RegulonDB

Name:

dctA -> dctA_mRNA

Description:

Transcription of transcription unit dctA. Reaction activation by DcuR-phosphate.

Type:

transcription

Pathway Components:

dctA - DcuR-phosphate -> dctA_mRNA

Components:

Function	Name	Type
activator	DcuR-phosphate	complex
reactant	dctA	gene
product	dctA_mRNA	RNA

Name:

dcuB-fumB -> dcuB-fumB_mRNA

Description:

Transcription of transcription unit dcuB-fumB. Reaction activation by DcuR-phosphate.

Type:

transcription

Pathway Components:

dcuB-fumB - DcuR-phosphate -> dcuB-fumB_mRNA

Components:

Function	Name	Type
activator	DcuR-phosphate	complex
reactant	dcuB-fumB	gene
product	dcuB-fumB_mRNA	RNA

Name:

dpiBA -> dpiBA_mRNA

Description:

Transcription of transcription unit dpiBA. Reaction activation by DcuR-phosphate.

Type:

transcription

Pathway Components:

dpiBA - DcuR-phosphate -> dpiBA_mRNA

Components:

Function	Name	Type
activator	DcuR-phosphate	complex
reactant	dpiBA	gene
product	dpiBA_mRNA	RNA

Name:

frdABCD -> frdABCD_mRNA

Description:

Transcription of transcription unit frdABCD. Reaction activation by DcuR-phosphate.

Type:

transcription

Pathway Components:

frdABCD - DcuR-phosphate -> frdABCD_mRNA

Components:

Function	Name	Type
activator	DcuR-phosphate	complex
reactant	frdABCD	gene
product	frdABCD_mRNA	RNA

Name:

dpiBA_mRNA -> DpiB

Description:

Translation of DpiB

Type:

translation

Pathway Components:

dpiBA_mRNA -> DpiB

Components:

Function	Name	Type
product	DpiB	protein
reactant	dpiBA_mRNA	RNA

Name:

dpiBA_mRNA -> DpiA

Description:

Translation of DpiA

Type:

translation

Pathway Components:

dpiBA_mRNA -> DpiA

Components:

Function	Name	Type
product	DpiA	protein
reactant	dpiBA_mRNA	RNA

Name:

dctA_mRNA -> DctA

Description:

Translation of DctA

Type:

translation

Pathway Components:

dctA_mRNA -> DctA

Components:

Function	Name	Type
product	DctA	protein
reactant	dctA_mRNA	RNA

Name:

C4-dicarboxylate_Ext -> C4-dicarboxylate

Description:

Transport of C4-dicarboxylate_Ext through a bacterial membrane, leading to the presence of C4-dicarboxylate inside the cell.

Type:

transport

Pathway Components:

C4-dicarboxylate_Ext - DctA -> C4-dicarboxylate

Components:

Function	Name	Type
product	C4-dicarboxylate	simple_molecule
reactant	C4-dicarboxylate_Ext	simple_molecule
catalyzer	DctA	protein

Name:

aspartate_Ext -> aspartate

Description:

Transport of aspartate_Ext through a bacterial membrane, leading to the presence of aspartate inside the cell.

Type:

transport

Pathway Components:

aspartate_Ext - DctA -> aspartate

Components:

Function	Name	Type
catalyzer	DctA	protein
product	aspartate	simple_molecule
reactant	aspartate_Ext	simple_molecule

Name:

succinate_Ext -> succinate

Description:

Transport of succinate_Ext through a bacterial membrane, leading to the presence of succinate inside the cell.

Type:

transport

Pathway Components:

succinate_Ext - DctA -> succinate

Components:

Function	Name	Type
catalyzer	DctA	protein
product	succinate	simple_molecule
reactant	succinate_Ext	simple_molecule

Name:

fumarate_Ext -> fumarate

Description:

Transport of fumarate_Ext through a bacterial membrane, leading to the presence of fumarate inside the cell.

Type:

transport

Pathway Components:

fumarate_Ext - DctA - DcuB -> fumarate

Components:

Function	Name	Type
catalyzer	DctA	protein
catalyzer	DcuB	protein
product	fumarate	simple_molecule
reactant	fumarate_Ext	simple_molecule

Name:

malate_Ext -> malate

Description:

Transport of malate_Ext through a bacterial membrane, leading to the presence of malate inside the cell.

Type:

transport

Pathway Components:

malate_Ext - DctA -> malate

Components:

Function	Name	Type
catalyzer	DctA	protein
product	malate	simple_molecule
reactant	malate_Ext	simple_molecule

Name:

orotate_Ext -> orotate

Description:

Transport of orotate_Ext through a bacterial membrane, leading to the presence of orotate inside the cell.

Type:

transport

Pathway Components:

orotate_Ext - DctA -> orotate

Components:

Function	Name	Type
catalyzer	DctA	protein
product	orotate	simple_molecule
reactant	orotate_Ext	simple_molecule

Name:

dcuB-fumB_mRNA -> DcuB

Description:

Translation of DcuB

Type:

translation

Pathway Components:

dcuB-fumB_mRNA -> DcuB

Components:

Function	Name	Type
product	DcuB	protein
reactant	dcuB-fumB_mRNA	RNA

Name:

succinate_Ext + fumarate_Ext -> succinate + fumarate

Description:

Transport of succinate_Ext, fumarate_Ext through a bacterial membrane, leading to the presence of succinate, fumarate inside the cell.

