formate-lyase simple_molecule
AdhE 1-Alcohol RCHO
Name: 1-Alcohol -> RCHO
Description: Reaction transforming 1-Alcohol into RCHO
Type: state transition
Pathway Components: 1-Alcohol - AdhE -> RCHO
Components:
Function Name Type
reactant 1-Alcohol simple_molecule
catalyzer AdhE protein
product RCHO simple_molecule
AdhE EtOH ethanal
Name: EtOH -> ethanal
Description: Reaction transforming EtOH into ethanal
Type: state transition
Pathway Components: EtOH - AdhE -> ethanal
Components:
Function Name Type
catalyzer AdhE protein
reactant EtOH simple_molecule
product ethanal simple_molecule
AdhE coenzyme A + ethanal acetyl-CoA
Name: coenzyme A + ethanal -> acetyl-CoA
Description: Reaction transforming coenzyme A, ethanal into acetyl-CoA
Type: state transition
Pathway Components: coenzyme A + ethanal - AdhE -> acetyl-CoA
Components:
Function Name Type
catalyzer AdhE protein
product acetyl-CoA simple_molecule
reactant coenzyme A simple_molecule
reactant ethanal simple_molecule
fdhF_mRNA FdhF
Name: fdhF_mRNA -> FdhF
Description: Translation of FdhF
Type: translation
Pathway Components: fdhF_mRNA -> FdhF
Components:
Function Name Type
product FdhF protein
reactant fdhF_mRNA RNA
HycG + FdhF + HycF + HycD + HycE + HycC + HycB FdhF-HycE-HycB-HycG-HycF-HycC-HycD
Name: HycG + FdhF + HycF + HycD + HycE + HycC + HycB -> FdhF-HycE-HycB-HycG-HycF-HycC-HycD
Description: Reaction transforming HycG, FdhF, HycF, HycD, HycE, HycC, HycB into FdhF-HycE-HycB-HycG-HycF-HycC-HycD
Type: state transition
Pathway Components: HycG + FdhF + HycF + HycD + HycE + HycC + HycB -> FdhF-HycE-HycB-HycG-HycF-HycC-HycD
Components:
Function Name Type
reactant FdhF protein
product FdhF-HycE-HycB-HycG-HycF-HycC-HycD complex
reactant HycB protein
reactant HycC protein
reactant HycD protein
reactant HycE protein
reactant HycF protein
reactant HycG protein
FdhF-HycE-HycB-HycG-HycF-HycC-HycD formate hydrogen + CO2
Name: formate -> hydrogen + CO2
Description: Reaction transforming formate into hydrogen, CO2
Type: state transition
Pathway Components: formate - FdhF-HycE-HycB-HycG-HycF-HycC-HycD -> hydrogen + CO2
Components:
Function Name Type
product CO2 simple_molecule
catalyzer FdhF-HycE-HycB-HycG-HycF-HycC-HycD complex
reactant formate simple_molecule
product hydrogen simple_molecule
FdhF oxidized hydrogenase 3 + formate reduced hydrogenase 3 + CO2
Name: oxidized hydrogenase 3 + formate -> reduced hydrogenase 3 + CO2
Description: Reaction transforming oxidized hydrogenase 3, formate into reduced hydrogenase 3, CO2
Type: state transition
Pathway Components: oxidized hydrogenase 3 + formate - FdhF -> reduced hydrogenase 3 + CO2
Components:
Function Name Type
product CO2 simple_molecule
catalyzer FdhF protein
reactant formate simple_molecule
reactant oxidized hydrogenase 3 simple_molecule
product reduced hydrogenase 3 simple_molecule
FdhF nitrate nitrite acceptors + formate A(H2) + CO2
Name: acceptors + formate -> A(H2) + CO2
Description: Reaction transforming acceptors, formate into A(H2), CO2
Type: state transition
Pathway Components: acceptors + formate - FdhF - nitrate - nitrite -> A(H2) + CO2
Components:
Function Name Type
product A(H2) simple_molecule
product CO2 simple_molecule
catalyzer FdhF protein
reactant acceptors simple_molecule
reactant formate simple_molecule
inhibitor nitrate simple_molecule
inhibitor nitrite simple_molecule
fdnGHI_mRNA FdnG
Name: fdnGHI_mRNA -> FdnG
Description: Translation of FdnG
Type: translation
Pathway Components: fdnGHI_mRNA -> FdnG
Components:
Function Name Type
product FdnG protein
reactant fdnGHI_mRNA RNA
FdnG + FdnH + FdnI FdnI-FdnH-FdnG
Name: FdnG + FdnH + FdnI -> FdnI-FdnH-FdnG
Description: Reaction transforming FdnG, FdnH, FdnI into FdnI-FdnH-FdnG
Type: state transition
Pathway Components: FdnG + FdnH + FdnI -> FdnI-FdnH-FdnG
Components:
Function Name Type
reactant FdnG protein
reactant FdnH protein
reactant FdnI protein
product FdnI-FdnH-FdnG complex
fdnGHI_mRNA FdnH
Name: fdnGHI_mRNA -> FdnH
Description: Translation of FdnH
Type: translation
Pathway Components: fdnGHI_mRNA -> FdnH
Components:
Function Name Type
product FdnH protein
reactant fdnGHI_mRNA RNA
fdnGHI_mRNA FdnI
Name: fdnGHI_mRNA -> FdnI
Description: Translation of FdnI
Type: translation
Pathway Components: fdnGHI_mRNA -> FdnI
Components:
Function Name Type
product FdnI protein
reactant fdnGHI_mRNA RNA
ynfEFGH-dmsD_mRNA YnfE
Name: ynfEFGH-dmsD_mRNA -> YnfE
Description: Translation of YnfE
Type: translation
Pathway Components: ynfEFGH-dmsD_mRNA -> YnfE
Components:
Function Name Type
product YnfE protein
reactant ynfEFGH-dmsD_mRNA RNA
YnfE + YnfF + YnfG + YnfH YnfE-YnfF-YnfG-YnfH
Name: YnfE + YnfF + YnfG + YnfH -> YnfE-YnfF-YnfG-YnfH
Description: Reaction transforming YnfE, YnfF, YnfG, YnfH into YnfE-YnfF-YnfG-YnfH
