Showing 248 reactions
phosphate + NarL
NarL-phosphate
Name:
phosphate + NarL -> NarL-phosphate
Description:
Reaction transforming phosphate, NarL into NarL-phosphate
Type:
state transition
Pathway Components:
phosphate + NarL -> NarL-phosphate
Components:
Function
Name
Type
reactant
NarL
protein
product
NarL-phosphate
complex
reactant
phosphate
simple_molecule
NarL-phosphate
cydDC
cydDC_mRNA
Name:
cydDC -> cydDC_mRNA
Description:
Transcription of transcription unit cydDC. Reaction activation by NarL-phosphate.
Type:
transcription
Pathway Components:
cydDC - NarL-phosphate -> cydDC_mRNA
Components:
Function
Name
Type
activator
NarL-phosphate
complex
reactant
cydDC
gene
product
cydDC_mRNA
RNA
NarL-phosphate
fdnGHI
fdnGHI_mRNA
Name:
fdnGHI -> fdnGHI_mRNA
Description:
Transcription of transcription unit fdnGHI. Reaction activation by NarL-phosphate.
Type:
transcription
Pathway Components:
fdnGHI - NarL-phosphate -> fdnGHI_mRNA
Components:
Function
Name
Type
activator
NarL-phosphate
complex
reactant
fdnGHI
gene
product
fdnGHI_mRNA
RNA
NarL-phosphate
hcp-hcr
hcp-hcr_mRNA
Name:
hcp-hcr -> hcp-hcr_mRNA
Description:
Transcription of transcription unit hcp-hcr. Reaction activation by NarL-phosphate.
Type:
transcription
Pathway Components:
hcp-hcr - NarL-phosphate -> hcp-hcr_mRNA
Components:
Function
Name
Type
activator
NarL-phosphate
complex
reactant
hcp-hcr
gene
product
hcp-hcr_mRNA
RNA
NarL-phosphate
hcp-hcr-poxB
hcp-hcr-poxB_mRNA
Name:
hcp-hcr-poxB -> hcp-hcr-poxB_mRNA
Description:
Transcription of transcription unit hcp-hcr-poxB. Reaction activation by NarL-phosphate.
Type:
transcription
Pathway Components:
hcp-hcr-poxB - NarL-phosphate -> hcp-hcr-poxB_mRNA
Components:
Function
Name
Type
activator
NarL-phosphate
complex
reactant
hcp-hcr-poxB
gene
product
hcp-hcr-poxB_mRNA
RNA
NarL-phosphate
moeAB
moeAB_mRNA
Name:
moeAB -> moeAB_mRNA
Description:
Transcription of transcription unit moeAB. Reaction activation by NarL-phosphate.
Type:
transcription
Pathway Components:
moeAB - NarL-phosphate -> moeAB_mRNA
Components:
Function
Name
Type
activator
NarL-phosphate
complex
reactant
moeAB
gene
product
moeAB_mRNA
RNA
NarL-phosphate
narGHJI
narGHJI_mRNA
Name:
narGHJI -> narGHJI_mRNA
Description:
Transcription of transcription unit narGHJI. Reaction activation by NarL-phosphate.
Type:
transcription
Pathway Components:
narGHJI - NarL-phosphate -> narGHJI_mRNA
Components:
Function
Name
Type
activator
NarL-phosphate
complex
reactant
narGHJI
gene
product
narGHJI_mRNA
RNA
NarL-phosphate
narK
narK_mRNA
Name:
narK -> narK_mRNA
Description:
Transcription of transcription unit narK. Reaction activation by NarL-phosphate.
Type:
transcription
Pathway Components:
narK - NarL-phosphate -> narK_mRNA
Components:
Function
Name
Type
activator
NarL-phosphate
complex
reactant
narK
gene
product
narK_mRNA
RNA
NarL-phosphate
nirBDC-cysG
nirBDC-cysG_mRNA
Name:
nirBDC-cysG -> nirBDC-cysG_mRNA
Description:
Transcription of transcription unit nirBDC-cysG. Reaction activation by NarL-phosphate.
Type:
transcription
Pathway Components:
nirBDC-cysG - NarL-phosphate -> nirBDC-cysG_mRNA
Components:
Function
Name
Type
activator
NarL-phosphate
complex
reactant
nirBDC-cysG
gene
product
nirBDC-cysG_mRNA
RNA
NarL-phosphate
NarL-phosphate
nrfABCDEFG
nrfABCDEFG_mRNA
Name:
nrfABCDEFG -> nrfABCDEFG_mRNA
Description:
Transcription of transcription unit nrfABCDEFG. Reaction activation by NarL-phosphate. Reaction inhibition by NarL-phosphate.
Type:
transcription
Pathway Components:
nrfABCDEFG - NarL-phosphate - NarL-phosphate -> nrfABCDEFG_mRNA
Components:
Function
Name
Type
activator
NarL-phosphate
complex
inhibitor
NarL-phosphate
complex
reactant
nrfABCDEFG
gene
product
nrfABCDEFG_mRNA
RNA
NarL-phosphate
nuoABCEFGHIJKLMN
nuoABCEFGHIJKLMN_mRNA
Name:
nuoABCEFGHIJKLMN -> nuoABCEFGHIJKLMN_mRNA
Description:
Transcription of transcription unit nuoABCEFGHIJKLMN. Reaction activation by NarL-phosphate.
Type:
transcription
Pathway Components:
nuoABCEFGHIJKLMN - NarL-phosphate -> nuoABCEFGHIJKLMN_mRNA
Components:
Function
Name
Type
activator
NarL-phosphate
complex
reactant
nuoABCEFGHIJKLMN
gene
product
nuoABCEFGHIJKLMN_mRNA
RNA
NarL-phosphate
ogt
ogt_mRNA
Name:
ogt -> ogt_mRNA
Description:
Transcription of transcription unit ogt. Reaction activation by NarL-phosphate.
Type:
transcription
Pathway Components:
ogt - NarL-phosphate -> ogt_mRNA
Components:
Function
Name
Type
activator
NarL-phosphate
complex
reactant
ogt
gene
product
ogt_mRNA
RNA
NarL-phosphate
ydeP
ydeP_mRNA
Name:
ydeP -> ydeP_mRNA
Description:
Transcription of transcription unit ydeP. Reaction activation by NarL-phosphate.
Type:
transcription
Pathway Components:
ydeP - NarL-phosphate -> ydeP_mRNA
Components:
Function
Name
Type
activator
NarL-phosphate
complex
reactant
ydeP
gene
product
ydeP_mRNA
RNA
NarL-phosphate
yeaR-yoaG
yeaR-yoaG_mRNA
Name:
yeaR-yoaG -> yeaR-yoaG_mRNA
Description:
Transcription of transcription unit yeaR-yoaG. Reaction activation by NarL-phosphate.
Type:
transcription
Pathway Components:
yeaR-yoaG - NarL-phosphate -> yeaR-yoaG_mRNA
Components:
Function
Name
Type
activator
NarL-phosphate
complex
reactant
yeaR-yoaG
gene
product
yeaR-yoaG_mRNA
RNA
NarL-phosphate
ytfE
ytfE_mRNA
Name:
ytfE -> ytfE_mRNA
Description:
Transcription of transcription unit ytfE. Reaction activation by NarL-phosphate.
Type:
transcription
Pathway Components:
ytfE - NarL-phosphate -> ytfE_mRNA
Components:
Function
Name
Type
activator
NarL-phosphate
complex
reactant
ytfE
gene
product
ytfE_mRNA
RNA
NarL-phosphate
adhE
adhE_mRNA
Name:
adhE -> adhE_mRNA
Description:
Transcription of transcription unit adhE. Reaction inhibition by NarL-phosphate.
Type:
transcription
Pathway Components:
adhE - NarL-phosphate -> adhE_mRNA
Components:
Function
Name
Type
inhibitor
NarL-phosphate
complex
reactant
adhE
gene
product
adhE_mRNA
RNA
NarL-phosphate
aspA
aspA_mRNA
Name:
aspA -> aspA_mRNA
Description:
Transcription of transcription unit aspA. Reaction inhibition by NarL-phosphate.
Type:
transcription
Pathway Components:
aspA - NarL-phosphate -> aspA_mRNA
Components:
Function
Name
Type
inhibitor
NarL-phosphate
complex
reactant
aspA
gene
product
aspA_mRNA
RNA
NarL-phosphate
aspA-dcuA
aspA-dcuA_mRNA
Name:
aspA-dcuA -> aspA-dcuA_mRNA
Description:
Transcription of transcription unit aspA-dcuA. Reaction inhibition by NarL-phosphate.
Type:
transcription
Pathway Components:
aspA-dcuA - NarL-phosphate -> aspA-dcuA_mRNA
Components:
Function
Name
Type
inhibitor
NarL-phosphate
complex
reactant
aspA-dcuA
gene
product
aspA-dcuA_mRNA
RNA
NarL-phosphate
caiF
caiF_mRNA
Name:
caiF -> caiF_mRNA
Description:
Transcription of transcription unit caiF. Reaction inhibition by NarL-phosphate.
Type:
transcription
Pathway Components:
caiF - NarL-phosphate -> caiF_mRNA
Components:
Function
Name
Type
inhibitor
NarL-phosphate
complex
reactant
caiF
gene
product
caiF_mRNA
RNA
NarL-phosphate
citCDEFXG
citCDEFXG_mRNA
Name:
citCDEFXG -> citCDEFXG_mRNA
Description:
Transcription of transcription unit citCDEFXG. Reaction inhibition by NarL-phosphate.
Type:
transcription
Pathway Components:
citCDEFXG - NarL-phosphate -> citCDEFXG_mRNA
Components:
Function
Name
Type
inhibitor
NarL-phosphate
complex
reactant
citCDEFXG
gene
product
citCDEFXG_mRNA
RNA
NarL-phosphate
dcuB-fumB
dcuB-fumB_mRNA
Name:
dcuB-fumB -> dcuB-fumB_mRNA
Description:
Transcription of transcription unit dcuB-fumB. Reaction inhibition by NarL-phosphate.
Type:
transcription
Pathway Components:
dcuB-fumB - NarL-phosphate -> dcuB-fumB_mRNA
Components:
Function
Name
Type
inhibitor
NarL-phosphate
complex
reactant
dcuB-fumB
gene
product
dcuB-fumB_mRNA
RNA
NarL-phosphate
dcuSR
dcuSR_mRNA
Name:
dcuSR -> dcuSR_mRNA
Description:
Transcription of transcription unit dcuSR. Reaction inhibition by NarL-phosphate.
Type:
transcription
Pathway Components:
dcuSR - NarL-phosphate -> dcuSR_mRNA
Components:
Function
Name
Type
inhibitor
NarL-phosphate
complex
reactant
dcuSR
gene
product
dcuSR_mRNA
RNA
NarL-phosphate
dmsABC
dmsABC_mRNA
Name:
dmsABC -> dmsABC_mRNA
Description:
Transcription of transcription unit dmsABC. Reaction inhibition by NarL-phosphate.
Type:
transcription
Pathway Components:
dmsABC - NarL-phosphate -> dmsABC_mRNA
Components:
Function
Name
Type
inhibitor
NarL-phosphate
complex
reactant
dmsABC
gene
product
dmsABC_mRNA
RNA
NarL-phosphate
dpiBA
dpiBA_mRNA
Name:
dpiBA -> dpiBA_mRNA
Description:
Transcription of transcription unit dpiBA. Reaction inhibition by NarL-phosphate.
Type:
transcription
Pathway Components:
dpiBA - NarL-phosphate -> dpiBA_mRNA
Components:
Function
Name
Type
inhibitor
NarL-phosphate
complex
reactant
dpiBA
gene
product
dpiBA_mRNA
RNA
NarL-phosphate
fdhF
fdhF_mRNA
Name:
fdhF -> fdhF_mRNA
Description:
Transcription of transcription unit fdhF. Reaction inhibition by NarL-phosphate.
Type:
transcription
Pathway Components:
fdhF - NarL-phosphate -> fdhF_mRNA
Components:
Function
Name
Type
inhibitor
NarL-phosphate
complex
reactant
fdhF
gene
product
fdhF_mRNA
RNA
NarL-phosphate
focA-pflB
focA-pflB_mRNA
Name:
focA-pflB -> focA-pflB_mRNA
Description:
Transcription of transcription unit focA-pflB. Reaction inhibition by NarL-phosphate.
Type:
transcription
Pathway Components:
focA-pflB - NarL-phosphate -> focA-pflB_mRNA
Components:
Function
Name
Type
inhibitor
NarL-phosphate
complex
reactant
focA-pflB
gene
product
focA-pflB_mRNA
RNA
NarL-phosphate
frdABCD
frdABCD_mRNA
Name:
frdABCD -> frdABCD_mRNA
Description:
Transcription of transcription unit frdABCD. Reaction inhibition by NarL-phosphate.
Type:
transcription
Pathway Components:
frdABCD - NarL-phosphate -> frdABCD_mRNA
Components:
Function
Name
Type
inhibitor
NarL-phosphate
complex
reactant
frdABCD
gene
product
frdABCD_mRNA
RNA
NarL-phosphate
hyaABCDEF
hyaABCDEF_mRNA
Name:
hyaABCDEF -> hyaABCDEF_mRNA
Description:
Transcription of transcription unit hyaABCDEF. Reaction inhibition by NarL-phosphate.
Type:
transcription
Pathway Components:
hyaABCDEF - NarL-phosphate -> hyaABCDEF_mRNA
Components:
Function
Name
Type
inhibitor
NarL-phosphate
complex
reactant
hyaABCDEF
gene
product
hyaABCDEF_mRNA
RNA
NarL-phosphate
hybOABCDEFG
hybOABCDEFG_mRNA
Name:
hybOABCDEFG -> hybOABCDEFG_mRNA
Description:
Transcription of transcription unit hybOABCDEFG. Reaction inhibition by NarL-phosphate.