Type:

transport

Pathway Components:

succinate_Ext + fumarate_Ext - DcuB -> succinate + fumarate

Components:

Function	Name	Type
catalyzer	DcuB	protein
product	fumarate	simple_molecule
reactant	fumarate_Ext	simple_molecule
product	succinate	simple_molecule
reactant	succinate_Ext	simple_molecule

Name:

succinate_Ext + malate_Ext -> succinate + malate

Description:

Transport of succinate_Ext, malate_Ext through a bacterial membrane, leading to the presence of succinate, malate inside the cell.

Type:

transport

Pathway Components:

succinate_Ext + malate_Ext - DcuB -> succinate + malate

Components:

Function	Name	Type
catalyzer	DcuB	protein
product	malate	simple_molecule
reactant	malate_Ext	simple_molecule
product	succinate	simple_molecule
reactant	succinate_Ext	simple_molecule

Name:

aspartate_Ext + succinate_Ext -> succinate + aspartate

Description:

Transport of aspartate_Ext, succinate_Ext through a bacterial membrane, leading to the presence of succinate, aspartate inside the cell.

Type:

transport

Pathway Components:

aspartate_Ext + succinate_Ext - DcuB -> succinate + aspartate

Components:

Function	Name	Type
catalyzer	DcuB	protein
product	aspartate	simple_molecule
reactant	aspartate_Ext	simple_molecule
product	succinate	simple_molecule
reactant	succinate_Ext	simple_molecule

Name:

succinate_Ext + tartrate_Ext -> succinate + tartrate

Description:

Transport of succinate_Ext, tartrate_Ext through a bacterial membrane, leading to the presence of succinate, tartrate inside the cell.

Type:

transport

Pathway Components:

succinate_Ext + tartrate_Ext - DcuB -> succinate + tartrate

Components:

Function	Name	Type
catalyzer	DcuB	protein
product	succinate	simple_molecule
reactant	succinate_Ext	simple_molecule
product	tartrate	simple_molecule
reactant	tartrate_Ext	simple_molecule

Name:

dcuB-fumB_mRNA -> FumB

Description:

Translation of FumB

Type:

translation

Pathway Components:

dcuB-fumB_mRNA -> FumB

Components:

Function	Name	Type
product	FumB	protein
reactant	dcuB-fumB_mRNA	RNA

Name:

malate -> fumarate

Description:

Reaction transforming malate into fumarate

Type:

state transition

Pathway Components:

malate - FumB -> fumarate

Components:

Function	Name	Type
catalyzer	FumB	protein
product	fumarate	simple_molecule
reactant	malate	simple_molecule

Name:

tartrate -> oxalacetate

Description:

Reaction transforming tartrate into oxalacetate

Type:

state transition

Pathway Components:

tartrate - FumB -> oxalacetate

Components:

Function	Name	Type
catalyzer	FumB	protein
product	oxalacetate	simple_molecule
reactant	tartrate	simple_molecule

Name:

frdABCD_mRNA -> FrdA

Description:

Translation of FrdA

Type:

translation

Pathway Components:

frdABCD_mRNA -> FrdA

Components:

Function	Name	Type
product	FrdA	protein
reactant	frdABCD_mRNA	RNA

Name:

FrdA + FrdB + FrdD + FrdC -> FrdA-FrdB-FrdC-FrdD

Description:

Reaction transforming FrdA, FrdB, FrdD, FrdC into FrdA-FrdB-FrdC-FrdD

Type:

state transition

Pathway Components:

FrdA + FrdB + FrdD + FrdC -> FrdA-FrdB-FrdC-FrdD

Components:

Function	Name	Type
reactant	FrdA	protein
product	FrdA-FrdB-FrdC-FrdD	complex
reactant	FrdB	protein
reactant	FrdC	protein
reactant	FrdD	protein

Name:

menaquinol + fumarate -> vitamin K2 + succinate

Description:

Reaction transforming menaquinol, fumarate into vitamin K2, succinate

Type:

state transition

Pathway Components:

menaquinol + fumarate - FrdA-FrdB-FrdC-FrdD - oxalacetate -> vitamin K2 + succinate

Components:

Function	Name	Type
catalyzer	FrdA-FrdB-FrdC-FrdD	complex
reactant	fumarate	simple_molecule
reactant	menaquinol	simple_molecule
inhibitor	oxalacetate	simple_molecule
product	succinate	simple_molecule
product	vitamin K2	simple_molecule

Name:

frdABCD_mRNA -> FrdB

Description:

Translation of FrdB

Type:

translation

Pathway Components:

frdABCD_mRNA -> FrdB

Components:

Function	Name	Type
product	FrdB	protein
reactant	frdABCD_mRNA	RNA

Name:

frdABCD_mRNA -> FrdC

Description:

Translation of FrdC

Type:

translation

Pathway Components:

frdABCD_mRNA -> FrdC

Components:

Function	Name	Type
product	FrdC	protein
reactant	frdABCD_mRNA	RNA

Name:

frdABCD_mRNA -> FrdD

Description:

Translation of FrdD

Type:

translation

Pathway Components:

frdABCD_mRNA -> FrdD

Components:

Function	Name	Type
product	FrdD	protein
reactant	frdABCD_mRNA	RNA

Gensor Unit Map