Type: state transition
Pathway Components: YnfE + YnfF + YnfG + YnfH -> YnfE-YnfF-YnfG-YnfH
Components:
Function Name Type
reactant YnfE protein
product YnfE-YnfF-YnfG-YnfH complex
reactant YnfF protein
reactant YnfG protein
reactant YnfH protein
YnfE-YnfF-YnfG-YnfH selenate + A(H2) acceptors + selenite
Name: selenate + A(H2) -> acceptors + selenite
Description: Reaction transforming selenate, A(H2) into acceptors, selenite
Type: state transition
Pathway Components: selenate + A(H2) - YnfE-YnfF-YnfG-YnfH -> acceptors + selenite
Components:
Function Name Type
reactant A(H2) simple_molecule
catalyzer YnfE-YnfF-YnfG-YnfH complex
product acceptors simple_molecule
reactant selenate simple_molecule
product selenite simple_molecule
ynfEFGH-dmsD_mRNA YnfF
Name: ynfEFGH-dmsD_mRNA -> YnfF
Description: Translation of YnfF
Type: translation
Pathway Components: ynfEFGH-dmsD_mRNA -> YnfF
Components:
Function Name Type
product YnfF protein
reactant ynfEFGH-dmsD_mRNA RNA
ynfEFGH-dmsD_mRNA YnfG
Name: ynfEFGH-dmsD_mRNA -> YnfG
Description: Translation of YnfG
Type: translation
Pathway Components: ynfEFGH-dmsD_mRNA -> YnfG
Components:
Function Name Type
product YnfG protein
reactant ynfEFGH-dmsD_mRNA RNA
ynfEFGH-dmsD_mRNA YnfH
Name: ynfEFGH-dmsD_mRNA -> YnfH
Description: Translation of YnfH
Type: translation
Pathway Components: ynfEFGH-dmsD_mRNA -> YnfH
Components:
Function Name Type
product YnfH protein
reactant ynfEFGH-dmsD_mRNA RNA
ynfEFGH-dmsD_mRNA DmsD
Name: ynfEFGH-dmsD_mRNA -> DmsD
Description: Translation of DmsD
Type: translation
Pathway Components: ynfEFGH-dmsD_mRNA -> DmsD
Components:
Function Name Type
product DmsD protein
reactant ynfEFGH-dmsD_mRNA RNA
caiF_mRNA CaiF
Name: caiF_mRNA -> CaiF
Description: Translation of CaiF
Type: translation
Pathway Components: caiF_mRNA -> CaiF
Components:
Function Name Type
product CaiF protein
reactant caiF_mRNA RNA
napFDAGHBC-ccmABCDEFGH_mRNA NapF
Name: napFDAGHBC-ccmABCDEFGH_mRNA -> NapF
Description: Translation of NapF
Type: translation
Pathway Components: napFDAGHBC-ccmABCDEFGH_mRNA -> NapF
Components:
Function Name Type
product NapF protein
reactant napFDAGHBC-ccmABCDEFGH_mRNA RNA
napFDAGHBC-ccmABCDEFGH_mRNA NapD
Name: napFDAGHBC-ccmABCDEFGH_mRNA -> NapD
Description: Translation of NapD
Type: translation
Pathway Components: napFDAGHBC-ccmABCDEFGH_mRNA -> NapD
Components:
Function Name Type
product NapD protein
reactant napFDAGHBC-ccmABCDEFGH_mRNA RNA
napFDAGHBC-ccmABCDEFGH_mRNA NapA
Name: napFDAGHBC-ccmABCDEFGH_mRNA -> NapA
Description: Translation of NapA
Type: translation
Pathway Components: napFDAGHBC-ccmABCDEFGH_mRNA -> NapA
Components:
Function Name Type
product NapA protein
reactant napFDAGHBC-ccmABCDEFGH_mRNA RNA
NapB + NapA NapB-NapA
Name: NapB + NapA -> NapB-NapA
Description: Reaction transforming NapB, NapA into NapB-NapA
Type: state transition
Pathway Components: NapB + NapA -> NapB-NapA
Components:
Function Name Type
reactant NapA protein
reactant NapB protein
product NapB-NapA complex
NapB-NapA Reduced-NapC-proteins + nitrate Oxidized-NapC-proteins + nitrite
Name: Reduced-NapC-proteins + nitrate -> Oxidized-NapC-proteins + nitrite
Description: Reaction transforming Reduced-NapC-proteins, nitrate into Oxidized-NapC-proteins, nitrite
Type: state transition
Pathway Components: Reduced-NapC-proteins + nitrate - NapB-NapA -> Oxidized-NapC-proteins + nitrite
Components:
Function Name Type
catalyzer NapB-NapA complex
product Oxidized-NapC-proteins simple_molecule
reactant Reduced-NapC-proteins simple_molecule
reactant nitrate simple_molecule
product nitrite simple_molecule
napFDAGHBC-ccmABCDEFGH_mRNA NapG
Name: napFDAGHBC-ccmABCDEFGH_mRNA -> NapG
Description: Translation of NapG
Type: translation
Pathway Components: napFDAGHBC-ccmABCDEFGH_mRNA -> NapG
Components:
Function Name Type
product NapG protein
reactant napFDAGHBC-ccmABCDEFGH_mRNA RNA
NapG + NapH NapG-NapH
Name: NapG + NapH -> NapG-NapH
Description: Reaction transforming NapG, NapH into NapG-NapH
Type: state transition
Pathway Components: NapG + NapH -> NapG-NapH
Components:
Function Name Type
reactant NapG protein
product NapG-NapH complex
reactant NapH protein
NapG-NapH Oxidized-NapC-proteins + ubiquinol Reduced-NapC-proteins + ubiquinone
Name: Oxidized-NapC-proteins + ubiquinol -> Reduced-NapC-proteins + ubiquinone
Description: Reaction transforming Oxidized-NapC-proteins, ubiquinol into Reduced-NapC-proteins, ubiquinone
Type: state transition
Pathway Components: Oxidized-NapC-proteins + ubiquinol - NapG-NapH -> Reduced-NapC-proteins + ubiquinone
Components:
Function Name Type
catalyzer NapG-NapH complex
reactant Oxidized-NapC-proteins simple_molecule
product Reduced-NapC-proteins simple_molecule
reactant ubiquinol simple_molecule
product ubiquinone simple_molecule