Type:
transcription
Pathway Components:
hybOABCDEFG - NarL-phosphate -> hybOABCDEFG_mRNA
Components:
Function
Name
Type
inhibitor
NarL-phosphate
complex
reactant
hybOABCDEFG
gene
product
hybOABCDEFG_mRNA
RNA
NarL-phosphate
napFDAGHBC-ccmABCDEFGH
napFDAGHBC-ccmABCDEFGH_mRNA
Name:
napFDAGHBC-ccmABCDEFGH -> napFDAGHBC-ccmABCDEFGH_mRNA
Description:
Transcription of transcription unit napFDAGHBC-ccmABCDEFGH. Reaction inhibition by NarL-phosphate.
Type:
transcription
Pathway Components:
napFDAGHBC-ccmABCDEFGH - NarL-phosphate -> napFDAGHBC-ccmABCDEFGH_mRNA
Components:
Function
Name
Type
inhibitor
NarL-phosphate
complex
reactant
napFDAGHBC-ccmABCDEFGH
gene
product
napFDAGHBC-ccmABCDEFGH_mRNA
RNA
NarL-phosphate
nikABCDER
nikABCDER_mRNA
Name:
nikABCDER -> nikABCDER_mRNA
Description:
Transcription of transcription unit nikABCDER. Reaction inhibition by NarL-phosphate.
Type:
transcription
Pathway Components:
nikABCDER - NarL-phosphate -> nikABCDER_mRNA
Components:
Function
Name
Type
inhibitor
NarL-phosphate
complex
reactant
nikABCDER
gene
product
nikABCDER_mRNA
RNA
NarL-phosphate
norVW
norVW_mRNA
Name:
norVW -> norVW_mRNA
Description:
Transcription of transcription unit norVW. Reaction inhibition by NarL-phosphate.
Type:
transcription
Pathway Components:
norVW - NarL-phosphate -> norVW_mRNA
Components:
Function
Name
Type
inhibitor
NarL-phosphate
complex
reactant
norVW
gene
product
norVW_mRNA
RNA
NarL-phosphate
ompW
ompW_mRNA
Name:
ompW -> ompW_mRNA
Description:
Transcription of transcription unit ompW. Reaction inhibition by NarL-phosphate.
Type:
transcription
Pathway Components:
ompW - NarL-phosphate -> ompW_mRNA
Components:
Function
Name
Type
inhibitor
NarL-phosphate
complex
reactant
ompW
gene
product
ompW_mRNA
RNA
NarL-phosphate
torCAD
torCAD_mRNA
Name:
torCAD -> torCAD_mRNA
Description:
Transcription of transcription unit torCAD. Reaction inhibition by NarL-phosphate.
Type:
transcription
Pathway Components:
torCAD - NarL-phosphate -> torCAD_mRNA
Components:
Function
Name
Type
inhibitor
NarL-phosphate
complex
reactant
torCAD
gene
product
torCAD_mRNA
RNA
NarL-phosphate
ubiCA
ubiCA_mRNA
Name:
ubiCA -> ubiCA_mRNA
Description:
Transcription of transcription unit ubiCA. Reaction inhibition by NarL-phosphate.
Type:
transcription
Pathway Components:
ubiCA - NarL-phosphate -> ubiCA_mRNA
Components:
Function
Name
Type
inhibitor
NarL-phosphate
complex
reactant
ubiCA
gene
product
ubiCA_mRNA
RNA
NarL-phosphate
ydhYVWXUT
ydhYVWXUT_mRNA
Name:
ydhYVWXUT -> ydhYVWXUT_mRNA
Description:
Transcription of transcription unit ydhYVWXUT. Reaction inhibition by NarL-phosphate.
Type:
transcription
Pathway Components:
ydhYVWXUT - NarL-phosphate -> ydhYVWXUT_mRNA
Components:
Function
Name
Type
inhibitor
NarL-phosphate
complex
reactant
ydhYVWXUT
gene
product
ydhYVWXUT_mRNA
RNA
NarL-phosphate
ynfEFGH-dmsD
ynfEFGH-dmsD_mRNA
Name:
ynfEFGH-dmsD -> ynfEFGH-dmsD_mRNA
Description:
Transcription of transcription unit ynfEFGH-dmsD. Reaction inhibition by NarL-phosphate.
Type:
transcription
Pathway Components:
ynfEFGH-dmsD - NarL-phosphate -> ynfEFGH-dmsD_mRNA
Components:
Function
Name
Type
inhibitor
NarL-phosphate
complex
reactant
ynfEFGH-dmsD
gene
product
ynfEFGH-dmsD_mRNA
RNA
focA-pflB_mRNA
FocA
Name:
focA-pflB_mRNA -> FocA
Description:
Translation of FocA
Type:
translation
Pathway Components:
focA-pflB_mRNA -> FocA
Components:
Function
Name
Type
product
FocA
protein
reactant
focA-pflB_mRNA
RNA
FocA
formate_Ext
formate
Name:
formate_Ext -> formate
Description:
Transport of formate_Ext through a bacterial membrane, leading to the presence of formate inside the cell.
Type:
transport
Pathway Components:
formate_Ext - FocA -> formate
Components:
Function
Name
Type
catalyzer
FocA
protein
product
formate
simple_molecule
reactant
formate_Ext
simple_molecule
focA-pflB_mRNA
PflB
Name:
focA-pflB_mRNA -> PflB
Description:
Translation of PflB
Type:
translation
Pathway Components:
focA-pflB_mRNA -> PflB
Components:
Function
Name
Type
product
PflB
protein
reactant
focA-pflB_mRNA
RNA
PflB
coenzyme A + pyruvate
acetyl-CoA + formate
Name:
coenzyme A + pyruvate -> acetyl-CoA + formate
Description:
Reaction transforming coenzyme A, pyruvate into acetyl-CoA, formate
Type:
state transition
Pathway Components:
coenzyme A + pyruvate - PflB -> acetyl-CoA + formate
Components:
Function
Name
Type
catalyzer
PflB
protein
product
acetyl-CoA
simple_molecule
reactant
coenzyme A
simple_molecule
product
formate
simple_molecule
reactant
pyruvate
simple_molecule
PflB
2-oxobutyrate + coenzyme A
propanoyl-CoA + formate
Name:
2-oxobutyrate + coenzyme A -> propanoyl-CoA + formate
Description:
Reaction transforming 2-oxobutyrate, coenzyme A into propanoyl-CoA, formate
Type:
state transition
Pathway Components:
2-oxobutyrate + coenzyme A - PflB -> propanoyl-CoA + formate
Components:
Function
Name
Type
reactant
2-oxobutyrate
simple_molecule
catalyzer
PflB
protein
reactant
coenzyme A
simple_molecule
product
formate
simple_molecule
product
propanoyl-CoA
simple_molecule
nikABCDER_mRNA
NikA
Name:
nikABCDER_mRNA -> NikA
Description:
Translation of NikA
Type:
translation
Pathway Components:
nikABCDER_mRNA -> NikA
Components:
Function
Name
Type
product
NikA
protein
reactant
nikABCDER_mRNA
RNA
NikA + NikD + NikB + NikE + NikC
NikD-NikE-NikB-NikC-NikA
Name:
NikA + NikD + NikB + NikE + NikC -> NikD-NikE-NikB-NikC-NikA
Description:
Reaction transforming NikA, NikD, NikB, NikE, NikC into NikD-NikE-NikB-NikC-NikA
Type:
state transition
Pathway Components:
NikA + NikD + NikB + NikE + NikC -> NikD-NikE-NikB-NikC-NikA
Components:
Function
Name
Type
reactant
NikA
protein
reactant
NikB
protein
reactant
NikC
protein
reactant
NikD
protein
product
NikD-NikE-NikB-NikC-NikA
complex
reactant
NikE
protein
NikD-NikE-NikB-NikC-NikA
nickel_Ext
nickel
Name:
nickel_Ext -> nickel
Description:
Transport of nickel_Ext through a bacterial membrane, leading to the presence of nickel inside the cell.
Type:
transport
Pathway Components:
nickel_Ext - NikD-NikE-NikB-NikC-NikA -> nickel
Components:
Function
Name
Type
catalyzer
NikD-NikE-NikB-NikC-NikA
complex
product
nickel
simple_molecule
reactant
nickel_Ext
simple_molecule
nikABCDER_mRNA
NikB
Name:
nikABCDER_mRNA -> NikB
Description:
Translation of NikB
Type:
translation
Pathway Components:
nikABCDER_mRNA -> NikB
Components:
Function
Name
Type
product
NikB
protein
reactant
nikABCDER_mRNA
RNA
nikABCDER_mRNA
NikC
Name:
nikABCDER_mRNA -> NikC
Description:
Translation of NikC
Type:
translation
Pathway Components:
nikABCDER_mRNA -> NikC
Components:
Function
Name
Type
product
NikC
protein
reactant
nikABCDER_mRNA
RNA
nikABCDER_mRNA
NikD
Name:
nikABCDER_mRNA -> NikD
Description:
Translation of NikD
Type:
translation
Pathway Components:
nikABCDER_mRNA -> NikD
Components:
Function
Name
Type
product
NikD
protein
reactant
nikABCDER_mRNA
RNA
nikABCDER_mRNA
NikE
Name:
nikABCDER_mRNA -> NikE
Description:
Translation of NikE
Type:
translation
Pathway Components:
nikABCDER_mRNA -> NikE
Components:
Function
Name
Type
product
NikE
protein
reactant
nikABCDER_mRNA
RNA
nikABCDER_mRNA
NikR
Name:
nikABCDER_mRNA -> NikR
Description:
Translation of NikR
Type:
translation
Pathway Components:
nikABCDER_mRNA -> NikR
Components:
Function
Name
Type
product
NikR
protein
reactant
nikABCDER_mRNA
RNA
ydeP_mRNA
YdeP
Name:
ydeP_mRNA -> YdeP
Description:
Translation of YdeP
Type:
translation
Pathway Components:
ydeP_mRNA -> YdeP
Components:
Function
Name
Type
product
YdeP
protein
reactant
ydeP_mRNA
RNA
nuoABCEFGHIJKLMN_mRNA
NuoA
Name:
nuoABCEFGHIJKLMN_mRNA -> NuoA
Description:
Translation of NuoA
Type:
translation
Pathway Components:
nuoABCEFGHIJKLMN_mRNA -> NuoA
Components:
Function
Name
Type
product
NuoA
protein
reactant
nuoABCEFGHIJKLMN_mRNA
RNA
Protein Monomers
Protein complex
Name:
NuoL + NuoN + NuoF + NuoE + NuoK + NuoJ + NuoC + NuoA + NuoH + NuoB + NuoI + NuoM + NuoG -> NuoA-NuoH-NuoJ-NuoK-NuoL-NuoM-NuoN-NuoI-NuoG-NuoF-NuoE-NuoC-NuoB
Description:
Reaction transforming NuoL, NuoN, NuoF, NuoE, NuoK, NuoJ, NuoC, NuoA, NuoH, NuoB, NuoI, NuoM, NuoG into NuoA-NuoH-NuoJ-NuoK-NuoL-NuoM-NuoN-NuoI-NuoG-NuoF-NuoE-NuoC-NuoB
Type:
state transition
Pathway Components:
NuoL + NuoN + NuoF + NuoE + NuoK + NuoJ + NuoC + NuoA + NuoH + NuoB + NuoI + NuoM + NuoG -> NuoA-NuoH-NuoJ-NuoK-NuoL-NuoM-NuoN-NuoI-NuoG-NuoF-NuoE-NuoC-NuoB
Components:
Show/Hide Components Table
Function
Name
Type
reactant
NuoA
protein
product
NuoA-NuoH-NuoJ-NuoK-NuoL-NuoM-NuoN-NuoI-NuoG-NuoF-NuoE-NuoC-NuoB
complex
reactant
NuoB
protein
reactant
NuoC
protein
reactant
NuoE
protein
reactant
NuoF
protein
reactant
NuoG
protein
reactant
NuoH
protein
reactant
NuoI
protein
reactant
NuoJ
protein
reactant
NuoK
protein
reactant
NuoL
protein
reactant
NuoM
protein
reactant
NuoN
protein
Catalyzer
ubiquinone_Ext
ubiquinol
Name:
ubiquinone_Ext -> ubiquinol
Description:
Transport of ubiquinone_Ext through a bacterial membrane, leading to the presence of ubiquinol inside the cell.
Type:
transport
Pathway Components:
ubiquinone_Ext - NuoA-NuoH-NuoJ-NuoK-NuoL-NuoM-NuoN-NuoI-NuoG-NuoF-NuoE-NuoC-NuoB -> ubiquinol
Components:
Function
Name
Type
catalyzer
NuoA-NuoH-NuoJ-NuoK-NuoL-NuoM-NuoN-NuoI-NuoG-NuoF-NuoE-NuoC-NuoB
complex
product
ubiquinol
simple_molecule
reactant
ubiquinone_Ext
simple_molecule
Catalyzer
vitamin K2_Ext
menaquinol
Name:
vitamin K2_Ext -> menaquinol
Description:
Transport of vitamin K2_Ext through a bacterial membrane, leading to the presence of menaquinol inside the cell.
Type:
transport
Pathway Components:
vitamin K2_Ext - NuoA-NuoH-NuoJ-NuoK-NuoL-NuoM-NuoN-NuoI-NuoG-NuoF-NuoE-NuoC-NuoB -> menaquinol
Components:
Function
Name
Type
catalyzer
NuoA-NuoH-NuoJ-NuoK-NuoL-NuoM-NuoN-NuoI-NuoG-NuoF-NuoE-NuoC-NuoB
complex
product
menaquinol
simple_molecule
reactant
vitamin K2_Ext
simple_molecule
nuoABCEFGHIJKLMN_mRNA
NuoB
Name:
nuoABCEFGHIJKLMN_mRNA -> NuoB
Description:
Translation of NuoB
Type:
translation
Pathway Components:
nuoABCEFGHIJKLMN_mRNA -> NuoB
Components:
Function
Name
Type
product
NuoB
protein
reactant
nuoABCEFGHIJKLMN_mRNA
RNA
NuoI + NuoB + NuoF + NuoE + NuoC + NuoG
NuoB-NuoC-NuoE-NuoF-NuoG-NuoI
Name:
NuoI + NuoB + NuoF + NuoE + NuoC + NuoG -> NuoB-NuoC-NuoE-NuoF-NuoG-NuoI
Description:
Reaction transforming NuoI, NuoB, NuoF, NuoE, NuoC, NuoG into NuoB-NuoC-NuoE-NuoF-NuoG-NuoI
Type:
state transition
Pathway Components:
NuoI + NuoB + NuoF + NuoE + NuoC + NuoG -> NuoB-NuoC-NuoE-NuoF-NuoG-NuoI
Components:
Function
Name
Type
reactant
NuoB
protein
product
NuoB-NuoC-NuoE-NuoF-NuoG-NuoI
complex
reactant
NuoC
protein
reactant
NuoE
protein
reactant
NuoF
protein
reactant
NuoG
protein
reactant
NuoI
protein
nuoABCEFGHIJKLMN_mRNA
NuoC
Name:
nuoABCEFGHIJKLMN_mRNA -> NuoC
Description:
Translation of NuoC
Type:
translation
Pathway Components:
nuoABCEFGHIJKLMN_mRNA -> NuoC
Components:
Function
Name
Type
product
NuoC
protein
reactant
nuoABCEFGHIJKLMN_mRNA
RNA
nuoABCEFGHIJKLMN_mRNA
NuoE
Name:
nuoABCEFGHIJKLMN_mRNA -> NuoE
Description:
Translation of NuoE
Type:
translation
Pathway Components:
nuoABCEFGHIJKLMN_mRNA -> NuoE
Components:
Function
Name
Type
product
NuoE
protein
reactant
nuoABCEFGHIJKLMN_mRNA
RNA
nuoABCEFGHIJKLMN_mRNA
NuoF
Name:
nuoABCEFGHIJKLMN_mRNA -> NuoF
Description:
Translation of NuoF
Type:
translation
Pathway Components:
nuoABCEFGHIJKLMN_mRNA -> NuoF
Components:
Function
Name
Type
product
NuoF
protein
reactant
nuoABCEFGHIJKLMN_mRNA
RNA
nuoABCEFGHIJKLMN_mRNA
NuoG
Name:
nuoABCEFGHIJKLMN_mRNA -> NuoG
Description:
Translation of NuoG
Type:
translation
Pathway Components:
nuoABCEFGHIJKLMN_mRNA -> NuoG
Components:
Function
Name
Type
product
NuoG
protein
reactant
nuoABCEFGHIJKLMN_mRNA
RNA
nuoABCEFGHIJKLMN_mRNA
NuoH
Name:
nuoABCEFGHIJKLMN_mRNA -> NuoH
Description:
Translation of NuoH
Type:
translation
Pathway Components:
nuoABCEFGHIJKLMN_mRNA -> NuoH
Components:
Function
Name
Type
product
NuoH
protein
reactant
nuoABCEFGHIJKLMN_mRNA
RNA
nuoABCEFGHIJKLMN_mRNA
NuoI
Name:
nuoABCEFGHIJKLMN_mRNA -> NuoI
Description:
Translation of NuoI
Type:
translation
Pathway Components:
nuoABCEFGHIJKLMN_mRNA -> NuoI
Components:
Function
Name
Type
product
NuoI
protein
reactant
nuoABCEFGHIJKLMN_mRNA
RNA
nuoABCEFGHIJKLMN_mRNA
NuoJ
Name:
nuoABCEFGHIJKLMN_mRNA -> NuoJ
Description:
Translation of NuoJ
Type:
translation
Pathway Components:
nuoABCEFGHIJKLMN_mRNA -> NuoJ
Components:
Function
Name
Type
product
NuoJ
protein
reactant
nuoABCEFGHIJKLMN_mRNA
RNA
nuoABCEFGHIJKLMN_mRNA
NuoK
Name:
nuoABCEFGHIJKLMN_mRNA -> NuoK
Description:
Translation of NuoK
Type:
translation
Pathway Components:
nuoABCEFGHIJKLMN_mRNA -> NuoK
Components:
Function
Name
Type
product
NuoK
protein
reactant
nuoABCEFGHIJKLMN_mRNA
RNA
nuoABCEFGHIJKLMN_mRNA
NuoL
Name:
nuoABCEFGHIJKLMN_mRNA -> NuoL
Description:
Translation of NuoL
Type:
translation
Pathway Components:
nuoABCEFGHIJKLMN_mRNA -> NuoL
Components:
Function
Name
Type
product
NuoL
protein
reactant
nuoABCEFGHIJKLMN_mRNA
RNA
nuoABCEFGHIJKLMN_mRNA
NuoM
Name:
nuoABCEFGHIJKLMN_mRNA -> NuoM
Description:
Translation of NuoM
Type:
translation
Pathway Components:
nuoABCEFGHIJKLMN_mRNA -> NuoM
Components:
Function
Name
Type
product
NuoM
protein
reactant
nuoABCEFGHIJKLMN_mRNA
RNA
nuoABCEFGHIJKLMN_mRNA
NuoN
Name:
nuoABCEFGHIJKLMN_mRNA -> NuoN
Description:
Translation of NuoN
Type:
translation
Pathway Components:
nuoABCEFGHIJKLMN_mRNA -> NuoN
Components:
Function
Name
Type
product
NuoN
protein
reactant
nuoABCEFGHIJKLMN_mRNA
RNA
ogt_mRNA
Ogt
Name:
ogt_mRNA -> Ogt
Description:
Translation of Ogt
Type:
translation
Pathway Components:
ogt_mRNA -> Ogt
Components:
Function
Name
Type
product
Ogt
protein
reactant
ogt_mRNA
RNA
Ogt
Reactants
[protein]-S-methyl-L-cysteine + a-thymine-in-DNA
Name:
a modified nucleobase within DNA + peptide cysteine -> [protein]-S-methyl-L-cysteine + a-thymine-in-DNA
Description:
Reaction transforming a modified nucleobase within DNA, peptide cysteine into [protein]-S-methyl-L-cysteine, a-thymine-in-DNA
Type:
state transition
Pathway Components:
a modified nucleobase within DNA + peptide cysteine - Ogt -> [protein]-S-methyl-L-cysteine + a-thymine-in-DNA
Components:
Function
Name
Type
catalyzer
Ogt
protein
product
[protein]-S-methyl-L-cysteine
simple_molecule
reactant
a modified nucleobase within DNA
simple_molecule
product
a-thymine-in-DNA
simple_molecule
reactant
peptide cysteine
simple_molecule
Ogt
DNA 6-O-methylguanine + peptide cysteine
[protein]-S-methyl-L-cysteine + DNA guanine
Name:
DNA 6-O-methylguanine + peptide cysteine -> [protein]-S-methyl-L-cysteine + DNA guanine
Description:
Reaction transforming DNA 6-O-methylguanine, peptide cysteine into [protein]-S-methyl-L-cysteine, DNA guanine
Type:
state transition
Pathway Components:
DNA 6-O-methylguanine + peptide cysteine - Ogt -> [protein]-S-methyl-L-cysteine + DNA guanine
Components:
Function
Name
Type
reactant
DNA 6-O-methylguanine
simple_molecule
product
DNA guanine
simple_molecule
catalyzer
Ogt
protein
product
[protein]-S-methyl-L-cysteine
simple_molecule
reactant
peptide cysteine
simple_molecule
ompW_mRNA
OmpW
Name:
ompW_mRNA -> OmpW
Description:
Translation of OmpW
Type:
translation
Pathway Components:
ompW_mRNA -> OmpW
Components:
Function
Name
Type
product
OmpW
protein
reactant
ompW_mRNA
RNA
hybOABCDEFG_mRNA
HybO
Name:
hybOABCDEFG_mRNA -> HybO
Description:
Translation of HybO
Type:
translation
Pathway Components:
hybOABCDEFG_mRNA -> HybO
Components:
Function
Name
Type
product
HybO
protein
reactant
hybOABCDEFG_mRNA
RNA
HybO + HybA + HybC + HybB
HybA-HybB-HybO-HybC
Name:
HybO + HybA + HybC + HybB -> HybA-HybB-HybO-HybC
Description:
Reaction transforming HybO, HybA, HybC, HybB into HybA-HybB-HybO-HybC
Type:
state transition
Pathway Components:
HybO + HybA + HybC + HybB -> HybA-HybB-HybO-HybC
Components:
Function
Name
Type
reactant
HybA
protein
product
HybA-HybB-HybO-HybC
complex
reactant
HybB
protein
reactant
HybC
protein
reactant
HybO
protein
HybA-HybB-HybO-HybC
vitamin K2_Ext + hydrogen_Ext
menaquinol
Name:
vitamin K2_Ext + hydrogen_Ext -> menaquinol
Description:
Transport of vitamin K2_Ext, hydrogen_Ext through a bacterial membrane, leading to the presence of menaquinol inside the cell.
Type:
transport
Pathway Components:
vitamin K2_Ext + hydrogen_Ext - HybA-HybB-HybO-HybC -> menaquinol
Components:
Function
Name
Type
catalyzer
HybA-HybB-HybO-HybC
complex
reactant
hydrogen_Ext
simple_molecule
product
menaquinol
simple_molecule
reactant
vitamin K2_Ext
simple_molecule
hybOABCDEFG_mRNA
HybA
Name:
hybOABCDEFG_mRNA -> HybA
Description:
Translation of HybA
Type:
translation
Pathway Components:
hybOABCDEFG_mRNA -> HybA
Components:
Function
Name
Type
product
HybA
protein
reactant
hybOABCDEFG_mRNA
RNA
hybOABCDEFG_mRNA
HybB
Name:
hybOABCDEFG_mRNA -> HybB
Description:
Translation of HybB
Type:
translation
Pathway Components:
hybOABCDEFG_mRNA -> HybB
Components:
Function
Name
Type
product
HybB
protein
reactant
hybOABCDEFG_mRNA
RNA
hybOABCDEFG_mRNA
HybC
Name:
hybOABCDEFG_mRNA -> HybC
Description:
Translation of HybC
Type:
translation
Pathway Components:
hybOABCDEFG_mRNA -> HybC
Components:
Function
Name
Type
product
HybC
protein
reactant
hybOABCDEFG_mRNA
RNA
hybOABCDEFG_mRNA
HybD
Name:
hybOABCDEFG_mRNA -> HybD
Description:
Translation of HybD
Type:
translation
Pathway Components:
hybOABCDEFG_mRNA -> HybD
Components:
Function
Name
Type
product
HybD
protein
reactant
hybOABCDEFG_mRNA
RNA
hybOABCDEFG_mRNA
HybE
Name:
hybOABCDEFG_mRNA -> HybE
Description:
Translation of HybE
Type:
translation
Pathway Components:
hybOABCDEFG_mRNA -> HybE
Components:
Function
Name
Type
product
HybE
protein
reactant
hybOABCDEFG_mRNA
RNA
hybOABCDEFG_mRNA
HybF
Name:
hybOABCDEFG_mRNA -> HybF
Description:
Translation of HybF
Type:
translation
Pathway Components:
hybOABCDEFG_mRNA -> HybF
Components:
Function
Name
Type
product
HybF
protein
reactant
hybOABCDEFG_mRNA
RNA
hybOABCDEFG_mRNA
HybG
Name:
hybOABCDEFG_mRNA -> HybG
Description:
Translation of HybG
Type:
translation
Pathway Components:
hybOABCDEFG_mRNA -> HybG
Components:
Function
Name
Type
product
HybG
protein
reactant
hybOABCDEFG_mRNA
RNA
aspA-dcuA_mRNA
AspA
Name:
aspA-dcuA_mRNA -> AspA
Description:
Translation of AspA
Type:
translation
Pathway Components:
aspA-dcuA_mRNA -> AspA
Components:
Function
Name
Type
product
AspA
protein
reactant
aspA-dcuA_mRNA
RNA
AspA
aspartate
aspartate
ammonium + fumarate
Name:
aspartate -> ammonium + fumarate
Description:
Reaction transforming aspartate into ammonium, fumarate
Type:
state transition
Pathway Components:
aspartate - AspA - aspartate -> ammonium + fumarate
Components:
Function
Name
Type
catalyzer
AspA
protein
product
ammonium
simple_molecule
inhibitor
aspartate
simple_molecule
reactant
aspartate
simple_molecule
product
fumarate
simple_molecule
aspA-dcuA_mRNA
DcuA
Name:
aspA-dcuA_mRNA -> DcuA
Description:
Translation of DcuA
Type:
translation
Pathway Components:
aspA-dcuA_mRNA -> DcuA
Components:
Function
Name
Type
product
DcuA
protein
reactant
aspA-dcuA_mRNA
RNA
DcuA
DcuB
succinate_Ext + fumarate_Ext
succinate + fumarate
Name:
succinate_Ext + fumarate_Ext -> succinate + fumarate
Description:
Transport of succinate_Ext, fumarate_Ext through a bacterial membrane, leading to the presence of succinate, fumarate inside the cell.
Type:
transport
Pathway Components:
succinate_Ext + fumarate_Ext - DcuA - DcuB -> succinate + fumarate
Components:
Function
Name
Type
catalyzer
DcuA
protein
catalyzer
DcuB
protein
product
fumarate
simple_molecule
reactant
fumarate_Ext
simple_molecule
product
succinate
simple_molecule
reactant
succinate_Ext
simple_molecule
DcuA
DcuB
succinate_Ext + malate_Ext
succinate + malate
Name:
succinate_Ext + malate_Ext -> succinate + malate
Description:
Transport of succinate_Ext, malate_Ext through a bacterial membrane, leading to the presence of succinate, malate inside the cell.
Type:
transport
Pathway Components:
succinate_Ext + malate_Ext - DcuA - DcuB -> succinate + malate
Components:
Function
Name
Type
catalyzer
DcuA
protein
catalyzer
DcuB
protein
product
malate
simple_molecule
reactant
malate_Ext
simple_molecule
product
succinate
simple_molecule
reactant
succinate_Ext
simple_molecule
DcuA
DcuB
aspartate_Ext + succinate_Ext
aspartate + succinate
Name:
aspartate_Ext + succinate_Ext -> aspartate + succinate
Description:
Transport of aspartate_Ext, succinate_Ext through a bacterial membrane, leading to the presence of aspartate, succinate inside the cell.