napFDAGHBC-ccmABCDEFGH_mRNA NapH
Name: napFDAGHBC-ccmABCDEFGH_mRNA -> NapH
Description: Translation of NapH
Type: translation
Pathway Components: napFDAGHBC-ccmABCDEFGH_mRNA -> NapH
Components:
Function Name Type
product NapH protein
reactant napFDAGHBC-ccmABCDEFGH_mRNA RNA
napFDAGHBC-ccmABCDEFGH_mRNA NapB
Name: napFDAGHBC-ccmABCDEFGH_mRNA -> NapB
Description: Translation of NapB
Type: translation
Pathway Components: napFDAGHBC-ccmABCDEFGH_mRNA -> NapB
Components:
Function Name Type
product NapB protein
reactant napFDAGHBC-ccmABCDEFGH_mRNA RNA
napFDAGHBC-ccmABCDEFGH_mRNA NapC
Name: napFDAGHBC-ccmABCDEFGH_mRNA -> NapC
Description: Translation of NapC
Type: translation
Pathway Components: napFDAGHBC-ccmABCDEFGH_mRNA -> NapC
Components:
Function Name Type
product NapC protein
reactant napFDAGHBC-ccmABCDEFGH_mRNA RNA
NapC ferri c-type cytochrome + menaquinol reduced Cytochrome C protein + vitamin K2
Name: ferri c-type cytochrome + menaquinol -> reduced Cytochrome C protein + vitamin K2
Description: Reaction transforming ferri c-type cytochrome, menaquinol into reduced Cytochrome C protein, vitamin K2
Type: state transition
Pathway Components: ferri c-type cytochrome + menaquinol - NapC -> reduced Cytochrome C protein + vitamin K2
Components:
Function Name Type
catalyzer NapC protein
reactant ferri c-type cytochrome simple_molecule
reactant menaquinol simple_molecule
product reduced Cytochrome C protein simple_molecule
product vitamin K2 simple_molecule
napFDAGHBC-ccmABCDEFGH_mRNA CcmA
Name: napFDAGHBC-ccmABCDEFGH_mRNA -> CcmA
Description: Translation of CcmA
Type: translation
Pathway Components: napFDAGHBC-ccmABCDEFGH_mRNA -> CcmA
Components:
Function Name Type
product CcmA protein
reactant napFDAGHBC-ccmABCDEFGH_mRNA RNA
CcmB + CcmE + CcmA + CcmC + CcmD CcmD-CcmB-CcmA-CcmE-CcmC
Name: CcmB + CcmE + CcmA + CcmC + CcmD -> CcmD-CcmB-CcmA-CcmE-CcmC
Description: Reaction transforming CcmB, CcmE, CcmA, CcmC, CcmD into CcmD-CcmB-CcmA-CcmE-CcmC
Type: state transition
Pathway Components: CcmB + CcmE + CcmA + CcmC + CcmD -> CcmD-CcmB-CcmA-CcmE-CcmC
Components:
Function Name Type
reactant CcmA protein
reactant CcmB protein
reactant CcmC protein
reactant CcmD protein
product CcmD-CcmB-CcmA-CcmE-CcmC complex
reactant CcmE protein
CcmD-CcmB-CcmA-CcmE-CcmC protoheme IX_Ext protoheme IX
Name: protoheme IX_Ext -> protoheme IX
Description: Transport of protoheme IX_Ext through a bacterial membrane, leading to the presence of protoheme IX inside the cell.
Type: transport
Pathway Components: protoheme IX_Ext - CcmD-CcmB-CcmA-CcmE-CcmC -> protoheme IX
Components:
Function Name Type
catalyzer CcmD-CcmB-CcmA-CcmE-CcmC complex
product protoheme IX simple_molecule
reactant protoheme IX_Ext simple_molecule
napFDAGHBC-ccmABCDEFGH_mRNA CcmB
Name: napFDAGHBC-ccmABCDEFGH_mRNA -> CcmB
Description: Translation of CcmB
Type: translation
Pathway Components: napFDAGHBC-ccmABCDEFGH_mRNA -> CcmB
Components:
Function Name Type
product CcmB protein
reactant napFDAGHBC-ccmABCDEFGH_mRNA RNA
napFDAGHBC-ccmABCDEFGH_mRNA CcmC
Name: napFDAGHBC-ccmABCDEFGH_mRNA -> CcmC
Description: Translation of CcmC
Type: translation
Pathway Components: napFDAGHBC-ccmABCDEFGH_mRNA -> CcmC
Components:
Function Name Type
product CcmC protein
reactant napFDAGHBC-ccmABCDEFGH_mRNA RNA
napFDAGHBC-ccmABCDEFGH_mRNA CcmD
Name: napFDAGHBC-ccmABCDEFGH_mRNA -> CcmD
Description: Translation of CcmD
Type: translation
Pathway Components: napFDAGHBC-ccmABCDEFGH_mRNA -> CcmD
Components:
Function Name Type
product CcmD protein
reactant napFDAGHBC-ccmABCDEFGH_mRNA RNA
napFDAGHBC-ccmABCDEFGH_mRNA CcmE
Name: napFDAGHBC-ccmABCDEFGH_mRNA -> CcmE
Description: Translation of CcmE
Type: translation
Pathway Components: napFDAGHBC-ccmABCDEFGH_mRNA -> CcmE
Components:
Function Name Type
product CcmE protein
reactant napFDAGHBC-ccmABCDEFGH_mRNA RNA
CcmG + CcmF + CcmE + CcmH CcmE-CcmF-CcmG-CcmH
Name: CcmG + CcmF + CcmE + CcmH -> CcmE-CcmF-CcmG-CcmH
Description: Reaction transforming CcmG, CcmF, CcmE, CcmH into CcmE-CcmF-CcmG-CcmH
Type: state transition
Pathway Components: CcmG + CcmF + CcmE + CcmH -> CcmE-CcmF-CcmG-CcmH
Components:
Function Name Type
reactant CcmE protein
product CcmE-CcmF-CcmG-CcmH complex
reactant CcmF protein
reactant CcmG protein
reactant CcmH protein
napFDAGHBC-ccmABCDEFGH_mRNA CcmF
Name: napFDAGHBC-ccmABCDEFGH_mRNA -> CcmF
Description: Translation of CcmF
Type: translation
Pathway Components: napFDAGHBC-ccmABCDEFGH_mRNA -> CcmF
Components:
Function Name Type
product CcmF protein
reactant napFDAGHBC-ccmABCDEFGH_mRNA RNA
napFDAGHBC-ccmABCDEFGH_mRNA CcmG
Name: napFDAGHBC-ccmABCDEFGH_mRNA -> CcmG
Description: Translation of CcmG
Type: translation
Pathway Components: napFDAGHBC-ccmABCDEFGH_mRNA -> CcmG
Components:
Function Name Type
product CcmG protein