Type:
transport
Pathway Components:
aspartate_Ext + succinate_Ext - DcuA - DcuB -> aspartate + succinate
Components:
Function
Name
Type
catalyzer
DcuA
protein
catalyzer
DcuB
protein
product
aspartate
simple_molecule
reactant
aspartate_Ext
simple_molecule
product
succinate
simple_molecule
reactant
succinate_Ext
simple_molecule
DcuA
DcuB
fumarate_Ext
fumarate
Name:
fumarate_Ext -> fumarate
Description:
Transport of fumarate_Ext through a bacterial membrane, leading to the presence of fumarate inside the cell.
Type:
transport
Pathway Components:
fumarate_Ext - DcuA - DcuB -> fumarate
Components:
Function
Name
Type
catalyzer
DcuA
protein
catalyzer
DcuB
protein
product
fumarate
simple_molecule
reactant
fumarate_Ext
simple_molecule
dcuSR_mRNA
DcuS
Name:
dcuSR_mRNA -> DcuS
Description:
Translation of DcuS
Type:
translation
Pathway Components:
dcuSR_mRNA -> DcuS
Components:
Function
Name
Type
product
DcuS
protein
reactant
dcuSR_mRNA
RNA
dcuSR_mRNA
YjdH
Name:
dcuSR_mRNA -> YjdH
Description:
Translation of YjdH
Type:
translation
Pathway Components:
dcuSR_mRNA -> YjdH
Components:
Function
Name
Type
product
YjdH
protein
reactant
dcuSR_mRNA
RNA
dcuSR_mRNA
DcuR
Name:
dcuSR_mRNA -> DcuR
Description:
Translation of DcuR
Type:
translation
Pathway Components:
dcuSR_mRNA -> DcuR
Components:
Function
Name
Type
product
DcuR
protein
reactant
dcuSR_mRNA
RNA
ydhYVWXUT_mRNA
YdhY
Name:
ydhYVWXUT_mRNA -> YdhY
Description:
Translation of YdhY
Type:
translation
Pathway Components:
ydhYVWXUT_mRNA -> YdhY
Components:
Function
Name
Type
product
YdhY
protein
reactant
ydhYVWXUT_mRNA
RNA
ydhYVWXUT_mRNA
YdhV
Name:
ydhYVWXUT_mRNA -> YdhV
Description:
Translation of YdhV
Type:
translation
Pathway Components:
ydhYVWXUT_mRNA -> YdhV
Components:
Function
Name
Type
product
YdhV
protein
reactant
ydhYVWXUT_mRNA
RNA
ydhYVWXUT_mRNA
YdhW
Name:
ydhYVWXUT_mRNA -> YdhW
Description:
Translation of YdhW
Type:
translation
Pathway Components:
ydhYVWXUT_mRNA -> YdhW
Components:
Function
Name
Type
product
YdhW
protein
reactant
ydhYVWXUT_mRNA
RNA
ydhYVWXUT_mRNA
YdhX
Name:
ydhYVWXUT_mRNA -> YdhX
Description:
Translation of YdhX
Type:
translation
Pathway Components:
ydhYVWXUT_mRNA -> YdhX
Components:
Function
Name
Type
product
YdhX
protein
reactant
ydhYVWXUT_mRNA
RNA
ydhYVWXUT_mRNA
YdhU
Name:
ydhYVWXUT_mRNA -> YdhU
Description:
Translation of YdhU
Type:
translation
Pathway Components:
ydhYVWXUT_mRNA -> YdhU
Components:
Function
Name
Type
product
YdhU
protein
reactant
ydhYVWXUT_mRNA
RNA
ydhYVWXUT_mRNA
YdhT
Name:
ydhYVWXUT_mRNA -> YdhT
Description:
Translation of YdhT
Type:
translation
Pathway Components:
ydhYVWXUT_mRNA -> YdhT
Components:
Function
Name
Type
product
YdhT
protein
reactant
ydhYVWXUT_mRNA
RNA
ytfE_mRNA
YtfE
Name:
ytfE_mRNA -> YtfE
Description:
Translation of YtfE
Type:
translation
Pathway Components:
ytfE_mRNA -> YtfE
Components:
Function
Name
Type
product
YtfE
protein
reactant
ytfE_mRNA
RNA
yeaR-yoaG_mRNA
YeaR
Name:
yeaR-yoaG_mRNA -> YeaR
Description:
Translation of YeaR
Type:
translation
Pathway Components:
yeaR-yoaG_mRNA -> YeaR
Components:
Function
Name
Type
product
YeaR
protein
reactant
yeaR-yoaG_mRNA
RNA
yeaR-yoaG_mRNA
YoaG
Name:
yeaR-yoaG_mRNA -> YoaG
Description:
Translation of YoaG
Type:
translation
Pathway Components:
yeaR-yoaG_mRNA -> YoaG
Components:
Function
Name
Type
product
YoaG
protein
reactant
yeaR-yoaG_mRNA
RNA
narK_mRNA
NarK
Name:
narK_mRNA -> NarK
Description:
Translation of NarK
Type:
translation
Pathway Components:
narK_mRNA -> NarK
Components:
Function
Name
Type
product
NarK
protein
reactant
narK_mRNA
RNA
NarK
NirC
nitrite_Ext
nitrite
Name:
nitrite_Ext -> nitrite
Description:
Transport of nitrite_Ext through a bacterial membrane, leading to the presence of nitrite inside the cell.
Type:
transport
Pathway Components:
nitrite_Ext - NarK - NirC -> nitrite
Components:
Function
Name
Type
catalyzer
NarK
protein
catalyzer
NirC
protein
product
nitrite
simple_molecule
reactant
nitrite_Ext
simple_molecule
NarK
nitrite_Ext + nitrate_Ext
nitrite + nitrate
Name:
nitrite_Ext + nitrate_Ext -> nitrite + nitrate
Description:
Transport of nitrite_Ext, nitrate_Ext through a bacterial membrane, leading to the presence of nitrite, nitrate inside the cell.
Type:
transport
Pathway Components:
nitrite_Ext + nitrate_Ext - NarK -> nitrite + nitrate
Components:
Function
Name
Type
catalyzer
NarK
protein
product
nitrate
simple_molecule
reactant
nitrate_Ext
simple_molecule
product
nitrite
simple_molecule
reactant
nitrite_Ext
simple_molecule
citCDEFXG_mRNA
CitC
Name:
citCDEFXG_mRNA -> CitC
Description:
Translation of CitC
Type:
translation
Pathway Components:
citCDEFXG_mRNA -> CitC
Components:
Function
Name
Type
product
CitC
protein
reactant
citCDEFXG_mRNA
RNA
CitC
Reactants
citrate lyase + diphosphate
Name:
[a holo citrate lyase acyl-carrier protein] + acetate -> citrate lyase + diphosphate
Description:
Reaction transforming [a holo citrate lyase acyl-carrier protein], acetate into citrate lyase, diphosphate
Type:
state transition
Pathway Components:
[a holo citrate lyase acyl-carrier protein] + acetate - CitC -> citrate lyase + diphosphate
Components:
Function
Name
Type
catalyzer
CitC
protein
reactant
[a holo citrate lyase acyl-carrier protein]
simple_molecule
reactant
acetate
simple_molecule
product
citrate lyase
simple_molecule
product
diphosphate
simple_molecule
citCDEFXG_mRNA
CitD
Name:
citCDEFXG_mRNA -> CitD
Description:
Translation of CitD
Type:
translation
Pathway Components:
citCDEFXG_mRNA -> CitD
Components:
Function
Name
Type
product
CitD
protein
reactant
citCDEFXG_mRNA
RNA
CitE + CitF + CitD
CitD-CitF-CitE
Name:
CitE + CitF + CitD -> CitD-CitF-CitE
Description:
Reaction transforming CitE, CitF, CitD into CitD-CitF-CitE
Type:
state transition
Pathway Components:
CitE + CitF + CitD -> CitD-CitF-CitE
Components:
Function
Name
Type
reactant
CitD
protein
product
CitD-CitF-CitE
complex
reactant
CitE
protein
reactant
CitF
protein
citCDEFXG_mRNA
CitE
Name:
citCDEFXG_mRNA -> CitE
Description:
Translation of CitE
Type:
translation
Pathway Components:
citCDEFXG_mRNA -> CitE
Components:
Function
Name
Type
product
CitE
protein
reactant
citCDEFXG_mRNA
RNA
citCDEFXG_mRNA
CitF
Name:
citCDEFXG_mRNA -> CitF
Description:
Translation of CitF
Type:
translation
Pathway Components:
citCDEFXG_mRNA -> CitF
Components:
Function
Name
Type
product
CitF
protein
reactant
citCDEFXG_mRNA
RNA
citCDEFXG_mRNA
CitX
Name:
citCDEFXG_mRNA -> CitX
Description:
Translation of CitX
Type:
translation
Pathway Components:
citCDEFXG_mRNA -> CitX
Components:
Function
Name
Type
product
CitX
protein
reactant
citCDEFXG_mRNA
RNA
CitX
Reactants
Products
Name:
[a citrate-lyase acyl-carrier protein] + 2-5-triphosphoribosyl-3-dephospho-CoA -> [a holo citrate lyase acyl-carrier protein] + diphosphate
Description:
Reaction transforming [a citrate-lyase acyl-carrier protein], 2-5-triphosphoribosyl-3-dephospho-CoA into [a holo citrate lyase acyl-carrier protein], diphosphate
Type:
state transition
Pathway Components:
[a citrate-lyase acyl-carrier protein] + 2-5-triphosphoribosyl-3-dephospho-CoA - CitX -> [a holo citrate lyase acyl-carrier protein] + diphosphate
Components:
Function
Name
Type
reactant
2-5-triphosphoribosyl-3-dephospho-CoA
simple_molecule
catalyzer
CitX
protein
reactant
[a citrate-lyase acyl-carrier protein]
simple_molecule
product
[a holo citrate lyase acyl-carrier protein]
simple_molecule
product
diphosphate
simple_molecule
citCDEFXG_mRNA
CitG
Name:
citCDEFXG_mRNA -> CitG
Description:
Translation of CitG
Type:
translation
Pathway Components:
citCDEFXG_mRNA -> CitG
Components:
Function
Name
Type
product
CitG
protein
reactant
citCDEFXG_mRNA
RNA
CitG
3-dephospho-CoA
2-5-triphosphoribosyl-3-dephospho-CoA + adenine
Name:
3-dephospho-CoA -> 2-5-triphosphoribosyl-3-dephospho-CoA + adenine
Description:
Reaction transforming 3-dephospho-CoA into 2-5-triphosphoribosyl-3-dephospho-CoA, adenine
Type:
state transition
Pathway Components:
3-dephospho-CoA - CitG -> 2-5-triphosphoribosyl-3-dephospho-CoA + adenine
Components:
Function
Name
Type
product
2-5-triphosphoribosyl-3-dephospho-CoA
simple_molecule
reactant
3-dephospho-CoA
simple_molecule
catalyzer
CitG
protein
product
adenine
simple_molecule
nirBDC-cysG_mRNA
NirB
Name:
nirBDC-cysG_mRNA -> NirB
Description:
Translation of NirB
Type:
translation
Pathway Components:
nirBDC-cysG_mRNA -> NirB
Components:
Function
Name
Type
product
NirB
protein
reactant
nirBDC-cysG_mRNA
RNA
NirB + NirD
NirD-NirB
Name:
NirB + NirD -> NirD-NirB
Description:
Reaction transforming NirB, NirD into NirD-NirB
Type:
state transition
Pathway Components:
NirB + NirD -> NirD-NirB
Components:
Function
Name
Type
reactant
NirB
protein
reactant
NirD
protein
product
NirD-NirB
complex
NirD-NirB
nitrite
ammonium
Name:
nitrite -> ammonium
Description:
Reaction transforming nitrite into ammonium
Type:
state transition
Pathway Components:
nitrite - NirD-NirB -> ammonium
Components:
Function
Name
Type
catalyzer
NirD-NirB
complex
product
ammonium
simple_molecule
reactant
nitrite
simple_molecule
nirBDC-cysG_mRNA
NirD
Name:
nirBDC-cysG_mRNA -> NirD
Description:
Translation of NirD
Type:
translation
Pathway Components:
nirBDC-cysG_mRNA -> NirD
Components:
Function
Name
Type
product
NirD
protein
reactant
nirBDC-cysG_mRNA
RNA
nirBDC-cysG_mRNA
NirC
Name:
nirBDC-cysG_mRNA -> NirC
Description:
Translation of NirC
Type:
translation
Pathway Components:
nirBDC-cysG_mRNA -> NirC
Components:
Function
Name
Type
product
NirC
protein
reactant
nirBDC-cysG_mRNA
RNA
nirBDC-cysG_mRNA
CysG
Name:
nirBDC-cysG_mRNA -> CysG
Description:
Translation of CysG
Type:
translation
Pathway Components:
nirBDC-cysG_mRNA -> CysG
Components:
Function
Name
Type
product
CysG
protein
reactant
nirBDC-cysG_mRNA
RNA
CysG
uroporphyrinogen-III + SAM
adenosylhomocysteine + precorrin-2
Name:
uroporphyrinogen-III + SAM -> adenosylhomocysteine + precorrin-2
Description:
Reaction transforming uroporphyrinogen-III, SAM into adenosylhomocysteine, precorrin-2
Type:
state transition
Pathway Components:
uroporphyrinogen-III + SAM - CysG -> adenosylhomocysteine + precorrin-2
Components:
Function
Name
Type
catalyzer
CysG
protein
reactant
SAM
simple_molecule
product
adenosylhomocysteine
simple_molecule
product
precorrin-2
simple_molecule
reactant
uroporphyrinogen-III
simple_molecule
CysG
precorrin-1 + SAM
adenosylhomocysteine + precorrin-2
Name:
precorrin-1 + SAM -> adenosylhomocysteine + precorrin-2
Description:
Reaction transforming precorrin-1, SAM into adenosylhomocysteine, precorrin-2
Type:
state transition
Pathway Components:
precorrin-1 + SAM - CysG -> adenosylhomocysteine + precorrin-2
Components:
Function
Name
Type
catalyzer
CysG
protein
reactant
SAM
simple_molecule
product
adenosylhomocysteine
simple_molecule
reactant
precorrin-1
simple_molecule
product
precorrin-2
simple_molecule
CysG
uroporphyrinogen-III + SAM
adenosylhomocysteine + precorrin-1
Name:
uroporphyrinogen-III + SAM -> adenosylhomocysteine + precorrin-1
Description:
Reaction transforming uroporphyrinogen-III, SAM into adenosylhomocysteine, precorrin-1
Type:
state transition
Pathway Components:
uroporphyrinogen-III + SAM - CysG -> adenosylhomocysteine + precorrin-1
Components:
Function
Name
Type
catalyzer
CysG
protein
reactant
SAM
simple_molecule
product
adenosylhomocysteine
simple_molecule
product
precorrin-1
simple_molecule
reactant
uroporphyrinogen-III
simple_molecule
CysG
precorrin-2
Precorrin
Name:
precorrin-2 -> Precorrin
Description:
Reaction transforming precorrin-2 into Precorrin
Type:
state transition
Pathway Components:
precorrin-2 - CysG -> Precorrin
Components:
Function
Name
Type
catalyzer
CysG
protein
product
Precorrin
simple_molecule
reactant
precorrin-2
simple_molecule
CysG
Precorrin + Fe+2
siroheme
Name:
Precorrin + Fe+2 -> siroheme
Description:
Reaction transforming Precorrin, Fe+2 into siroheme
Type:
state transition
Pathway Components:
Precorrin + Fe+2 - CysG -> siroheme
Components:
Function
Name
Type
catalyzer
CysG
protein
reactant
Fe+2
simple_molecule
reactant
Precorrin
simple_molecule
product
siroheme
simple_molecule
adhE_mRNA
AdhE
Name:
adhE_mRNA -> AdhE
Description:
Translation of AdhE
Type:
translation
Pathway Components:
adhE_mRNA -> AdhE
Components:
Function
Name
Type
product
AdhE
protein
reactant
adhE_mRNA
RNA
AdhE
pyruvate
pyruvate formate lyase, active form
pyruvate formate-lyase
Name:
pyruvate formate lyase, active form -> pyruvate formate-lyase
Description:
Reaction transforming pyruvate formate lyase, active form into pyruvate formate-lyase
Type:
state transition
Pathway Components:
pyruvate formate lyase, active form - AdhE - pyruvate -> pyruvate formate-lyase
Components:
Function
Name
Type
catalyzer
AdhE
protein
inhibitor
pyruvate
simple_molecule
reactant
pyruvate formate lyase, active form
simple_molecule
product
pyruvate formate-lyase
simple_molecule
AdhE
1-Alcohol
RCHO
Name:
1-Alcohol -> RCHO
Description:
Reaction transforming 1-Alcohol into RCHO
Type:
state transition
Pathway Components:
1-Alcohol - AdhE -> RCHO
Components:
Function
Name
Type
reactant
1-Alcohol
simple_molecule
catalyzer
AdhE
protein
product
RCHO
simple_molecule
AdhE
EtOH
ethanal
Name:
EtOH -> ethanal
Description:
Reaction transforming EtOH into ethanal
Type:
state transition
Pathway Components:
EtOH - AdhE -> ethanal
Components:
Function
Name
Type
catalyzer
AdhE
protein
reactant
EtOH
simple_molecule
product
ethanal
simple_molecule
AdhE
coenzyme A + ethanal
acetyl-CoA
Name:
coenzyme A + ethanal -> acetyl-CoA
Description:
Reaction transforming coenzyme A, ethanal into acetyl-CoA
Type:
state transition
Pathway Components:
coenzyme A + ethanal - AdhE -> acetyl-CoA
Components:
Function
Name
Type
catalyzer
AdhE
protein
product
acetyl-CoA
simple_molecule
reactant
coenzyme A
simple_molecule
reactant
ethanal
simple_molecule
fdhF_mRNA
FdhF
Name:
fdhF_mRNA -> FdhF
Description:
Translation of FdhF
Type:
translation
Pathway Components:
fdhF_mRNA -> FdhF
Components:
Function
Name
Type
product
FdhF
protein
reactant
fdhF_mRNA
RNA
HycG + FdhF + HycF + HycD + HycE + HycC + HycB
FdhF-HycE-HycB-HycG-HycF-HycC-HycD
Name:
HycG + FdhF + HycF + HycD + HycE + HycC + HycB -> FdhF-HycE-HycB-HycG-HycF-HycC-HycD
Description:
Reaction transforming HycG, FdhF, HycF, HycD, HycE, HycC, HycB into FdhF-HycE-HycB-HycG-HycF-HycC-HycD
Type:
state transition
Pathway Components:
HycG + FdhF + HycF + HycD + HycE + HycC + HycB -> FdhF-HycE-HycB-HycG-HycF-HycC-HycD
Components:
Function
Name
Type
reactant
FdhF
protein
product
FdhF-HycE-HycB-HycG-HycF-HycC-HycD
complex
reactant
HycB
protein
reactant
HycC
protein
reactant
HycD
protein
reactant
HycE
protein
reactant
HycF
protein
reactant
HycG
protein
FdhF-HycE-HycB-HycG-HycF-HycC-HycD
formate
hydrogen + CO2
Name:
formate -> hydrogen + CO2
Description:
Reaction transforming formate into hydrogen, CO2
Type:
state transition
Pathway Components:
formate - FdhF-HycE-HycB-HycG-HycF-HycC-HycD -> hydrogen + CO2
Components:
Function
Name
Type
product
CO2
simple_molecule
catalyzer
FdhF-HycE-HycB-HycG-HycF-HycC-HycD
complex
reactant
formate
simple_molecule
product
hydrogen
simple_molecule
FdhF
oxidized hydrogenase 3 + formate
reduced hydrogenase 3 + CO2
Name:
oxidized hydrogenase 3 + formate -> reduced hydrogenase 3 + CO2
Description:
Reaction transforming oxidized hydrogenase 3, formate into reduced hydrogenase 3, CO2
Type:
state transition
Pathway Components:
oxidized hydrogenase 3 + formate - FdhF -> reduced hydrogenase 3 + CO2
Components:
Function
Name
Type
product
CO2
simple_molecule
catalyzer
FdhF
protein
reactant
formate
simple_molecule
reactant
oxidized hydrogenase 3
simple_molecule
product
reduced hydrogenase 3
simple_molecule
FdhF
nitrate
nitrite
acceptors + formate
A(H2) + CO2
Name:
acceptors + formate -> A(H2) + CO2
Description:
Reaction transforming acceptors, formate into A(H2), CO2
Type:
state transition
Pathway Components:
acceptors + formate - FdhF - nitrate - nitrite -> A(H2) + CO2
Components:
Function
Name
Type
product
A(H2)
simple_molecule
product
CO2
simple_molecule
catalyzer
FdhF
protein
reactant
acceptors
simple_molecule
reactant
formate
simple_molecule
inhibitor
nitrate
simple_molecule
inhibitor
nitrite
simple_molecule
fdnGHI_mRNA
FdnG
Name:
fdnGHI_mRNA -> FdnG
Description:
Translation of FdnG
Type:
translation
Pathway Components:
fdnGHI_mRNA -> FdnG
Components:
Function
Name
Type
product
FdnG
protein
reactant
fdnGHI_mRNA
RNA
FdnG + FdnH + FdnI
FdnI-FdnH-FdnG
Name:
FdnG + FdnH + FdnI -> FdnI-FdnH-FdnG
Description:
Reaction transforming FdnG, FdnH, FdnI into FdnI-FdnH-FdnG
Type:
state transition
Pathway Components:
FdnG + FdnH + FdnI -> FdnI-FdnH-FdnG
Components:
Function
Name
Type
reactant
FdnG
protein
reactant
FdnH
protein
reactant
FdnI
protein
product
FdnI-FdnH-FdnG
complex
fdnGHI_mRNA
FdnH
Name:
fdnGHI_mRNA -> FdnH
Description:
Translation of FdnH
Type:
translation
Pathway Components:
fdnGHI_mRNA -> FdnH
Components:
Function
Name
Type
product
FdnH
protein
reactant
fdnGHI_mRNA
RNA
fdnGHI_mRNA
FdnI
Name:
fdnGHI_mRNA -> FdnI
Description:
Translation of FdnI
Type:
translation
Pathway Components:
fdnGHI_mRNA -> FdnI
Components:
Function
Name
Type
product
FdnI
protein
reactant
fdnGHI_mRNA
RNA
ynfEFGH-dmsD_mRNA
YnfE
Name:
ynfEFGH-dmsD_mRNA -> YnfE
Description:
Translation of YnfE
Type:
translation
Pathway Components:
ynfEFGH-dmsD_mRNA -> YnfE
Components:
Function
Name
Type
product
YnfE
protein
reactant
ynfEFGH-dmsD_mRNA
RNA
YnfE + YnfF + YnfG + YnfH
YnfE-YnfF-YnfG-YnfH
Name:
YnfE + YnfF + YnfG + YnfH -> YnfE-YnfF-YnfG-YnfH
Description:
Reaction transforming YnfE, YnfF, YnfG, YnfH into YnfE-YnfF-YnfG-YnfH
Type:
state transition
Pathway Components:
YnfE + YnfF + YnfG + YnfH -> YnfE-YnfF-YnfG-YnfH
Components:
Function
Name
Type
reactant
YnfE
protein
product
YnfE-YnfF-YnfG-YnfH
complex
reactant
YnfF
protein
reactant
YnfG
protein
reactant
YnfH
protein
YnfE-YnfF-YnfG-YnfH
selenate + A(H2)
acceptors + selenite
Name:
selenate + A(H2) -> acceptors + selenite
Description:
Reaction transforming selenate, A(H2) into acceptors, selenite
Type:
state transition
Pathway Components:
selenate + A(H2) - YnfE-YnfF-YnfG-YnfH -> acceptors + selenite
Components:
Function
Name
Type
reactant
A(H2)
simple_molecule
catalyzer
YnfE-YnfF-YnfG-YnfH
complex
product
acceptors
simple_molecule
reactant
selenate
simple_molecule
product
selenite
simple_molecule
ynfEFGH-dmsD_mRNA
YnfF
Name:
ynfEFGH-dmsD_mRNA -> YnfF
Description:
Translation of YnfF
Type:
translation
Pathway Components:
ynfEFGH-dmsD_mRNA -> YnfF
Components:
Function
Name
Type
product
YnfF
protein
reactant
ynfEFGH-dmsD_mRNA
RNA
ynfEFGH-dmsD_mRNA
YnfG
Name:
ynfEFGH-dmsD_mRNA -> YnfG
Description:
Translation of YnfG
Type:
translation
Pathway Components:
ynfEFGH-dmsD_mRNA -> YnfG
Components:
Function
Name
Type
product
YnfG
protein
reactant
ynfEFGH-dmsD_mRNA
RNA
ynfEFGH-dmsD_mRNA
YnfH
Name:
ynfEFGH-dmsD_mRNA -> YnfH
Description:
Translation of YnfH
Type:
translation
Pathway Components:
ynfEFGH-dmsD_mRNA -> YnfH
Components:
Function
Name
Type
product
YnfH
protein
reactant
ynfEFGH-dmsD_mRNA
RNA
ynfEFGH-dmsD_mRNA
DmsD
Name:
ynfEFGH-dmsD_mRNA -> DmsD
Description:
Translation of DmsD
Type:
translation
Pathway Components:
ynfEFGH-dmsD_mRNA -> DmsD
Components:
Function
Name
Type
product
DmsD
protein
reactant
ynfEFGH-dmsD_mRNA
RNA
caiF_mRNA
CaiF
Name:
caiF_mRNA -> CaiF
Description:
Translation of CaiF
Type:
translation
Pathway Components:
caiF_mRNA -> CaiF
Components:
Function
Name
Type
product
CaiF
protein
reactant
caiF_mRNA
RNA
napFDAGHBC-ccmABCDEFGH_mRNA
NapF
Name:
napFDAGHBC-ccmABCDEFGH_mRNA -> NapF
Description:
Translation of NapF
Type:
translation
Pathway Components:
napFDAGHBC-ccmABCDEFGH_mRNA -> NapF
Components:
Function
Name
Type
product
NapF
protein
reactant
napFDAGHBC-ccmABCDEFGH_mRNA
RNA
napFDAGHBC-ccmABCDEFGH_mRNA
NapD
Name:
napFDAGHBC-ccmABCDEFGH_mRNA -> NapD
Description:
Translation of NapD
Type:
translation
Pathway Components:
napFDAGHBC-ccmABCDEFGH_mRNA -> NapD
Components:
Function
Name
Type
product
NapD
protein
reactant
napFDAGHBC-ccmABCDEFGH_mRNA
RNA
napFDAGHBC-ccmABCDEFGH_mRNA
NapA
Name:
napFDAGHBC-ccmABCDEFGH_mRNA -> NapA
Description:
Translation of NapA
Type:
translation
Pathway Components:
napFDAGHBC-ccmABCDEFGH_mRNA -> NapA
Components:
Function
Name
Type
product
NapA
protein
reactant
napFDAGHBC-ccmABCDEFGH_mRNA
RNA
NapB + NapA
NapB-NapA
Name:
NapB + NapA -> NapB-NapA
Description:
Reaction transforming NapB, NapA into NapB-NapA
Type:
state transition
Pathway Components:
NapB + NapA -> NapB-NapA
Components:
Function
Name
Type
reactant
NapA
protein
reactant
NapB
protein
product
NapB-NapA
complex
NapB-NapA
Reduced-NapC-proteins + nitrate
Oxidized-NapC-proteins + nitrite
Name:
Reduced-NapC-proteins + nitrate -> Oxidized-NapC-proteins + nitrite
Description:
Reaction transforming Reduced-NapC-proteins, nitrate into Oxidized-NapC-proteins, nitrite
Type:
state transition
Pathway Components:
Reduced-NapC-proteins + nitrate - NapB-NapA -> Oxidized-NapC-proteins + nitrite
Components:
Function
Name
Type
catalyzer
NapB-NapA
complex
product
Oxidized-NapC-proteins
simple_molecule
reactant
Reduced-NapC-proteins
simple_molecule
reactant
nitrate
simple_molecule
product
nitrite
simple_molecule
napFDAGHBC-ccmABCDEFGH_mRNA
NapG
Name:
napFDAGHBC-ccmABCDEFGH_mRNA -> NapG
Description:
Translation of NapG
Type:
translation
Pathway Components:
napFDAGHBC-ccmABCDEFGH_mRNA -> NapG
Components:
Function
Name
Type
product
NapG
protein
reactant
napFDAGHBC-ccmABCDEFGH_mRNA
RNA
NapG + NapH
NapG-NapH
Name:
NapG + NapH -> NapG-NapH
Description:
Reaction transforming NapG, NapH into NapG-NapH
Type:
state transition
Pathway Components:
NapG + NapH -> NapG-NapH
Components:
Function
Name
Type
reactant
NapG
protein
product
NapG-NapH
complex
reactant
NapH
protein
NapG-NapH
Oxidized-NapC-proteins + ubiquinol
Reduced-NapC-proteins + ubiquinone
Name:
Oxidized-NapC-proteins + ubiquinol -> Reduced-NapC-proteins + ubiquinone
Description:
Reaction transforming Oxidized-NapC-proteins, ubiquinol into Reduced-NapC-proteins, ubiquinone
Type:
state transition
Pathway Components:
Oxidized-NapC-proteins + ubiquinol - NapG-NapH -> Reduced-NapC-proteins + ubiquinone
Components:
Function
Name
Type
catalyzer
NapG-NapH
complex
reactant
Oxidized-NapC-proteins
simple_molecule
product
Reduced-NapC-proteins
simple_molecule
reactant
ubiquinol
simple_molecule
product
ubiquinone
simple_molecule
napFDAGHBC-ccmABCDEFGH_mRNA
NapH
Name:
napFDAGHBC-ccmABCDEFGH_mRNA -> NapH
Description:
Translation of NapH
Type:
translation
Pathway Components:
napFDAGHBC-ccmABCDEFGH_mRNA -> NapH
Components:
Function
Name
Type
product
NapH
protein
reactant
napFDAGHBC-ccmABCDEFGH_mRNA
RNA
napFDAGHBC-ccmABCDEFGH_mRNA
NapB
Name:
napFDAGHBC-ccmABCDEFGH_mRNA -> NapB
Description:
Translation of NapB
Type:
translation
Pathway Components:
napFDAGHBC-ccmABCDEFGH_mRNA -> NapB
Components:
Function
Name
Type
product
NapB
protein
reactant
napFDAGHBC-ccmABCDEFGH_mRNA
RNA
napFDAGHBC-ccmABCDEFGH_mRNA
NapC
Name:
napFDAGHBC-ccmABCDEFGH_mRNA -> NapC
Description:
Translation of NapC
Type:
translation
Pathway Components:
napFDAGHBC-ccmABCDEFGH_mRNA -> NapC
Components:
Function
Name
Type
product
NapC
protein
reactant
napFDAGHBC-ccmABCDEFGH_mRNA
RNA
NapC
ferri c-type cytochrome + menaquinol
reduced Cytochrome C protein + vitamin K2
Name:
ferri c-type cytochrome + menaquinol -> reduced Cytochrome C protein + vitamin K2
Description:
Reaction transforming ferri c-type cytochrome, menaquinol into reduced Cytochrome C protein, vitamin K2
Type:
state transition
Pathway Components:
ferri c-type cytochrome + menaquinol - NapC -> reduced Cytochrome C protein + vitamin K2
Components:
Function
Name
Type
catalyzer
NapC
protein
reactant
ferri c-type cytochrome
simple_molecule
reactant
menaquinol
simple_molecule
product
reduced Cytochrome C protein
simple_molecule
product
vitamin K2
simple_molecule
napFDAGHBC-ccmABCDEFGH_mRNA
CcmA
Name:
napFDAGHBC-ccmABCDEFGH_mRNA -> CcmA
Description:
Translation of CcmA
Type:
translation
Pathway Components:
napFDAGHBC-ccmABCDEFGH_mRNA -> CcmA
Components:
Function
Name
Type
product
CcmA
protein
reactant
napFDAGHBC-ccmABCDEFGH_mRNA
RNA
CcmB + CcmE + CcmA + CcmC + CcmD
CcmD-CcmB-CcmA-CcmE-CcmC
Name:
CcmB + CcmE + CcmA + CcmC + CcmD -> CcmD-CcmB-CcmA-CcmE-CcmC
Description:
Reaction transforming CcmB, CcmE, CcmA, CcmC, CcmD into CcmD-CcmB-CcmA-CcmE-CcmC
Type:
state transition
Pathway Components:
CcmB + CcmE + CcmA + CcmC + CcmD -> CcmD-CcmB-CcmA-CcmE-CcmC
Components:
Function
Name
Type
reactant
CcmA
protein
reactant
CcmB
protein
reactant
CcmC
protein
reactant
CcmD
protein
product
CcmD-CcmB-CcmA-CcmE-CcmC
complex
reactant
CcmE
protein
CcmD-CcmB-CcmA-CcmE-CcmC
protoheme IX_Ext
protoheme IX
Name:
protoheme IX_Ext -> protoheme IX
Description:
Transport of protoheme IX_Ext through a bacterial membrane, leading to the presence of protoheme IX inside the cell.
Type:
transport
Pathway Components:
protoheme IX_Ext - CcmD-CcmB-CcmA-CcmE-CcmC -> protoheme IX
Components:
Function
Name
Type
catalyzer
CcmD-CcmB-CcmA-CcmE-CcmC
complex
product
protoheme IX
simple_molecule
reactant
protoheme IX_Ext
simple_molecule
napFDAGHBC-ccmABCDEFGH_mRNA
CcmB
Name:
napFDAGHBC-ccmABCDEFGH_mRNA -> CcmB
Description:
Translation of CcmB
Type:
translation
Pathway Components:
napFDAGHBC-ccmABCDEFGH_mRNA -> CcmB
Components:
Function
Name
Type
product
CcmB
protein
reactant
napFDAGHBC-ccmABCDEFGH_mRNA
RNA
napFDAGHBC-ccmABCDEFGH_mRNA
CcmC
Name:
napFDAGHBC-ccmABCDEFGH_mRNA -> CcmC
Description:
Translation of CcmC
Type:
translation
Pathway Components:
napFDAGHBC-ccmABCDEFGH_mRNA -> CcmC
Components:
Function
Name
Type
product
CcmC
protein
reactant
napFDAGHBC-ccmABCDEFGH_mRNA
RNA
napFDAGHBC-ccmABCDEFGH_mRNA
CcmD
Name:
napFDAGHBC-ccmABCDEFGH_mRNA -> CcmD
Description:
Translation of CcmD
Type:
translation
Pathway Components:
napFDAGHBC-ccmABCDEFGH_mRNA -> CcmD
Components:
Function
Name
Type
product
CcmD
protein
reactant
napFDAGHBC-ccmABCDEFGH_mRNA
RNA
napFDAGHBC-ccmABCDEFGH_mRNA
CcmE
Name:
napFDAGHBC-ccmABCDEFGH_mRNA -> CcmE
Description:
Translation of CcmE
Type:
translation
Pathway Components:
napFDAGHBC-ccmABCDEFGH_mRNA -> CcmE
Components:
Function
Name
Type
product
CcmE
protein
reactant
napFDAGHBC-ccmABCDEFGH_mRNA
RNA
CcmG + CcmF + CcmE + CcmH
CcmE-CcmF-CcmG-CcmH
Name:
CcmG + CcmF + CcmE + CcmH -> CcmE-CcmF-CcmG-CcmH
Description:
Reaction transforming CcmG, CcmF, CcmE, CcmH into CcmE-CcmF-CcmG-CcmH
Type:
state transition
Pathway Components:
CcmG + CcmF + CcmE + CcmH -> CcmE-CcmF-CcmG-CcmH
Components:
Function
Name
Type
reactant
CcmE
protein
product
CcmE-CcmF-CcmG-CcmH
complex
reactant
CcmF
protein
reactant
CcmG
protein
reactant
CcmH
protein
napFDAGHBC-ccmABCDEFGH_mRNA
CcmF
Name:
napFDAGHBC-ccmABCDEFGH_mRNA -> CcmF
Description:
Translation of CcmF
Type:
translation
Pathway Components:
napFDAGHBC-ccmABCDEFGH_mRNA -> CcmF
Components:
Function
Name
Type
product
CcmF
protein
reactant
napFDAGHBC-ccmABCDEFGH_mRNA
RNA
napFDAGHBC-ccmABCDEFGH_mRNA
CcmG
Name:
napFDAGHBC-ccmABCDEFGH_mRNA -> CcmG
Description:
Translation of CcmG
Type:
translation
Pathway Components:
napFDAGHBC-ccmABCDEFGH_mRNA -> CcmG
Components:
Function
Name
Type
product
CcmG
protein
reactant
napFDAGHBC-ccmABCDEFGH_mRNA
RNA
napFDAGHBC-ccmABCDEFGH_mRNA
CcmH
Name:
napFDAGHBC-ccmABCDEFGH_mRNA -> CcmH
Description:
Translation of CcmH
Type:
translation
Pathway Components:
napFDAGHBC-ccmABCDEFGH_mRNA -> CcmH
Components:
Function
Name
Type
product
CcmH
protein
reactant
napFDAGHBC-ccmABCDEFGH_mRNA
RNA
aspA_mRNA
AspA
Name:
aspA_mRNA -> AspA
Description:
Translation of AspA
Type:
translation
Pathway Components:
aspA_mRNA -> AspA
Components:
Function
Name
Type
product
AspA
protein
reactant
aspA_mRNA
RNA
dpiBA_mRNA
DpiB
Name:
dpiBA_mRNA -> DpiB
Description:
Translation of DpiB
Type:
translation
Pathway Components:
dpiBA_mRNA -> DpiB
Components:
Function
Name
Type
product
DpiB
protein
reactant
dpiBA_mRNA
RNA
dpiBA_mRNA
DpiA
Name:
dpiBA_mRNA -> DpiA
Description:
Translation of DpiA
Type:
translation
Pathway Components:
dpiBA_mRNA -> DpiA
Components:
Function
Name
Type
product
DpiA
protein
reactant
dpiBA_mRNA
RNA
dmsABC_mRNA
DmsA
Name:
dmsABC_mRNA -> DmsA
Description:
Translation of DmsA
Type:
translation
Pathway Components:
dmsABC_mRNA -> DmsA
Components:
Function
Name
Type
product
DmsA
protein
reactant
dmsABC_mRNA
RNA
DmsB + DmsC + DmsA
DmsA-DmsB-DmsC
Name:
DmsB + DmsC + DmsA -> DmsA-DmsB-DmsC
Description:
Reaction transforming DmsB, DmsC, DmsA into DmsA-DmsB-DmsC
Type:
state transition
Pathway Components:
DmsB + DmsC + DmsA -> DmsA-DmsB-DmsC
Components:
Function
Name
Type
reactant
DmsA
protein
product
DmsA-DmsB-DmsC
complex
reactant
DmsB
protein
reactant
DmsC
protein
DmsA-DmsB-DmsC
Fe+2
menaquinol + DMSO
dimethylsulfide + vitamin K2
Name:
menaquinol + DMSO -> dimethylsulfide + vitamin K2
Description:
Reaction transforming menaquinol, DMSO into dimethylsulfide, vitamin K2
Type:
state transition
Pathway Components:
menaquinol + DMSO - DmsA-DmsB-DmsC - Fe+2 -> dimethylsulfide + vitamin K2
Components:
Function
Name
Type
reactant
DMSO
simple_molecule
catalyzer
DmsA-DmsB-DmsC
complex
inhibitor
Fe+2
simple_molecule
product
dimethylsulfide
simple_molecule
reactant
menaquinol
simple_molecule
product
vitamin K2
simple_molecule
dmsABC_mRNA
DmsB
Name:
dmsABC_mRNA -> DmsB
Description:
Translation of DmsB
Type:
translation
Pathway Components:
dmsABC_mRNA -> DmsB
Components:
Function
Name
Type
product
DmsB
protein
reactant
dmsABC_mRNA
RNA
dmsABC_mRNA
DmsC
Name:
dmsABC_mRNA -> DmsC
Description:
Translation of DmsC
Type:
translation
Pathway Components:
dmsABC_mRNA -> DmsC
Components:
Function
Name
Type
product
DmsC
protein
reactant
dmsABC_mRNA
RNA
moeAB_mRNA
MoeA
Name:
moeAB_mRNA -> MoeA
Description:
Translation of MoeA
Type:
translation
Pathway Components:
moeAB_mRNA -> MoeA
Components:
Function
Name
Type
product
MoeA
protein
reactant
moeAB_mRNA