reactant napFDAGHBC-ccmABCDEFGH_mRNA RNA
napFDAGHBC-ccmABCDEFGH_mRNA CcmH
Name: napFDAGHBC-ccmABCDEFGH_mRNA -> CcmH
Description: Translation of CcmH
Type: translation
Pathway Components: napFDAGHBC-ccmABCDEFGH_mRNA -> CcmH
Components:
Function Name Type
product CcmH protein
reactant napFDAGHBC-ccmABCDEFGH_mRNA RNA
aspA_mRNA AspA
Name: aspA_mRNA -> AspA
Description: Translation of AspA
Type: translation
Pathway Components: aspA_mRNA -> AspA
Components:
Function Name Type
product AspA protein
reactant aspA_mRNA RNA
dpiBA_mRNA DpiB
Name: dpiBA_mRNA -> DpiB
Description: Translation of DpiB
Type: translation
Pathway Components: dpiBA_mRNA -> DpiB
Components:
Function Name Type
product DpiB protein
reactant dpiBA_mRNA RNA
dpiBA_mRNA DpiA
Name: dpiBA_mRNA -> DpiA
Description: Translation of DpiA
Type: translation
Pathway Components: dpiBA_mRNA -> DpiA
Components:
Function Name Type
product DpiA protein
reactant dpiBA_mRNA RNA
dmsABC_mRNA DmsA
Name: dmsABC_mRNA -> DmsA
Description: Translation of DmsA
Type: translation
Pathway Components: dmsABC_mRNA -> DmsA
Components:
Function Name Type
product DmsA protein
reactant dmsABC_mRNA RNA
DmsB + DmsC + DmsA DmsA-DmsB-DmsC
Name: DmsB + DmsC + DmsA -> DmsA-DmsB-DmsC
Description: Reaction transforming DmsB, DmsC, DmsA into DmsA-DmsB-DmsC
Type: state transition
Pathway Components: DmsB + DmsC + DmsA -> DmsA-DmsB-DmsC
Components:
Function Name Type
reactant DmsA protein
product DmsA-DmsB-DmsC complex
reactant DmsB protein
reactant DmsC protein
DmsA-DmsB-DmsC Fe+2 menaquinol + DMSO dimethylsulfide + vitamin K2
Name: menaquinol + DMSO -> dimethylsulfide + vitamin K2
Description: Reaction transforming menaquinol, DMSO into dimethylsulfide, vitamin K2
Type: state transition
Pathway Components: menaquinol + DMSO - DmsA-DmsB-DmsC - Fe+2 -> dimethylsulfide + vitamin K2
Components:
Function Name Type
reactant DMSO simple_molecule
catalyzer DmsA-DmsB-DmsC complex
inhibitor Fe+2 simple_molecule
product dimethylsulfide simple_molecule
reactant menaquinol simple_molecule
product vitamin K2 simple_molecule
dmsABC_mRNA DmsB
Name: dmsABC_mRNA -> DmsB
Description: Translation of DmsB
Type: translation
Pathway Components: dmsABC_mRNA -> DmsB
Components:
Function Name Type
product DmsB protein
reactant dmsABC_mRNA RNA
dmsABC_mRNA DmsC
Name: dmsABC_mRNA -> DmsC
Description: Translation of DmsC
Type: translation
Pathway Components: dmsABC_mRNA -> DmsC
Components:
Function Name Type
product DmsC protein
reactant dmsABC_mRNA RNA
moeAB_mRNA MoeA
Name: moeAB_mRNA -> MoeA
Description: Translation of MoeA
Type: translation
Pathway Components: moeAB_mRNA -> MoeA
Components:
Function Name Type
product MoeA protein
reactant moeAB_mRNA RNA
MoeA H2Dtpp-mADP + molybdate MoCo (dioxyo)
Name: H2Dtpp-mADP + molybdate -> MoCo (dioxyo)
Description: Reaction transforming H2Dtpp-mADP, molybdate into MoCo (dioxyo)
Type: state transition
Pathway Components: H2Dtpp-mADP + molybdate - MoeA -> MoCo (dioxyo)
Components:
Function Name Type
reactant H2Dtpp-mADP simple_molecule
product MoCo (dioxyo) simple_molecule
catalyzer MoeA protein
reactant molybdate simple_molecule
moeAB_mRNA MoeB
Name: moeAB_mRNA -> MoeB
Description: Translation of MoeB
Type: translation
Pathway Components: moeAB_mRNA -> MoeB
Components:
Function Name Type
product MoeB protein
reactant moeAB_mRNA RNA
MoeB MPT-Synthase-small-subunits Products
Name: MPT-Synthase-small-subunits -> carboxy-adenylated small subunit of molybdopterin synthase + diphosphate
Description: Reaction transforming MPT-Synthase-small-subunits into carboxy-adenylated small subunit of molybdopterin synthase, diphosphate
Type: state transition
Pathway Components: MPT-Synthase-small-subunits - MoeB -> carboxy-adenylated small subunit of molybdopterin synthase + diphosphate
Components:
Function Name Type
reactant MPT-Synthase-small-subunits simple_molecule
catalyzer MoeB protein
product carboxy-adenylated small subunit of molybdopterin synthase simple_molecule
product diphosphate simple_molecule
hcp-hcr-poxB_mRNA Hcp
Name: hcp-hcr-poxB_mRNA -> Hcp
Description: Translation of Hcp
Type: translation
Pathway Components: hcp-hcr-poxB_mRNA -> Hcp
Components:
Function Name Type
product Hcp protein
reactant hcp-hcr-poxB_mRNA RNA
Hcp A(H2) + NH2OH acceptors + ammonium
Name: A(H2) + NH2OH -> acceptors + ammonium
Description: Reaction transforming A(H2), NH2OH into acceptors, ammonium
Type: state transition
Pathway Components: A(H2) + NH2OH - Hcp -> acceptors + ammonium
Components:
Function Name Type
reactant A(H2) simple_molecule
catalyzer Hcp protein
reactant NH2OH simple_molecule
product acceptors simple_molecule
product ammonium simple_molecule
hcp-hcr-poxB_mRNA Hcr
Name: hcp-hcr-poxB_mRNA -> Hcr
Description: Translation of Hcr
Type: translation
Pathway Components: hcp-hcr-poxB_mRNA -> Hcr
Components:
Function Name Type
product Hcr protein
reactant hcp-hcr-poxB_mRNA RNA
Hcr oxidized hybrid-cluster protein reduced hybrid-cluster protein
Name: oxidized hybrid-cluster protein -> reduced hybrid-cluster protein
Description: Reaction transforming oxidized hybrid-cluster protein into reduced hybrid-cluster protein
Type: state transition
Pathway Components: oxidized hybrid-cluster protein - Hcr -> reduced hybrid-cluster protein
Components:
Function Name Type
catalyzer Hcr protein
reactant oxidized hybrid-cluster protein simple_molecule
product reduced hybrid-cluster protein simple_molecule
hcp-hcr-poxB_mRNA PoxB
Name: hcp-hcr-poxB_mRNA -> PoxB
Description: Translation of PoxB
Type: translation
Pathway Components: hcp-hcr-poxB_mRNA -> PoxB
Components:
Function Name Type
product PoxB protein
reactant hcp-hcr-poxB_mRNA RNA
PoxB ubiquinone + pyruvate ubiquinol + acetate + CO2
Name: ubiquinone + pyruvate -> ubiquinol + acetate + CO2
Description: Reaction transforming ubiquinone, pyruvate into ubiquinol, acetate , CO2
Type: state transition
Pathway Components: ubiquinone + pyruvate - PoxB -> ubiquinol + acetate + CO2
Components:
Function Name Type
product CO2 simple_molecule
catalyzer PoxB protein
product acetate simple_molecule
reactant pyruvate simple_molecule
product ubiquinol simple_molecule
reactant ubiquinone simple_molecule
PoxB pyruvate + ethanal acetoin + CO2
Name: pyruvate + ethanal -> acetoin + CO2
Description: Reaction transforming pyruvate, ethanal into acetoin, CO2
Type: state transition
Pathway Components: pyruvate + ethanal - PoxB -> acetoin + CO2
Components:
Function Name Type
product CO2 simple_molecule
catalyzer PoxB protein
product acetoin simple_molecule
reactant ethanal simple_molecule
reactant pyruvate simple_molecule
hyaABCDEF_mRNA HyaA
Name: hyaABCDEF_mRNA -> HyaA
Description: Translation of HyaA
Type: translation
Pathway Components: hyaABCDEF_mRNA -> HyaA
Components:
Function Name Type
product HyaA protein
reactant hyaABCDEF_mRNA RNA
HyaC + HyaA + HyaB HyaA-HyaB-HyaC
Name: HyaC + HyaA + HyaB -> HyaA-HyaB-HyaC
Description: Reaction transforming HyaC, HyaA, HyaB into HyaA-HyaB-HyaC
Type: state transition
Pathway Components: HyaC + HyaA + HyaB -> HyaA-HyaB-HyaC
Components:
Function Name Type
reactant HyaA protein
product HyaA-HyaB-HyaC complex
reactant HyaB protein
reactant HyaC protein
hyaABCDEF_mRNA HyaB
Name: hyaABCDEF_mRNA -> HyaB
Description: Translation of HyaB
Type: translation
Pathway Components: hyaABCDEF_mRNA -> HyaB
Components:
Function Name Type
product HyaB protein
reactant hyaABCDEF_mRNA RNA
hyaABCDEF_mRNA HyaC
Name: hyaABCDEF_mRNA -> HyaC
Description: Translation of HyaC
Type: translation
Pathway Components: hyaABCDEF_mRNA -> HyaC
Components:
Function Name Type
product HyaC protein
reactant hyaABCDEF_mRNA RNA
hyaABCDEF_mRNA HyaD
Name: hyaABCDEF_mRNA -> HyaD
Description: Translation of HyaD
Type: translation
Pathway Components: hyaABCDEF_mRNA -> HyaD
Components:
Function Name Type
product HyaD protein
reactant hyaABCDEF_mRNA RNA
hyaABCDEF_mRNA HyaE
Name: hyaABCDEF_mRNA -> HyaE
Description: Translation of HyaE
Type: translation
Pathway Components: hyaABCDEF_mRNA -> HyaE
Components:
Function Name Type
product HyaE protein
reactant hyaABCDEF_mRNA RNA
hyaABCDEF_mRNA HyaF
Name: hyaABCDEF_mRNA -> HyaF
Description: Translation of HyaF
Type: translation
Pathway Components: hyaABCDEF_mRNA -> HyaF
Components:
Function Name Type
product HyaF protein
reactant hyaABCDEF_mRNA RNA
hcp-hcr_mRNA Hcp
Name: hcp-hcr_mRNA -> Hcp
Description: Translation of Hcp
Type: translation
Pathway Components: hcp-hcr_mRNA -> Hcp
Components:
Function Name Type
product Hcp protein
reactant hcp-hcr_mRNA RNA
hcp-hcr_mRNA Hcr
Name: hcp-hcr_mRNA -> Hcr
Description: Translation of Hcr
Type: translation
Pathway Components: hcp-hcr_mRNA -> Hcr
Components:
Function Name Type
product Hcr protein
reactant hcp-hcr_mRNA RNA
narGHJI_mRNA NarG
Name: narGHJI_mRNA -> NarG
Description: Translation of NarG
Type: translation
Pathway Components: narGHJI_mRNA -> NarG
Components:
Function Name Type
product NarG protein
reactant narGHJI_mRNA RNA
NarG + NarI + NarH NarG-NarH-NarI
Name: NarG + NarI + NarH -> NarG-NarH-NarI
Description: Reaction transforming NarG, NarI, NarH into NarG-NarH-NarI
Type: state transition
Pathway Components: NarG + NarI + NarH -> NarG-NarH-NarI
Components:
Function Name Type
reactant NarG protein
product NarG-NarH-NarI complex
reactant NarH protein
reactant NarI protein
NarG-NarH-NarI menaquinol_Ext + nitrate_Ext vitamin K2 + nitrite
Name: menaquinol_Ext + nitrate_Ext -> vitamin K2 + nitrite
Description: Transport of menaquinol_Ext, nitrate_Ext through a bacterial membrane, leading to the presence of vitamin K2, nitrite inside the cell.