RNA
MoeA
H2Dtpp-mADP + molybdate
MoCo (dioxyo)
Name:
H2Dtpp-mADP + molybdate -> MoCo (dioxyo)
Description:
Reaction transforming H2Dtpp-mADP, molybdate into MoCo (dioxyo)
Type:
state transition
Pathway Components:
H2Dtpp-mADP + molybdate - MoeA -> MoCo (dioxyo)
Components:
Function
Name
Type
reactant
H2Dtpp-mADP
simple_molecule
product
MoCo (dioxyo)
simple_molecule
catalyzer
MoeA
protein
reactant
molybdate
simple_molecule
moeAB_mRNA
MoeB
Name:
moeAB_mRNA -> MoeB
Description:
Translation of MoeB
Type:
translation
Pathway Components:
moeAB_mRNA -> MoeB
Components:
Function
Name
Type
product
MoeB
protein
reactant
moeAB_mRNA
RNA
MoeB
MPT-Synthase-small-subunits
Products
Name:
MPT-Synthase-small-subunits -> carboxy-adenylated small subunit of molybdopterin synthase + diphosphate
Description:
Reaction transforming MPT-Synthase-small-subunits into carboxy-adenylated small subunit of molybdopterin synthase, diphosphate
Type:
state transition
Pathway Components:
MPT-Synthase-small-subunits - MoeB -> carboxy-adenylated small subunit of molybdopterin synthase + diphosphate
Components:
Function
Name
Type
reactant
MPT-Synthase-small-subunits
simple_molecule
catalyzer
MoeB
protein
product
carboxy-adenylated small subunit of molybdopterin synthase
simple_molecule
product
diphosphate
simple_molecule
hcp-hcr-poxB_mRNA
Hcp
Name:
hcp-hcr-poxB_mRNA -> Hcp
Description:
Translation of Hcp
Type:
translation
Pathway Components:
hcp-hcr-poxB_mRNA -> Hcp
Components:
Function
Name
Type
product
Hcp
protein
reactant
hcp-hcr-poxB_mRNA
RNA
Hcp
A(H2) + NH2OH
acceptors + ammonium
Name:
A(H2) + NH2OH -> acceptors + ammonium
Description:
Reaction transforming A(H2), NH2OH into acceptors, ammonium
Type:
state transition
Pathway Components:
A(H2) + NH2OH - Hcp -> acceptors + ammonium
Components:
Function
Name
Type
reactant
A(H2)
simple_molecule
catalyzer
Hcp
protein
reactant
NH2OH
simple_molecule
product
acceptors
simple_molecule
product
ammonium
simple_molecule
hcp-hcr-poxB_mRNA
Hcr
Name:
hcp-hcr-poxB_mRNA -> Hcr
Description:
Translation of Hcr
Type:
translation
Pathway Components:
hcp-hcr-poxB_mRNA -> Hcr
Components:
Function
Name
Type
product
Hcr
protein
reactant
hcp-hcr-poxB_mRNA
RNA
Hcr
oxidized hybrid-cluster protein
reduced hybrid-cluster protein
Name:
oxidized hybrid-cluster protein -> reduced hybrid-cluster protein
Description:
Reaction transforming oxidized hybrid-cluster protein into reduced hybrid-cluster protein
Type:
state transition
Pathway Components:
oxidized hybrid-cluster protein - Hcr -> reduced hybrid-cluster protein
Components:
Function
Name
Type
catalyzer
Hcr
protein
reactant
oxidized hybrid-cluster protein
simple_molecule
product
reduced hybrid-cluster protein
simple_molecule
hcp-hcr-poxB_mRNA
PoxB
Name:
hcp-hcr-poxB_mRNA -> PoxB
Description:
Translation of PoxB
Type:
translation
Pathway Components:
hcp-hcr-poxB_mRNA -> PoxB
Components:
Function
Name
Type
product
PoxB
protein
reactant
hcp-hcr-poxB_mRNA
RNA
PoxB
ubiquinone + pyruvate
ubiquinol + acetate + CO2
Name:
ubiquinone + pyruvate -> ubiquinol + acetate + CO2
Description:
Reaction transforming ubiquinone, pyruvate into ubiquinol, acetate , CO2
Type:
state transition
Pathway Components:
ubiquinone + pyruvate - PoxB -> ubiquinol + acetate + CO2
Components:
Function
Name
Type
product
CO2
simple_molecule
catalyzer
PoxB
protein
product
acetate
simple_molecule
reactant
pyruvate
simple_molecule
product
ubiquinol
simple_molecule
reactant
ubiquinone
simple_molecule
PoxB
pyruvate + ethanal
acetoin + CO2
Name:
pyruvate + ethanal -> acetoin + CO2
Description:
Reaction transforming pyruvate, ethanal into acetoin, CO2
Type:
state transition
Pathway Components:
pyruvate + ethanal - PoxB -> acetoin + CO2
Components:
Function
Name
Type
product
CO2
simple_molecule
catalyzer
PoxB
protein
product
acetoin
simple_molecule
reactant
ethanal
simple_molecule
reactant
pyruvate
simple_molecule
hyaABCDEF_mRNA
HyaA
Name:
hyaABCDEF_mRNA -> HyaA
Description:
Translation of HyaA
Type:
translation
Pathway Components:
hyaABCDEF_mRNA -> HyaA
Components:
Function
Name
Type
product
HyaA
protein
reactant
hyaABCDEF_mRNA
RNA
HyaC + HyaA + HyaB
HyaA-HyaB-HyaC
Name:
HyaC + HyaA + HyaB -> HyaA-HyaB-HyaC
Description:
Reaction transforming HyaC, HyaA, HyaB into HyaA-HyaB-HyaC
Type:
state transition
Pathway Components:
HyaC + HyaA + HyaB -> HyaA-HyaB-HyaC
Components:
Function
Name
Type
reactant
HyaA
protein
product
HyaA-HyaB-HyaC
complex
reactant
HyaB
protein
reactant
HyaC
protein
hyaABCDEF_mRNA
HyaB
Name:
hyaABCDEF_mRNA -> HyaB
Description:
Translation of HyaB
Type:
translation
Pathway Components:
hyaABCDEF_mRNA -> HyaB
Components:
Function
Name
Type
product
HyaB
protein
reactant
hyaABCDEF_mRNA
RNA
hyaABCDEF_mRNA
HyaC
Name:
hyaABCDEF_mRNA -> HyaC
Description:
Translation of HyaC
Type:
translation
Pathway Components:
hyaABCDEF_mRNA -> HyaC
Components:
Function
Name
Type
product
HyaC
protein
reactant
hyaABCDEF_mRNA
RNA
hyaABCDEF_mRNA
HyaD
Name:
hyaABCDEF_mRNA -> HyaD
Description:
Translation of HyaD
Type:
translation
Pathway Components:
hyaABCDEF_mRNA -> HyaD
Components:
Function
Name
Type
product
HyaD
protein
reactant
hyaABCDEF_mRNA
RNA
hyaABCDEF_mRNA
HyaE
Name:
hyaABCDEF_mRNA -> HyaE
Description:
Translation of HyaE
Type:
translation
Pathway Components:
hyaABCDEF_mRNA -> HyaE
Components:
Function
Name
Type
product
HyaE
protein
reactant
hyaABCDEF_mRNA
RNA
hyaABCDEF_mRNA
HyaF
Name:
hyaABCDEF_mRNA -> HyaF
Description:
Translation of HyaF
Type:
translation
Pathway Components:
hyaABCDEF_mRNA -> HyaF
Components:
Function
Name
Type
product
HyaF
protein
reactant
hyaABCDEF_mRNA
RNA
hcp-hcr_mRNA
Hcp
Name:
hcp-hcr_mRNA -> Hcp
Description:
Translation of Hcp
Type:
translation
Pathway Components:
hcp-hcr_mRNA -> Hcp
Components:
Function
Name
Type
product
Hcp
protein
reactant
hcp-hcr_mRNA
RNA
hcp-hcr_mRNA
Hcr
Name:
hcp-hcr_mRNA -> Hcr
Description:
Translation of Hcr
Type:
translation
Pathway Components:
hcp-hcr_mRNA -> Hcr
Components:
Function
Name
Type
product
Hcr
protein
reactant
hcp-hcr_mRNA
RNA
narGHJI_mRNA
NarG
Name:
narGHJI_mRNA -> NarG
Description:
Translation of NarG
Type:
translation
Pathway Components:
narGHJI_mRNA -> NarG
Components:
Function
Name
Type
product
NarG
protein
reactant
narGHJI_mRNA
RNA
NarG + NarI + NarH
NarG-NarH-NarI
Name:
NarG + NarI + NarH -> NarG-NarH-NarI
Description:
Reaction transforming NarG, NarI, NarH into NarG-NarH-NarI
Type:
state transition
Pathway Components:
NarG + NarI + NarH -> NarG-NarH-NarI
Components:
Function
Name
Type
reactant
NarG
protein
product
NarG-NarH-NarI
complex
reactant
NarH
protein
reactant
NarI
protein
NarG-NarH-NarI
menaquinol_Ext + nitrate_Ext
vitamin K2 + nitrite
Name:
menaquinol_Ext + nitrate_Ext -> vitamin K2 + nitrite
Description:
Transport of menaquinol_Ext, nitrate_Ext through a bacterial membrane, leading to the presence of vitamin K2, nitrite inside the cell.
Type:
transport
Pathway Components:
menaquinol_Ext + nitrate_Ext - NarG-NarH-NarI -> vitamin K2 + nitrite
Components:
Function
Name
Type
catalyzer
NarG-NarH-NarI
complex
reactant
menaquinol_Ext
simple_molecule
reactant
nitrate_Ext
simple_molecule
product
nitrite
simple_molecule
product
vitamin K2
simple_molecule
NarG-NarH-NarI
ubiquinol_Ext + nitrate_Ext
ubiquinone + nitrite
Name:
ubiquinol_Ext + nitrate_Ext -> ubiquinone + nitrite
Description:
Transport of ubiquinol_Ext, nitrate_Ext through a bacterial membrane, leading to the presence of ubiquinone, nitrite inside the cell.
Type:
transport
Pathway Components:
ubiquinol_Ext + nitrate_Ext - NarG-NarH-NarI -> ubiquinone + nitrite
Components:
Function
Name
Type
catalyzer
NarG-NarH-NarI
complex
reactant
nitrate_Ext
simple_molecule
product
nitrite
simple_molecule
reactant
ubiquinol_Ext
simple_molecule
product
ubiquinone
simple_molecule
NarG-NarH-NarI
A(H2) + TeO2
acceptors + Te0
Name:
A(H2) + TeO2 -> acceptors + Te0
Description:
Reaction transforming A(H2), TeO2 into acceptors, Te0
Type:
state transition
Pathway Components:
A(H2) + TeO2 - NarG-NarH-NarI -> acceptors + Te0
Components:
Function
Name
Type
reactant
A(H2)
simple_molecule
catalyzer
NarG-NarH-NarI
complex
product
Te0
simple_molecule
reactant
TeO2
simple_molecule
product
acceptors
simple_molecule
narGHJI_mRNA
NarH
Name:
narGHJI_mRNA -> NarH
Description:
Translation of NarH
Type:
translation
Pathway Components:
narGHJI_mRNA -> NarH
Components:
Function
Name
Type
product
NarH
protein
reactant
narGHJI_mRNA
RNA
narGHJI_mRNA
NarJ
Name:
narGHJI_mRNA -> NarJ
Description:
Translation of NarJ
Type:
translation
Pathway Components:
narGHJI_mRNA -> NarJ
Components:
Function
Name
Type
product
NarJ
protein
reactant
narGHJI_mRNA
RNA
narGHJI_mRNA
NarI
Name:
narGHJI_mRNA -> NarI
Description:
Translation of NarI
Type:
translation
Pathway Components:
narGHJI_mRNA -> NarI
Components:
Function
Name
Type
product
NarI
protein
reactant
narGHJI_mRNA
RNA
cydDC_mRNA
CydD
Name:
cydDC_mRNA -> CydD
Description:
Translation of CydD
Type:
translation
Pathway Components:
cydDC_mRNA -> CydD
Components:
Function
Name
Type
product
CydD
protein
reactant
cydDC_mRNA
RNA
CydD + CydC
CydD-CydC
Name:
CydD + CydC -> CydD-CydC
Description:
Reaction transforming CydD, CydC into CydD-CydC
Type:
state transition
Pathway Components:
CydD + CydC -> CydD-CydC
Components:
Function
Name
Type
reactant
CydC
protein
reactant
CydD
protein
product
CydD-CydC
complex
CydD-CydC
glutathione_Ext
glutathione
Name:
glutathione_Ext -> glutathione
Description:
Transport of glutathione_Ext through a bacterial membrane, leading to the presence of glutathione inside the cell.
Type:
transport
Pathway Components:
glutathione_Ext - CydD-CydC -> glutathione
Components:
Function
Name
Type
catalyzer
CydD-CydC
complex
product
glutathione
simple_molecule
reactant
glutathione_Ext
simple_molecule
CydD-CydC
cysteine_Ext
cysteine
Name:
cysteine_Ext -> cysteine
Description:
Transport of cysteine_Ext through a bacterial membrane, leading to the presence of cysteine inside the cell.
Type:
transport
Pathway Components:
cysteine_Ext - CydD-CydC -> cysteine
Components:
Function
Name
Type
catalyzer
CydD-CydC
complex
product
cysteine
simple_molecule
reactant
cysteine_Ext
simple_molecule
cydDC_mRNA
CydC
Name:
cydDC_mRNA -> CydC
Description:
Translation of CydC
Type:
translation
Pathway Components:
cydDC_mRNA -> CydC
Components:
Function
Name
Type
product
CydC
protein
reactant
cydDC_mRNA
RNA
torCAD_mRNA
TorC
Name:
torCAD_mRNA -> TorC
Description:
Translation of TorC
Type:
translation
Pathway Components:
torCAD_mRNA -> TorC
Components:
Function
Name
Type
product
TorC
protein
reactant
torCAD_mRNA
RNA
TorA + TorC
TorC-TorA
Name:
TorA + TorC -> TorC-TorA
Description:
Reaction transforming TorA, TorC into TorC-TorA
Type:
state transition
Pathway Components:
TorA + TorC -> TorC-TorA
Components:
Function
Name
Type
reactant
TorA
protein
reactant
TorC
protein
product
TorC-TorA
complex
TorC-TorA
menaquinol + TMAO
vitamin K2 + (CH3)3NH
Name:
menaquinol + TMAO -> vitamin K2 + (CH3)3NH
Description:
Reaction transforming menaquinol, TMAO into vitamin K2, (CH3)3NH
Type:
state transition
Pathway Components:
menaquinol + TMAO - TorC-TorA -> vitamin K2 + (CH3)3NH
Components:
Function
Name
Type
product
(CH3)3NH
simple_molecule
reactant
TMAO
simple_molecule
catalyzer
TorC-TorA
complex
reactant
menaquinol
simple_molecule
product
vitamin K2
simple_molecule
torCAD_mRNA
TorA
Name:
torCAD_mRNA -> TorA
Description:
Translation of TorA
Type:
translation
Pathway Components:
torCAD_mRNA -> TorA
Components:
Function
Name
Type
product
TorA
protein
reactant
torCAD_mRNA
RNA
TorA
a-reduced-TorC-protein + TMAO
an-oxidized-TorC-protein + (CH3)3NH
Name:
a-reduced-TorC-protein + TMAO -> an-oxidized-TorC-protein + (CH3)3NH
Description:
Reaction transforming a-reduced-TorC-protein, TMAO into an-oxidized-TorC-protein, (CH3)3NH
Type:
state transition
Pathway Components:
a-reduced-TorC-protein + TMAO - TorA -> an-oxidized-TorC-protein + (CH3)3NH
Components:
Function
Name
Type
product
(CH3)3NH
simple_molecule
reactant
TMAO
simple_molecule
catalyzer
TorA
protein
reactant
a-reduced-TorC-protein
simple_molecule
product
an-oxidized-TorC-protein
simple_molecule
torCAD_mRNA
TorD
Name:
torCAD_mRNA -> TorD
Description:
Translation of TorD
Type:
translation
Pathway Components:
torCAD_mRNA -> TorD
Components:
Function
Name
Type
product
TorD
protein
reactant
torCAD_mRNA
RNA
frdABCD_mRNA
FrdA
Name:
frdABCD_mRNA -> FrdA
Description:
Translation of FrdA
Type:
translation
Pathway Components:
frdABCD_mRNA -> FrdA
Components:
Function
Name
Type
product
FrdA
protein
reactant
frdABCD_mRNA
RNA
FrdC + FrdD + FrdA + FrdB
FrdA-FrdB-FrdC-FrdD
Name:
FrdC + FrdD + FrdA + FrdB -> FrdA-FrdB-FrdC-FrdD
Description:
Reaction transforming FrdC, FrdD, FrdA, FrdB into FrdA-FrdB-FrdC-FrdD
Type:
state transition
Pathway Components:
FrdC + FrdD + FrdA + FrdB -> FrdA-FrdB-FrdC-FrdD
Components:
Function
Name
Type
reactant
FrdA
protein
product
FrdA-FrdB-FrdC-FrdD
complex
reactant
FrdB
protein
reactant
FrdC
protein
reactant
FrdD
protein
FrdA-FrdB-FrdC-FrdD
oxalacetate
menaquinol + fumarate
vitamin K2 + succinate
Name:
menaquinol + fumarate -> vitamin K2 + succinate
Description:
Reaction transforming menaquinol, fumarate into vitamin K2, succinate
Type:
state transition
Pathway Components:
menaquinol + fumarate - FrdA-FrdB-FrdC-FrdD - oxalacetate -> vitamin K2 + succinate
Components:
Function
Name
Type
catalyzer
FrdA-FrdB-FrdC-FrdD
complex
reactant
fumarate
simple_molecule
reactant
menaquinol
simple_molecule
inhibitor
oxalacetate
simple_molecule
product
succinate
simple_molecule
product
vitamin K2
simple_molecule
frdABCD_mRNA
FrdB
Name:
frdABCD_mRNA -> FrdB
Description:
Translation of FrdB
Type:
translation
Pathway Components:
frdABCD_mRNA -> FrdB
Components:
Function
Name
Type
product
FrdB
protein
reactant
frdABCD_mRNA
RNA
frdABCD_mRNA
FrdC
Name:
frdABCD_mRNA -> FrdC
Description:
Translation of FrdC
Type:
translation
Pathway Components:
frdABCD_mRNA -> FrdC
Components:
Function
Name
Type
product
FrdC
protein
reactant
frdABCD_mRNA
RNA
frdABCD_mRNA
FrdD
Name:
frdABCD_mRNA -> FrdD
Description:
Translation of FrdD
Type:
translation
Pathway Components:
frdABCD_mRNA -> FrdD
Components:
Function
Name
Type
product
FrdD
protein
reactant
frdABCD_mRNA
RNA
ubiCA_mRNA
UbiC
Name:
ubiCA_mRNA -> UbiC
Description:
Translation of UbiC
Type:
translation
Pathway Components:
ubiCA_mRNA -> UbiC
Components:
Function
Name
Type
product
UbiC
protein
reactant
ubiCA_mRNA
RNA
4-hydroxybenzoate
UbiC
chorismate
4-hydroxybenzoate + pyruvate
Name:
chorismate -> 4-hydroxybenzoate + pyruvate
Description:
Reaction transforming chorismate into 4-hydroxybenzoate, pyruvate
Type:
state transition
Pathway Components:
chorismate - UbiC - 4-hydroxybenzoate -> 4-hydroxybenzoate + pyruvate
Components:
Function
Name
Type
inhibitor
4-hydroxybenzoate
simple_molecule
product
4-hydroxybenzoate
simple_molecule
catalyzer
UbiC
protein
reactant
chorismate
simple_molecule
product
pyruvate
simple_molecule
ubiCA_mRNA
UbiA
Name:
ubiCA_mRNA -> UbiA
Description:
Translation of UbiA
Type:
translation
Pathway Components:
ubiCA_mRNA -> UbiA
Components:
Function
Name
Type
product
UbiA
protein
reactant
ubiCA_mRNA
RNA
UbiA
octaprenyl diphosphate + 4-hydroxybenzoate
3-octaprenyl-4-hydroxybenzoate + diphosphate
Name:
octaprenyl diphosphate + 4-hydroxybenzoate -> 3-octaprenyl-4-hydroxybenzoate + diphosphate
Description:
Reaction transforming octaprenyl diphosphate, 4-hydroxybenzoate into 3-octaprenyl-4-hydroxybenzoate, diphosphate
Type:
state transition
Pathway Components:
octaprenyl diphosphate + 4-hydroxybenzoate - UbiA -> 3-octaprenyl-4-hydroxybenzoate + diphosphate
Components:
Function
Name
Type
product
3-octaprenyl-4-hydroxybenzoate
simple_molecule
reactant
4-hydroxybenzoate
simple_molecule
catalyzer
UbiA
protein
product
diphosphate
simple_molecule
reactant
octaprenyl diphosphate
simple_molecule
dcuB-fumB_mRNA
DcuB
Name:
dcuB-fumB_mRNA -> DcuB
Description:
Translation of DcuB
Type:
translation
Pathway Components:
dcuB-fumB_mRNA -> DcuB
Components:
Function
Name
Type
product
DcuB
protein
reactant
dcuB-fumB_mRNA
RNA
DcuB
succinate_Ext + tartrate_Ext
succinate + tartrate
Name:
succinate_Ext + tartrate_Ext -> succinate + tartrate
Description:
Transport of succinate_Ext, tartrate_Ext through a bacterial membrane, leading to the presence of succinate, tartrate inside the cell.
Type:
transport
Pathway Components:
succinate_Ext + tartrate_Ext - DcuB -> succinate + tartrate
Components:
Function
Name
Type
catalyzer
DcuB
protein
product
succinate
simple_molecule
reactant
succinate_Ext
simple_molecule
product
tartrate
simple_molecule
reactant
tartrate_Ext
simple_molecule
dcuB-fumB_mRNA
FumB
Name:
dcuB-fumB_mRNA -> FumB
Description:
Translation of FumB
Type:
translation
Pathway Components:
dcuB-fumB_mRNA -> FumB
Components:
Function
Name
Type
product
FumB
protein
reactant
dcuB-fumB_mRNA
RNA
FumB
malate
fumarate
Name:
malate -> fumarate
Description:
Reaction transforming malate into fumarate
Type:
state transition
Pathway Components:
malate - FumB -> fumarate
Components:
Function
Name
Type
catalyzer
FumB
protein
product
fumarate
simple_molecule
reactant
malate
simple_molecule
FumB
tartrate
oxalacetate
Name:
tartrate -> oxalacetate
Description:
Reaction transforming tartrate into oxalacetate
Type:
state transition
Pathway Components:
tartrate - FumB -> oxalacetate
Components:
Function
Name
Type
catalyzer
FumB
protein
product
oxalacetate
simple_molecule
reactant
tartrate
simple_molecule
norVW_mRNA
NorV
Name:
norVW_mRNA -> NorV
Description:
Translation of NorV
Type:
translation
Pathway Components:
norVW_mRNA -> NorV
Components:
Function
Name
Type
product
NorV
protein
reactant
norVW_mRNA
RNA
norVW_mRNA
FlRd
Name:
norVW_mRNA -> FlRd
Description:
Translation of FlRd
Type:
translation
Pathway Components:
norVW_mRNA -> FlRd
Components:
Function
Name
Type
product
FlRd
simple_molecule
reactant
norVW_mRNA
RNA
norVW_mRNA
NorW
Name:
norVW_mRNA -> NorW
Description:
Translation of NorW
Type:
translation
Pathway Components:
norVW_mRNA -> NorW
Components:
Function
Name
Type
product
NorW
protein
reactant
norVW_mRNA
RNA
NorW
oxidized flavorubredoxin
FlRd
Name:
oxidized flavorubredoxin -> FlRd
Description:
Reaction transforming oxidized flavorubredoxin into FlRd
Type:
state transition
Pathway Components:
oxidized flavorubredoxin - NorW -> FlRd
Components:
Function
Name
Type
product
FlRd
simple_molecule
catalyzer
NorW
protein
reactant
oxidized flavorubredoxin
simple_molecule
nrfABCDEFG_mRNA
NrfA
Name:
nrfABCDEFG_mRNA -> NrfA
Description:
Translation of NrfA
Type:
translation
Pathway Components:
nrfABCDEFG_mRNA -> NrfA
Components:
Function
Name
Type
product
NrfA
protein
reactant
nrfABCDEFG_mRNA
RNA
NrfA + NrfB
NrfA-NrfB
Name:
NrfA + NrfB -> NrfA-NrfB
Description:
Reaction transforming NrfA, NrfB into NrfA-NrfB
Type:
state transition
Pathway Components:
NrfA + NrfB -> NrfA-NrfB
Components:
Function
Name
Type
reactant
NrfA
protein
product
NrfA-NrfB
complex
reactant
NrfB
protein
NrfA
a-reduced-NrfB-protein + nitrite
an-oxidized-NrfB-protein + ammonium
Name:
a-reduced-NrfB-protein + nitrite -> an-oxidized-NrfB-protein + ammonium
Description:
Reaction transforming a-reduced-NrfB-protein, nitrite into an-oxidized-NrfB-protein, ammonium
Type:
state transition
Pathway Components:
a-reduced-NrfB-protein + nitrite - NrfA -> an-oxidized-NrfB-protein + ammonium
Components:
Function
Name
Type
catalyzer
NrfA
protein
reactant
a-reduced-NrfB-protein
simple_molecule
product
ammonium
simple_molecule
product
an-oxidized-NrfB-protein
simple_molecule
reactant
nitrite
simple_molecule
nrfABCDEFG_mRNA
NrfB
Name:
nrfABCDEFG_mRNA -> NrfB
Description:
Translation of NrfB
Type:
translation
Pathway Components:
nrfABCDEFG_mRNA -> NrfB
Components:
Function
Name
Type
product
NrfB
protein
reactant
nrfABCDEFG_mRNA
RNA
nrfABCDEFG_mRNA
NrfC
Name:
nrfABCDEFG_mRNA -> NrfC
Description:
Translation of NrfC
Type:
translation
Pathway Components:
nrfABCDEFG_mRNA -> NrfC
Components:
Function
Name
Type
product
NrfC
protein
reactant
nrfABCDEFG_mRNA
RNA
NrfD + NrfC
NrfD-NrfC
Name:
NrfD + NrfC -> NrfD-NrfC
Description:
Reaction transforming NrfD, NrfC into NrfD-NrfC
Type:
state transition
Pathway Components:
NrfD + NrfC -> NrfD-NrfC
Components:
Function
Name
Type
reactant
NrfC
protein
reactant
NrfD
protein
product
NrfD-NrfC
complex
NrfD-NrfC
an-oxidized-NrfB-protein + menaquinol
a-reduced-NrfB-protein + vitamin K2
Name:
an-oxidized-NrfB-protein + menaquinol -> a-reduced-NrfB-protein + vitamin K2
Description:
Reaction transforming an-oxidized-NrfB-protein, menaquinol into a-reduced-NrfB-protein, vitamin K2
Type:
state transition
Pathway Components:
an-oxidized-NrfB-protein + menaquinol - NrfD-NrfC -> a-reduced-NrfB-protein + vitamin K2
Components:
Function
Name
Type
catalyzer
NrfD-NrfC
complex
product
a-reduced-NrfB-protein
simple_molecule
reactant
an-oxidized-NrfB-protein
simple_molecule
reactant
menaquinol
simple_molecule
product
vitamin K2
simple_molecule
nrfABCDEFG_mRNA
NrfD
Name:
nrfABCDEFG_mRNA -> NrfD
Description:
Translation of NrfD
Type:
translation
Pathway Components:
nrfABCDEFG_mRNA -> NrfD
Components:
Function
Name
Type
product
NrfD
protein
reactant
nrfABCDEFG_mRNA
RNA
nrfABCDEFG_mRNA
NrfE
Name:
nrfABCDEFG_mRNA -> NrfE
Description:
Translation of NrfE
Type:
translation
Pathway Components:
nrfABCDEFG_mRNA -> NrfE
Components:
Function
Name
Type
product
NrfE
protein
reactant
nrfABCDEFG_mRNA
RNA
nrfABCDEFG_mRNA
NrfF
Name:
nrfABCDEFG_mRNA -> NrfF
Description:
Translation of NrfF
Type:
translation
Pathway Components:
nrfABCDEFG_mRNA -> NrfF
Components:
Function
Name
Type
product
NrfF
protein
reactant
nrfABCDEFG_mRNA
RNA
nrfABCDEFG_mRNA
NrfG
Name:
nrfABCDEFG_mRNA -> NrfG
Description:
Translation of NrfG
Type:
translation
Pathway Components:
nrfABCDEFG_mRNA -> NrfG
Components:
Function
Name
Type
product
NrfG
protein
reactant
nrfABCDEFG_mRNA
RNA
Reactants
H2Dtpp-mADP
Name:
carboxy-adenylated small subunit of molybdopterin synthase -> H2Dtpp-mADP
Description:
Transformation of carboxy-adenylated small subunit of molybdopterin synthase into H2Dtpp-mADP by one or more reactions not shown.
Type:
complementary pathway reaction
Pathway Components:
carboxy-adenylated small subunit of molybdopterin synthase /
RXN-12473 /
RXN-8342 /
RXN-8344 /
H2Dtpp-mADP
Components:
Function
Name
Type
product
H2Dtpp-mADP
simple_molecule
reactant
carboxy-adenylated small subunit of molybdopterin synthase
simple_molecule