Type: transport
Pathway Components: menaquinol_Ext + nitrate_Ext - NarG-NarH-NarI -> vitamin K2 + nitrite
Components:
Function Name Type
catalyzer NarG-NarH-NarI complex
reactant menaquinol_Ext simple_molecule
reactant nitrate_Ext simple_molecule
product nitrite simple_molecule
product vitamin K2 simple_molecule
NarG-NarH-NarI ubiquinol_Ext + nitrate_Ext ubiquinone + nitrite
Name: ubiquinol_Ext + nitrate_Ext -> ubiquinone + nitrite
Description: Transport of ubiquinol_Ext, nitrate_Ext through a bacterial membrane, leading to the presence of ubiquinone, nitrite inside the cell.
Type: transport
Pathway Components: ubiquinol_Ext + nitrate_Ext - NarG-NarH-NarI -> ubiquinone + nitrite
Components:
Function Name Type
catalyzer NarG-NarH-NarI complex
reactant nitrate_Ext simple_molecule
product nitrite simple_molecule
reactant ubiquinol_Ext simple_molecule
product ubiquinone simple_molecule
NarG-NarH-NarI A(H2) + TeO2 acceptors + Te0
Name: A(H2) + TeO2 -> acceptors + Te0
Description: Reaction transforming A(H2), TeO2 into acceptors, Te0
Type: state transition
Pathway Components: A(H2) + TeO2 - NarG-NarH-NarI -> acceptors + Te0
Components:
Function Name Type
reactant A(H2) simple_molecule
catalyzer NarG-NarH-NarI complex
product Te0 simple_molecule
reactant TeO2 simple_molecule
product acceptors simple_molecule
narGHJI_mRNA NarH
Name: narGHJI_mRNA -> NarH
Description: Translation of NarH
Type: translation
Pathway Components: narGHJI_mRNA -> NarH
Components:
Function Name Type
product NarH protein
reactant narGHJI_mRNA RNA
narGHJI_mRNA NarJ
Name: narGHJI_mRNA -> NarJ
Description: Translation of NarJ
Type: translation
Pathway Components: narGHJI_mRNA -> NarJ
Components:
Function Name Type
product NarJ protein
reactant narGHJI_mRNA RNA
narGHJI_mRNA NarI
Name: narGHJI_mRNA -> NarI
Description: Translation of NarI
Type: translation
Pathway Components: narGHJI_mRNA -> NarI
Components:
Function Name Type
product NarI protein
reactant narGHJI_mRNA RNA
cydDC_mRNA CydD
Name: cydDC_mRNA -> CydD
Description: Translation of CydD
Type: translation
Pathway Components: cydDC_mRNA -> CydD
Components:
Function Name Type
product CydD protein
reactant cydDC_mRNA RNA
CydD + CydC CydD-CydC
Name: CydD + CydC -> CydD-CydC
Description: Reaction transforming CydD, CydC into CydD-CydC
Type: state transition
Pathway Components: CydD + CydC -> CydD-CydC
Components:
Function Name Type
reactant CydC protein
reactant CydD protein
product CydD-CydC complex
CydD-CydC glutathione_Ext glutathione
Name: glutathione_Ext -> glutathione
Description: Transport of glutathione_Ext through a bacterial membrane, leading to the presence of glutathione inside the cell.
Type: transport
Pathway Components: glutathione_Ext - CydD-CydC -> glutathione
Components:
Function Name Type
catalyzer CydD-CydC complex
product glutathione simple_molecule
reactant glutathione_Ext simple_molecule
CydD-CydC cysteine_Ext cysteine
Name: cysteine_Ext -> cysteine
Description: Transport of cysteine_Ext through a bacterial membrane, leading to the presence of cysteine inside the cell.
Type: transport
Pathway Components: cysteine_Ext - CydD-CydC -> cysteine
Components:
Function Name Type
catalyzer CydD-CydC complex
product cysteine simple_molecule
reactant cysteine_Ext simple_molecule
cydDC_mRNA CydC
Name: cydDC_mRNA -> CydC
Description: Translation of CydC
Type: translation
Pathway Components: cydDC_mRNA -> CydC
Components:
Function Name Type
product CydC protein
reactant cydDC_mRNA RNA
torCAD_mRNA TorC
Name: torCAD_mRNA -> TorC
Description: Translation of TorC
Type: translation
Pathway Components: torCAD_mRNA -> TorC
Components:
Function Name Type
product TorC protein
reactant torCAD_mRNA RNA
TorA + TorC TorC-TorA
Name: TorA + TorC -> TorC-TorA
Description: Reaction transforming TorA, TorC into TorC-TorA
Type: state transition
Pathway Components: TorA + TorC -> TorC-TorA
Components:
Function Name Type
reactant TorA protein
reactant TorC protein
product TorC-TorA complex
TorC-TorA menaquinol + TMAO vitamin K2 + (CH3)3NH
Name: menaquinol + TMAO -> vitamin K2 + (CH3)3NH
Description: Reaction transforming menaquinol, TMAO into vitamin K2, (CH3)3NH
Type: state transition
Pathway Components: menaquinol + TMAO - TorC-TorA -> vitamin K2 + (CH3)3NH
Components:
Function Name Type
product (CH3)3NH simple_molecule
reactant TMAO simple_molecule
catalyzer TorC-TorA complex
reactant menaquinol simple_molecule
product vitamin K2 simple_molecule
torCAD_mRNA TorA
Name: torCAD_mRNA -> TorA
Description: Translation of TorA
Type: translation
Pathway Components: torCAD_mRNA -> TorA
Components:
Function Name Type
product TorA protein
reactant torCAD_mRNA RNA
TorA a-reduced-TorC-protein + TMAO an-oxidized-TorC-protein + (CH3)3NH
Name: a-reduced-TorC-protein + TMAO -> an-oxidized-TorC-protein + (CH3)3NH
Description: Reaction transforming a-reduced-TorC-protein, TMAO into an-oxidized-TorC-protein, (CH3)3NH
Type: state transition
Pathway Components: a-reduced-TorC-protein + TMAO - TorA -> an-oxidized-TorC-protein + (CH3)3NH
Components:
Function Name Type
product (CH3)3NH simple_molecule
reactant TMAO simple_molecule
catalyzer TorA protein
reactant a-reduced-TorC-protein simple_molecule
product an-oxidized-TorC-protein simple_molecule
torCAD_mRNA TorD
Name: torCAD_mRNA -> TorD
Description: Translation of TorD
Type: translation
Pathway Components: torCAD_mRNA -> TorD
Components:
Function Name Type
product TorD protein
reactant torCAD_mRNA RNA
frdABCD_mRNA FrdA
Name: frdABCD_mRNA -> FrdA
Description: Translation of FrdA
Type: translation
Pathway Components: frdABCD_mRNA -> FrdA
Components:
Function Name Type
product FrdA protein
reactant frdABCD_mRNA RNA
FrdC + FrdD + FrdA + FrdB FrdA-FrdB-FrdC-FrdD
Name: FrdC + FrdD + FrdA + FrdB -> FrdA-FrdB-FrdC-FrdD
Description: Reaction transforming FrdC, FrdD, FrdA, FrdB into FrdA-FrdB-FrdC-FrdD
Type: state transition
Pathway Components: FrdC + FrdD + FrdA + FrdB -> FrdA-FrdB-FrdC-FrdD
Components:
Function Name Type
reactant FrdA protein
product FrdA-FrdB-FrdC-FrdD complex
reactant FrdB protein
reactant FrdC protein
reactant FrdD protein
FrdA-FrdB-FrdC-FrdD oxalacetate menaquinol + fumarate vitamin K2 + succinate
Name: menaquinol + fumarate -> vitamin K2 + succinate
Description: Reaction transforming menaquinol, fumarate into vitamin K2, succinate
Type: state transition
Pathway Components: menaquinol + fumarate - FrdA-FrdB-FrdC-FrdD - oxalacetate -> vitamin K2 + succinate
Components:
Function Name Type
catalyzer FrdA-FrdB-FrdC-FrdD complex
reactant fumarate simple_molecule
reactant menaquinol simple_molecule
inhibitor oxalacetate simple_molecule
product succinate simple_molecule
product vitamin K2 simple_molecule
frdABCD_mRNA FrdB
Name: frdABCD_mRNA -> FrdB
Description: Translation of FrdB
Type: translation
Pathway Components: frdABCD_mRNA -> FrdB
Components:
Function Name Type
product FrdB protein
reactant frdABCD_mRNA RNA
frdABCD_mRNA FrdC
Name: frdABCD_mRNA -> FrdC
Description: Translation of FrdC
Type: translation
Pathway Components: frdABCD_mRNA -> FrdC
Components:
Function Name Type
product FrdC protein
reactant frdABCD_mRNA RNA
frdABCD_mRNA FrdD
Name: frdABCD_mRNA -> FrdD
Description: Translation of FrdD
Type: translation
Pathway Components: frdABCD_mRNA -> FrdD
Components:
Function Name Type
product FrdD protein
reactant frdABCD_mRNA RNA
ubiCA_mRNA UbiC
Name: ubiCA_mRNA -> UbiC
Description: Translation of UbiC
Type: translation
Pathway Components: ubiCA_mRNA -> UbiC
Components:
Function Name Type
product UbiC protein
reactant ubiCA_mRNA RNA
4-hydroxybenzoate UbiC chorismate 4-hydroxybenzoate + pyruvate
Name: chorismate -> 4-hydroxybenzoate + pyruvate
Description: Reaction transforming chorismate into 4-hydroxybenzoate, pyruvate
Type: state transition
Pathway Components: chorismate - UbiC - 4-hydroxybenzoate -> 4-hydroxybenzoate + pyruvate
Components:
Function Name Type
inhibitor 4-hydroxybenzoate simple_molecule
product 4-hydroxybenzoate simple_molecule
catalyzer UbiC protein
reactant chorismate simple_molecule
product pyruvate simple_molecule
ubiCA_mRNA UbiA
Name: ubiCA_mRNA -> UbiA
Description: Translation of UbiA
Type: translation
Pathway Components: ubiCA_mRNA -> UbiA
Components:
Function Name Type
product UbiA protein
reactant ubiCA_mRNA RNA
UbiA octaprenyl diphosphate + 4-hydroxybenzoate 3-octaprenyl-4-hydroxybenzoate + diphosphate
Name: octaprenyl diphosphate + 4-hydroxybenzoate -> 3-octaprenyl-4-hydroxybenzoate + diphosphate
Description: Reaction transforming octaprenyl diphosphate, 4-hydroxybenzoate into 3-octaprenyl-4-hydroxybenzoate, diphosphate
Type: state transition
Pathway Components: octaprenyl diphosphate + 4-hydroxybenzoate - UbiA -> 3-octaprenyl-4-hydroxybenzoate + diphosphate
Components:
Function Name Type
product 3-octaprenyl-4-hydroxybenzoate simple_molecule
reactant 4-hydroxybenzoate simple_molecule
catalyzer UbiA protein
product diphosphate simple_molecule
reactant octaprenyl diphosphate simple_molecule
dcuB-fumB_mRNA DcuB
Name: dcuB-fumB_mRNA -> DcuB
Description: Translation of DcuB
Type: translation
Pathway Components: dcuB-fumB_mRNA -> DcuB
Components:
Function Name Type
product DcuB protein
reactant dcuB-fumB_mRNA RNA
DcuB succinate_Ext + tartrate_Ext succinate + tartrate
Name: succinate_Ext + tartrate_Ext -> succinate + tartrate
Description: Transport of succinate_Ext, tartrate_Ext through a bacterial membrane, leading to the presence of succinate, tartrate inside the cell.
Type: transport
Pathway Components: succinate_Ext + tartrate_Ext - DcuB -> succinate + tartrate
Components:
Function Name Type
catalyzer DcuB protein
product succinate simple_molecule
reactant succinate_Ext simple_molecule
product tartrate simple_molecule
reactant tartrate_Ext simple_molecule
dcuB-fumB_mRNA FumB
Name: dcuB-fumB_mRNA -> FumB
Description: Translation of FumB
Type: translation
Pathway Components: dcuB-fumB_mRNA -> FumB
Components:
Function Name Type
product FumB protein
reactant dcuB-fumB_mRNA RNA
FumB malate fumarate
Name: malate -> fumarate
Description: Reaction transforming malate into fumarate
Type: state transition
Pathway Components: malate - FumB -> fumarate
Components:
Function Name Type
catalyzer FumB protein
product fumarate simple_molecule
reactant malate simple_molecule
FumB tartrate oxalacetate
Name: tartrate -> oxalacetate
Description: Reaction transforming tartrate into oxalacetate
Type: state transition
Pathway Components: tartrate - FumB -> oxalacetate
Components:
Function Name Type
catalyzer FumB protein
product oxalacetate simple_molecule
reactant tartrate simple_molecule
norVW_mRNA NorV
Name: norVW_mRNA -> NorV
Description: Translation of NorV
Type: translation
Pathway Components: norVW_mRNA -> NorV
Components:
Function Name Type
product NorV protein
reactant norVW_mRNA RNA
norVW_mRNA FlRd
Name: norVW_mRNA -> FlRd
Description: Translation of FlRd
Type: translation
Pathway Components: norVW_mRNA -> FlRd
Components:
Function Name Type
product FlRd simple_molecule
reactant norVW_mRNA RNA
norVW_mRNA NorW
Name: norVW_mRNA -> NorW
Description: Translation of NorW
Type: translation
Pathway Components: norVW_mRNA -> NorW
Components:
Function Name Type
product NorW protein
reactant norVW_mRNA RNA
NorW oxidized flavorubredoxin FlRd
Name: oxidized flavorubredoxin -> FlRd
Description: Reaction transforming oxidized flavorubredoxin into FlRd
Type: state transition
Pathway Components: oxidized flavorubredoxin - NorW -> FlRd
Components:
Function Name Type
product FlRd simple_molecule
catalyzer NorW protein
reactant oxidized flavorubredoxin simple_molecule
nrfABCDEFG_mRNA NrfA
Name: nrfABCDEFG_mRNA -> NrfA
Description: Translation of NrfA
Type: translation
Pathway Components: nrfABCDEFG_mRNA -> NrfA
Components:
Function Name Type
product NrfA protein
reactant nrfABCDEFG_mRNA RNA
NrfA + NrfB NrfA-NrfB
Name: NrfA + NrfB -> NrfA-NrfB
Description: Reaction transforming NrfA, NrfB into NrfA-NrfB
Type: state transition
Pathway Components: NrfA + NrfB -> NrfA-NrfB
Components:
Function Name Type
reactant NrfA protein
product NrfA-NrfB complex
reactant NrfB protein
NrfA a-reduced-NrfB-protein + nitrite an-oxidized-NrfB-protein + ammonium
Name: a-reduced-NrfB-protein + nitrite -> an-oxidized-NrfB-protein + ammonium
Description: Reaction transforming a-reduced-NrfB-protein, nitrite into an-oxidized-NrfB-protein, ammonium
Type: state transition
Pathway Components: a-reduced-NrfB-protein + nitrite - NrfA -> an-oxidized-NrfB-protein + ammonium
Components:
Function Name Type
catalyzer NrfA protein
reactant a-reduced-NrfB-protein simple_molecule
product ammonium simple_molecule
product an-oxidized-NrfB-protein simple_molecule
reactant nitrite simple_molecule
nrfABCDEFG_mRNA NrfB
Name: nrfABCDEFG_mRNA -> NrfB
Description: Translation of NrfB
Type: translation
Pathway Components: nrfABCDEFG_mRNA -> NrfB
Components:
Function Name Type
product NrfB protein
reactant nrfABCDEFG_mRNA RNA
nrfABCDEFG_mRNA NrfC
Name: nrfABCDEFG_mRNA -> NrfC
Description: Translation of NrfC
Type: translation
Pathway Components: nrfABCDEFG_mRNA -> NrfC
Components:
Function Name Type
product NrfC protein
reactant nrfABCDEFG_mRNA RNA
NrfD + NrfC NrfD-NrfC
Name: NrfD + NrfC -> NrfD-NrfC
Description: Reaction transforming NrfD, NrfC into NrfD-NrfC
Type: state transition
Pathway Components: NrfD + NrfC -> NrfD-NrfC
Components:
Function Name Type
reactant NrfC protein
reactant NrfD protein
product NrfD-NrfC complex
NrfD-NrfC an-oxidized-NrfB-protein + menaquinol a-reduced-NrfB-protein + vitamin K2
Name: an-oxidized-NrfB-protein + menaquinol -> a-reduced-NrfB-protein + vitamin K2
Description: Reaction transforming an-oxidized-NrfB-protein, menaquinol into a-reduced-NrfB-protein, vitamin K2
Type: state transition
Pathway Components: an-oxidized-NrfB-protein + menaquinol - NrfD-NrfC -> a-reduced-NrfB-protein + vitamin K2
Components:
Function Name Type
catalyzer NrfD-NrfC complex
product a-reduced-NrfB-protein simple_molecule
reactant an-oxidized-NrfB-protein simple_molecule
reactant menaquinol simple_molecule
product vitamin K2 simple_molecule
nrfABCDEFG_mRNA NrfD
Name: nrfABCDEFG_mRNA -> NrfD
Description: Translation of NrfD
Type: translation
Pathway Components: nrfABCDEFG_mRNA -> NrfD
Components:
Function Name Type
product NrfD protein
reactant nrfABCDEFG_mRNA RNA
nrfABCDEFG_mRNA NrfE
Name: nrfABCDEFG_mRNA -> NrfE
Description: Translation of NrfE
Type: translation
Pathway Components: nrfABCDEFG_mRNA -> NrfE
Components:
Function Name Type
product NrfE protein
reactant nrfABCDEFG_mRNA RNA
nrfABCDEFG_mRNA NrfF
Name: nrfABCDEFG_mRNA -> NrfF
Description: Translation of NrfF
Type: translation
Pathway Components: nrfABCDEFG_mRNA -> NrfF
Components:
Function Name Type
product NrfF protein
reactant nrfABCDEFG_mRNA RNA
nrfABCDEFG_mRNA NrfG
Name: nrfABCDEFG_mRNA -> NrfG
Description: Translation of NrfG
Type: translation
Pathway Components: nrfABCDEFG_mRNA -> NrfG
Components:
Function Name Type
product NrfG protein
reactant nrfABCDEFG_mRNA RNA
Reactants H2Dtpp-mADP
Name: carboxy-adenylated small subunit of molybdopterin synthase -> H2Dtpp-mADP
Description: Transformation of carboxy-adenylated small subunit of molybdopterin synthase into H2Dtpp-mADP by one or more reactions not shown.
Type: complementary pathway reaction
Pathway Components: carboxy-adenylated small subunit of molybdopterin synthase / RXN-12473 / RXN-8342 / RXN-8344 / H2Dtpp-mADP
Components:
Function Name Type
product H2Dtpp-mADP simple_molecule
reactant carboxy-adenylated small subunit of molybdopterin synthase simple_molecule



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